Non-Coding RNA Search

Ss1.1-Pig4-TMW8029I11.3.5

Sequence:


               
               ATTGATAGTATTCAGAGTCCCTCTCTGTACCCCCTGACTCCTACCACATTTTCTCTTTTT
TATTCTTCTAACTAACGTTGTCAGCTTTGTTACCCAGAACATACATACAACCTACCAGAT
GGTGCTATTCTAGTAGTTTTTCTTCACATACTTTAACATTCTTACTGCTTATACTATATA
CTTAGATATTTAATTTTGTTGGGAGCAAGAAAGTTTTCCAAGAGAAGATCATTTTGTATT
AGTATAGGAATATTATATTACACATGTGTTTTAGTTTAGCTGGCCAAATTATGCTTGGTT
GTTTGTAATTTTAAACATTGCAAATTGGCCGTCTAGCTACTGAGGCATAAAGTTAATTGA
TAATGTTGAAAATAACTTTCTTAAATTTATAACTTTGATGGCTTCAGCCTATGAGAGCAT
TTTAACATATTGCAATGCATGCTGCTTAAGGTTTAGGTCCAATTCAAATTTAAAAGCTTG
CTGGGTCATTTTTACATAGTAGAAATAGACTCTCTAGTTATGTGTTGCCCAATTACTGTT
ATTTATTATGAATTTGGGGCCCTTTTGGACAAGAAATTATTTAAACTTATGAACTAGGAG
AATTGGTGATGAGATTGCACAGGGAGGACAGTAGGGATTGCAGAATAAAAATCAGGTTTT
GAGTTTAGAGAAGAGGTCATGTCTATTTTATTAATGTGGTAAATGTAGAGAGTAGACTTA
ATTGGATAAAGGGTCTTTCAGCCAGTTTTTAGTGTAGTTTAATTGACAATTGCTTTGGAA
ATTATGGACTTTAATAAGTCTATAATTAGACTTGCTTATAGCTTGCTTAAAAACAAAATC
CAAAAAGAAAAGCACTTATCTTCTCAGAGCATCTAAAATATTTTATAGGAATAATTTCTG
TAAAAATTGAATTTTGGAATAGAATATTTTGCATTTTTTTATTGTGGTAAAAACACATAA
CATGAAATTTACCATCTTAACCAGTTTTAAGTGTACAGTTGATGATGTAAGTCTATTCAC
ATTGTTGTGAAACATCTCTAGAACTTTCTCATCCTTGAAAACTTGAAACTCTATACCTGT
TAAGCAACAATCCCCCTCTTTCTCTTCTGCCGGGAGGAATAGAATTTTGATTAAATGTAA
AACAAGAAACACCTGAATATCTCCAGTGTTTGTGTTGCAAGATCTGAAGTTATGGTAAAC
ATCAAGTTCCTAAAATTTGAAGGAGATAGAATTTCTTCCCTCCCTCCCAGTTATCTTCAG
TCATAATTGAGTGGATTTCAAATATCTATTGATTAGAAGAGCTTGTTATTTCATTTTGAG
CCAGAGGGAAGAAACATGTTTTTAACATTAGAATTAGGTTAACTCTGAATTTGTACTAAA
TTGGAAAAGTAGCAGATCTTCACAAATTATGTGTGCCTTGTTGAAAATGTTACTTGTCTT
TAAGTCTGCTTGTAACTGTTTCAAATATTTTTTTTCTCTCAAAAAGTGACCTATTTTATT
TGCTTGAATATTATGATAGGAATGCTTACTGATAATTACTTGATAATCGTATATAGCCTT
GGAACTTTAACATTTATATAAAGCTATACAGTATTAATAATTATAGCTGTACTTCTTTAA
AACATTAAATTTGAGGAAAAACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTGATAGTATTCAGAGTCCCTCTCTGTACCCCCTGACTCCTACCACATTTTCTCTTTTT
TATTCTTCTAACTAACGTTGTCAGCTTTGTTACCCAGAACATACATACAACCTACCAGAT
GGTGCTATTCTAGTAGTTTTTCTTCACATACTTTAACATTCTTACTGCTTATACTATATA
CTTAGATATTTAATTTTGTTGGGAGCAAGAAAGTTTTCCAAGAGAAGATCATTTTGTATT
AGTATAGGAATATTATATTACACATGTGTTTTAGTTTAGCTGGCCAAATTATGCTTGGTT
GTTTGTAATTTTAAACATTGCAAATTGGCCGTCTAGCTACTGAGGCATAAAGTTAATTGA
TAATGTTGAAAATAACTTTCTTAAATTTATAACTTTGATGGCTTCAGCCTATGAGAGCAT
TTTAACATATTGCAATGCATGCTGCTTAAGGTTTAGGTCCAATTCAAATTTAAAAGCTTG
CTGGGTCATTTTTACATAGTAGAAATAGACTCTCTAGTTATGTGTTGCCCAATTACTGTT
ATTTATTATGAATTTGGGGCCCTTTTGGACAAGAAATTATTTAAACTTATGAACTAGGAG
AATTGGTGATGAGATTGCACAGGGAGGACAGTAGGGATTGCAGAATAAAAATCAGGTTTT
GAGTTTAGAGAAGAGGTCATGTCTATTTTATTAATGTGGTAAATGTAGAGAGTAGACTTA
ATTGGATAAAGGGTCTTTCAGCCAGTTTTTAGTGTAGTTTAATTGACAATTGCTTTGGAA
ATTATGGACTTTAATAAGTCTATAATTAGACTTGCTTATAGCTTGCTTAAAAACAAAATC
CAAAAAGAAAAGCACTTATCTTCTCAGAGCATCTAAAATATTTTATAGGAATAATTTCTG
TAAAAATTGAATTTTGGAATAGAATATTTTGCATTTTTTTATTGTGGTAAAAACACATAA
CATGAAATTTACCATCTTAACCAGTTTTAAGTGTACAGTTGATGATGTAAGTCTATTCAC
ATTGTTGTGAAACATCTCTAGAACTTTCTCATCCTTGAAAACTTGAAACTCTATACCTGT
TAAGCAACAATCCCCCTCTTTCTCTTCTGCCGGGAGGAATAGAATTTTGATTAAATGTAA
AACAAGAAACACCTGAATATCTCCAGTGTTTGTGTTGCAAGATCTGAAGTTATGGTAAAC
ATCAAGTTCCTAAAATTTGAAGGAGATAGAATTTCTTCCCTCCCTCCCAGTTATCTTCAG
TCATAATTGAGTGGATTTCAAATATCTATTGATTAGAAGAGCTTGTTATTTCATTTTGAG
CCAGAGGGAAGAAACATGTTTTTAACATTAGAATTAGGTTAACTCTGAATTTGTACTAAA
TTGGAAAAGTAGCAGATCTTCACAAATTATGTGTGCCTTGTTGAAAATGTTACTTGTCTT
TAAGTCTGCTTGTAACTGTTTCAAATATTTTTTTTCTCTCAAAAAGTGACCTATTTTATT
TGCTTGAATATTATGATAGGAATGCTTACTGATAATTACTTGATAATCGTATATAGCCTT
GGAACTTTAACATTTATATAAAGCTATACAGTATTAATAATTATAGCTGTACTTCTTTAA
AACATTAAATTTGAGGAAAAACTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1229-1346, + strand, RNAz p=0.832784

