Ss1.1-Pig4-TMW8029I14.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATAAAAGTGACCAGTCAGATGATGAAAAGATACAGAATTCTGATGATGAGGAGAGGGC CCAAGGATCTGATGAAGATAAACTGCAGAATTCCGATGATGATGAGAAAATGCAGAACAC AGATGATGAAGAGAGGCCTCAGCTTTCAGATGATGAGAGACAACAGCTGTCTGAGGAAGA GAAGGCTAATTCCGATGATGAACAGCCAGCAGCTTCTGATAATGATGATGAGAAACAGAA TTCTGATGATGAAGAGCGGCCACAGATGTCTGATGAGGAGAAAATGCAAAATTCTGATGA TGAAAGGCCACAGGGCTCGGATGAAGAACACAGGCATTCAGAGGATGAAGAGGAACAAGA CCATAAATCAGAATCTGCAAGAGGCAGTGATAGTGAAGATGAAGTTTTACGAATGAAACG CAAGAATGCAATTGCATCTGATTCAGAAGCGGATAGTGACACTGAGGTACCGAAAGATAA TAATGGAACTATGGATCTGTTTGGAGGTGCAGATGATATATCTTCAGGGAGTGATGGAGA AGATAAACCACCTACTCCAGGACAACCTGTTGATGAAAATGGATTGCCTCAGGATCAACA GGAGGAGGAGCCAATTCCCGAGACCAGAATAGAAGTAGAAATACCCAAAGTAAATACTGA TTTAGGAAATGACTTGTACTTTGTTAAGCTGCCCAACTTTCTCAGTGTAGAGCCCAGACC TTTTGATCCTCAATATTATGAAGATGAATTTGAAGATGAGGAAATGCTGGATGAAGAAGG TCGAACCAGGTTAAAATTAAAGGTGGAAAATACTATAAGATGGAGGATACGCCGAGATGA AGAAGGAAATGAAATTAAAGAAAGCAATGCTCGAATAGTCAAGTGGTCAGATGGAAGCAT GTCCCTGCATTTAGGCAATGAGGTGTTTGATGTTTACAAGGCTCCACTGCAGGGTGATCA CAACCACCTTTTTATAAGACAAGGTACTGGTCTACAGGGACAAGCCGTCTTTAAAACCAA ACTCACATTCAGACCTCACTCTACAGACAGTGCCACACATAGAAAGATGACCCTGTCACT TGCAGATAGATGTTCAAAGACACAGAAGATTAGAATCTTACCAATGGCTGGTCGTGATCC TGAATGTCAACGCACAGAAATGATTAAGAAAGAAGAAGAACGTTTGCGGGCTTCTATTCG TAGGGAGTCTCAGCAGCGCCGAATGAGAGAGAAACAGCACCAGCGGGGGCTGAGCGCTAG TTACCTAGAACCTGATCGATATGATGAGGAGGAGGAAGGCGAGGAGTCCATCAGCTTGGC TGCCATTAAAAACCGATACAAAGGGGGCATTCGAGAGGAACGGGCCAGAATCTATTCATC AGACAGTGATGAGGGATCAGAAGAAGATAAGGCTCAAAGATTACTCAAAGCAAAGAAACT CACCAGTGATGAGGAAGGTGAACCTTCTGGAAAAAGAAAAGCAGAAGACGATGATAAAGC AAATAAAAAGCACAAGAAATATGTGATCAGTGATGAAGAAGAAGAAGATGATGATTGAAA TATAAAATATGAAAACTATATATTGTACAGTTTGTTTTGTAAATGTAAACATGAGTTATT TTGATTGAAATTAATTGGTCTGCTTTTGTGTAATTTTAATTGTAATAAAAAACTTTAAAA AGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATAAAAGTGACCAGTCAGATGATGAAAAGATACAGAATTCTGATGATGAGGAGAGGGC CCAAGGATCTGATGAAGATAAACTGCAGAATTCCGATGATGATGAGAAAATGCAGAACAC AGATGATGAAGAGAGGCCTCAGCTTTCAGATGATGAGAGACAACAGCTGTCTGAGGAAGA GAAGGCTAATTCCGATGATGAACAGCCAGCAGCTTCTGATAATGATGATGAGAAACAGAA TTCTGATGATGAAGAGCGGCCACAGATGTCTGATGAGGAGAAAATGCAAAATTCTGATGA TGAAAGGCCACAGGGCTCGGATGAAGAACACAGGCATTCAGAGGATGAAGAGGAACAAGA CCATAAATCAGAATCTGCAAGAGGCAGTGATAGTGAAGATGAAGTTTTACGAATGAAACG CAAGAATGCAATTGCATCTGATTCAGAAGCGGATAGTGACACTGAGGTACCGAAAGATAA TAATGGAACTATGGATCTGTTTGGAGGTGCAGATGATATATCTTCAGGGAGTGATGGAGA AGATAAACCACCTACTCCAGGACAACCTGTTGATGAAAATGGATTGCCTCAGGATCAACA GGAGGAGGAGCCAATTCCCGAGACCAGAATAGAAGTAGAAATACCCAAAGTAAATACTGA TTTAGGAAATGACTTGTACTTTGTTAAGCTGCCCAACTTTCTCAGTGTAGAGCCCAGACC TTTTGATCCTCAATATTATGAAGATGAATTTGAAGATGAGGAAATGCTGGATGAAGAAGG TCGAACCAGGTTAAAATTAAAGGTGGAAAATACTATAAGATGGAGGATACGCCGAGATGA AGAAGGAAATGAAATTAAAGAAAGCAATGCTCGAATAGTCAAGTGGTCAGATGGAAGCAT GTCCCTGCATTTAGGCAATGAGGTGTTTGATGTTTACAAGGCTCCACTGCAGGGTGATCA CAACCACCTTTTTATAAGACAAGGTACTGGTCTACAGGGACAAGCCGTCTTTAAAACCAA ACTCACATTCAGACCTCACTCTACAGACAGTGCCACACATAGAAAGATGACCCTGTCACT TGCAGATAGATGTTCAAAGACACAGAAGATTAGAATCTTACCAATGGCTGGTCGTGATCC