Non-Coding RNA Search

Ss1.1-Pig4-TMW8029I10.3

Sequence:


               
               CCCTTAGAAATTATAAACTTAAATTTCACAAGTTGATCTCAATGATGTACTGTTTATAAC
ATATATTCTTCCATTTTAGGTACAGACAGAAGCTGCTCAGTTGCTCACAGGTTTCAGTAA
TAAGAACTGAGGAATTTTTCCATGAAATATTTAAGAAACATCACCTTTTCATCAAATTAT
AAAGATAATAAATATATTAGCCCTAACTGTTCTATGGATGTTTTATCAGTTTTTAATGTT
GTGACCATTTAACAAAATATACAAAATTCTAGATTTCTTCACAAGTAACAAGGCAAAAGA
AATAACTGCTATAAGAGTGGTAGATATCTCCATGGCTTAGAGGCAGAGATAGTGTGTCTG
AGACACCAGGAATACAAAGTGCTATGAGATTTCTAAGCAGGATTGGGTTATATCATGATG
GGAGGAGATCAAGAAAAGAAAGCTTTGTGGAAGAGGTGGCATGGGGGAGTGCATTTTCAA
GTTGGACTGATTCAGAGTTGAGATCTTGCAGAGAAGGTGCAGTGAAAGTTAGGTTAGCAT
GATGAGGGTTCTTGGTGTAAAGCAGTTAAATGATGTATCTTGGAGCCAACCTGTGTAAGG
AAAGAACTCAAGTCAGGAGAGGACTGAAAATGGAGTGTTGCTTTTTTTTCTCTTTTTGTT
AAATGTGAGGTAGTCTTACAAGTGGATAGATTTGTCACAGGCAGAGCCCAAATTCTATTC
CCTAATGTGGTGAAAGGAACATGGAACTCAAGGGTGAAATGGAAATTAAGATGTTTTAAA
TATATAGGACAATGCTATTTATTAGGGGTGCCACCAGTACAAAATCTTAAGTTTTATAAA
AAGTAGTAGCTTGAATGCCACTTAGAAATCTGAGAGTGTACATGTAGGTGGATTTTTCTC
AAAGGAAAAACATTTTAATATTGTGAGGTATGTGCTGTTTCTGTTGATGTATGTTTTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCTTAGAAATTATAAACTTAAATTTCACAAGTTGATCTCAATGATGTACTGTTTATAAC
ATATATTCTTCCATTTTAGGTACAGACAGAAGCTGCTCAGTTGCTCACAGGTTTCAGTAA
TAAGAACTGAGGAATTTTTCCATGAAATATTTAAGAAACATCACCTTTTCATCAAATTAT
AAAGATAATAAATATATTAGCCCTAACTGTTCTATGGATGTTTTATCAGTTTTTAATGTT
GTGACCATTTAACAAAATATACAAAATTCTAGATTTCTTCACAAGTAACAAGGCAAAAGA
AATAACTGCTATAAGAGTGGTAGATATCTCCATGGCTTAGAGGCAGAGATAGTGTGTCTG
AGACACCAGGAATACAAAGTGCTATGAGATTTCTAAGCAGGATTGGGTTATATCATGATG
GGAGGAGATCAAGAAAAGAAAGCTTTGTGGAAGAGGTGGCATGGGGGAGTGCATTTTCAA
GTTGGACTGATTCAGAGTTGAGATCTTGCAGAGAAGGTGCAGTGAAAGTTAGGTTAGCAT
GATGAGGGTTCTTGGTGTAAAGCAGTTAAATGATGTATCTTGGAGCCAACCTGTGTAAGG
AAAGAACTCAAGTCAGGAGAGGACTGAAAATGGAGTGTTGCTTTTTTTTCTCTTTTTGTT
AAATGTGAGGTAGTCTTACAAGTGGATAGATTTGTCACAGGCAGAGCCCAAATTCTATTC
CCTAATGTGGTGAAAGGAACATGGAACTCAAGGGTGAAATGGAAATTAAGATGTTTTAAA
TATATAGGACAATGCTATTTATTAGGGGTGCCACCAGTACAAAATCTTAAGTTTTATAAA
AAGTAGTAGCTTGAATGCCACTTAGAAATCTGAGAGTGTACATGTAGGTGGATTTTTCTC
AAAGGAAAAACATTTTAATATTGTGAGGTATGTGCTGTTTCTGTTGATGTATGTTTTCAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               11-539, gnl|bosTau2|chr14 (48176251-48176771)
               

               
               11-539, gnl|Hg17|chr8 (87555776-87555203)
               

               
               11-539, gnl|Mm7|chr4 (19533168-19533700)
               


               
               704-960, gnl|bosTau2|chr14 (48177404-48177646)
               

               
               704-960, gnl|Hg17|chr8 (87554778-87554506)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-539, gnl|bosTau2|chr14 (48176251-48176771)
               

               
               11-539, gnl|Hg17|chr8 (87555776-87555203)
               

               
               11-539, gnl|Mm7|chr4 (19533168-19533700)
               


               
               704-960, gnl|bosTau2|chr14 (48177404-48177646)
               

               
               704-960, gnl|Hg17|chr8 (87554778-87554506)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               kid (0.129735)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               tbr (0.154178)
               

               
               lun (0.150489)
               

               
               kid (0.129735)

	11-539, gnl\|bosTau2\|chr14 (48176251-48176771)
	11-539, gnl\|Hg17\|chr8 (87555776-87555203)
	11-539, gnl\|Mm7\|chr4 (19533168-19533700)

	704-960, gnl\|bosTau2\|chr14 (48177404-48177646)
	704-960, gnl\|Hg17\|chr8 (87554778-87554506)