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1229-1346, + strand, RNAz p=0.832784

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_020774, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_020774, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               18-714, gnl|bosTau2|chr24 (24740127-24739426)
               

               
               18-714, gnl|Hg17|chr18 (17701276-17702153)
               

               
               18-714, gnl|Mm7|chr18 (11021400-11022102)
               


               
               1044-1644, gnl|bosTau2|chr24 (24739418-24738830)
               

               
               1044-1644, gnl|Hg17|chr18 (17702186-17702773)
               

               
               1044-1644, gnl|Mm7|chr18 (11022110-11022943)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               18-714, gnl|bosTau2|chr24 (24740127-24739426)
               

               
               18-714, gnl|Hg17|chr18 (17701276-17702153)
               

               
               18-714, gnl|Mm7|chr18 (11021400-11022102)
               


               
               1044-1644, gnl|bosTau2|chr24 (24739418-24738830)
               

               
               1044-1644, gnl|Hg17|chr18 (17702186-17702773)
               

               
               1044-1644, gnl|Mm7|chr18 (11022110-11022943)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cbl (0.45919)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbl (0.45919)
               

               
               tes (0.207814)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               mga (0.160205)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pla (0.133672)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	18-714, gnl\|bosTau2\|chr24 (24740127-24739426)
	18-714, gnl\|Hg17\|chr18 (17701276-17702153)
	18-714, gnl\|Mm7\|chr18 (11021400-11022102)

	1044-1644, gnl\|bosTau2\|chr24 (24739418-24738830)
	1044-1644, gnl\|Hg17\|chr18 (17702186-17702773)
	1044-1644, gnl\|Mm7\|chr18 (11022110-11022943)

	cbl (0.45919)
	tes (0.207814)
	sag (0.182715)
	fty (0.17584)
	fbs (0.175346)
	duo (0.172801)
	mga (0.160205)
	liv (0.146284)
	lin (0.145603)
	pla (0.133672)
	ebs (0.118301)
	jca (0.11396)
	eje (0.0988338)
	ldo (0.0970026)