TGAATGTCAACGCACAGAAATGATTAAGAAAGAAGAAGAACGTTTGCGGGCTTCTATTCG TAGGGAGTCTCAGCAGCGCCGAATGAGAGAGAAACAGCACCAGCGGGGGCTGAGCGCTAG TTACCTAGAACCTGATCGATATGATGAGGAGGAGGAAGGCGAGGAGTCCATCAGCTTGGC TGCCATTAAAAACCGATACAAAGGGGGCATTCGAGAGGAACGGGCCAGAATCTATTCATC AGACAGTGATGAGGGATCAGAAGAAGATAAGGCTCAAAGATTACTCAAAGCAAAGAAACT CACCAGTGATGAGGAAGGTGAACCTTCTGGAAAAAGAAAAGCAGAAGACGATGATAAAGC AAATAAAAAGCACAAGAAATATGTGATCAGTGATGAAGAAGAAGAAGATGATGATTGAAA TATAAAATATGAAAACTATATATTGTACAGTTTGTTTTGTAAATGTAAACATGAGTTATT TTGATTGAAATTAATTGGTCTGCTTTTGTGTAATTTTAATTGTAATAAAAAACTTTAAAA AGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 572-690, - strand, RNAz p=0.922237 | |
| 896-1014, - strand, RNAz p=0.971887 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 572-690, - strand, RNAz p=0.922237 | |
| 896-1014, - strand, RNAz p=0.971887 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-371, gnl|bosTau2|chr9 (15980644-15980274) | |
| 1-371, gnl|Hg17|chr15 (50045608-50045238) | |
| 1-371, gnl|Mm7|chr9 (75482761-75483134) | |
| 572-717, gnl|bosTau2|chr9 (15974329-15974184) | |
| 572-717, gnl|Hg17|chr15 (50039533-50039388) | |
| 572-717, gnl|Mm7|chr9 (75486498-75486643) | |
| 896-1032, gnl|bosTau2|chr9 (15968774-15968638) | |
| 896-1032, gnl|Hg17|chr15 (50032754-50032618) | |
| 896-1032, gnl|Mm7|chr9 (75492780-75492916) | |
| 1167-1355, gnl|bosTau2|chr9 (15966106-15965918) | |
| 1167-1355, gnl|canFam2|chr30 (20613560-20613763) | |
| 1167-1355, gnl|dasNov1|scaffold_113391 (5228-5431) | |
| 1167-1355, gnl|echTel1|scaffold_287949 (41749-41952) | |
| 1167-1355, gnl|fr1|chrUn (145318784-145318990) | |
| 1167-1355, gnl|galGal2|chr10 (9564578-9564773) | |
| 1167-1355, gnl|hg17|chr15 (50029290-50029493) | |
| 1167-1355, gnl|Hg17|chr15 (50029485-50029297) | |
| 1167-1355, gnl|loxAfr1|scaffold_176667 (472-662) | |
| 1167-1355, gnl|mm7|chr9 (75495411-75495208) | |
| 1167-1355, gnl|Mm7|chr9 (75495214-75495402) | |
| 1167-1355, gnl|monDom2|scaffold_12 (16292544-16292345) | |
| 1167-1355, gnl|oryCun1|scaffold_199764 (30402-30605) | |
| 1167-1355, gnl|panTro1|chr16 (50057873-50058076) | |
| 1167-1355, gnl|rheMac2|chr7 (30240555-30240758) | |
| 1167-1355, gnl|rn3|chr8 (80302468-80302265) | |
| 1167-1355, gnl|tetNig1|chr5 (9791445-9791632) | |
| 1167-1355, gnl|xenTro1|scaffold_27 (1280294-1280489) | |
| 1447-1685, gnl|bosTau2|chr9 (15954136-15953886) | |
| 1447-1685, gnl|canFam2|chr30 (20605309-20605629) | |
| 1447-1685, gnl|dasNov1|scaffold_89585 (3618-3294) | |
| 1447-1685, gnl|echTel1|scaffold_44296 (1588-1920) | |
| 1447-1685, gnl|galGal2|chr10 (9560860-9561216) | |
| 1447-1685, gnl|hg17|chr15 (50017497-50017824) | |
| 1447-1685, gnl|Hg17|chr15 (50017756-50017514) | |
| 1447-1685, gnl|mm7|chr9 (75503592-75503270) | |
| 1447-1685, gnl|Mm7|chr9 (75503328-75503573) | |
| 1447-1685, gnl|monDom2|scaffold_12 (16309682-16309348) | |
| 1447-1685, gnl|oryCun1|scaffold_199764 (21059-21408) | |
| 1447-1685, gnl|panTro1|chr16 (50046077-50046404) | |
| 1447-1685, gnl|rheMac2|chr7 (30228770-30229095) | |
| 1447-1685, gnl|rn3|chr8 (80309668-80309354) | |
| 1447-1685, gnl|xenTro1|scaffold_27 (1277723-1278013) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-371, gnl|bosTau2|chr9 (15980644-15980274) | |
| 1-371, gnl|Hg17|chr15 (50045608-50045238) | |
| 1-371, gnl|Mm7|chr9 (75482761-75483134) | |
| 572-717, gnl|bosTau2|chr9 (15974329-15974184) | |
| 572-717, gnl|Hg17|chr15 (50039533-50039388) | |
| 572-717, gnl|Mm7|chr9 (75486498-75486643) | |
| 896-1032, gnl|bosTau2|chr9 (15968774-15968638) | |
| 896-1032, gnl|Hg17|chr15 (50032754-50032618) | |
| 896-1032, gnl|Mm7|chr9 (75492780-75492916) | |
| 1167-1355, gnl|bosTau2|chr9 (15966106-15965918) | |
| 1167-1355, gnl|canFam2|chr30 (20613560-20613763) | |
| 1167-1355, gnl|dasNov1|scaffold_113391 (5228-5431) | |
| 1167-1355, gnl|echTel1|scaffold_287949 (41749-41952) | |
| 1167-1355, gnl|fr1|chrUn (145318784-145318990) | |
| 1167-1355, gnl|galGal2|chr10 (9564578-9564773) | |
| 1167-1355, gnl|hg17|chr15 (50029290-50029493) | |
| 1167-1355, gnl|Hg17|chr15 (50029485-50029297) | |
| 1167-1355, gnl|loxAfr1|scaffold_176667 (472-662) | |
| 1167-1355, gnl|mm7|chr9 (75495411-75495208) | |
| 1167-1355, gnl|Mm7|chr9 (75495214-75495402) | |
| 1167-1355, gnl|monDom2|scaffold_12 (16292544-16292345) | |
| 1167-1355, gnl|oryCun1|scaffold_199764 (30402-30605) | |
| 1167-1355, gnl|panTro1|chr16 (50057873-50058076) | |
| 1167-1355, gnl|rheMac2|chr7 (30240555-30240758) | |
| 1167-1355, gnl|rn3|chr8 (80302468-80302265) | |
| 1167-1355, gnl|tetNig1|chr5 (9791445-9791632) | |
| 1167-1355, gnl|xenTro1|scaffold_27 (1280294-1280489) | |
| 1447-1685, gnl|bosTau2|chr9 (15954136-15953886) | |
| 1447-1685, gnl|canFam2|chr30 (20605309-20605629) | |
| 1447-1685, gnl|dasNov1|scaffold_89585 (3618-3294) | |
| 1447-1685, gnl|echTel1|scaffold_44296 (1588-1920) | |
| 1447-1685, gnl|galGal2|chr10 (9560860-9561216) | |
| 1447-1685, gnl|hg17|chr15 (50017497-50017824) | |
| 1447-1685, gnl|Hg17|chr15 (50017756-50017514) | |
| 1447-1685, gnl|mm7|chr9 (75503592-75503270) | |
| 1447-1685, gnl|Mm7|chr9 (75503328-75503573) | |
| 1447-1685, gnl|monDom2|scaffold_12 (16309682-16309348) | |
| 1447-1685, gnl|oryCun1|scaffold_199764 (21059-21408) | |
| 1447-1685, gnl|panTro1|chr16 (50046077-50046404) | |
| 1447-1685, gnl|rheMac2|chr7 (30228770-30229095) | |
| 1447-1685, gnl|rn3|chr8 (80309668-80309354) | |
| 1447-1685, gnl|xenTro1|scaffold_27 (1277723-1278013) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| cbe (0.956938) | |
| gul (0.355177) | |
| pty (0.285429) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| aor (0.195274) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ret (0.128733) | |
| thg (0.126791) | |
| med (0.116252) | |
| jej (0.0989218) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbe (0.956938) | |
| gul (0.355177) | |
| pty (0.285429) | |
| fce (0.271592) | |
| lyg (0.266205) | |
| aor (0.195274) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| lin (0.145603) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| ret (0.128733) | |
| thg (0.126791) | |
| med (0.116252) | |
| jej (0.0989218) |