Ss1.1-Pig4-TMW8029I16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGCGGCGGGCGACGCGGACGGCGAGGAGGACGCAGGCCGCTGGGACGCGGACGCCGCCG CCTTCGGGGCCCCCGGGGGCCGCCCGCACGCCCGGGCGCCCGCGGCCGAGGAGGTGCGGC AGATGCTGGAGGGCAAGCCGCTGGCCGACCGGCTGCGGCCCGACGCGCTGCAGGACTTCG TGGGACAGGGCCGCGCCGTGGGGCCCGAGACGCTGCTGCGCTCGCTGCTGGAGGCCAACG AGGTGCCCTCGCTCATCCTATGGGGGCCGCCGGGCTGCGGCAAGACCACGCTGGCTCACA TCATCGCCAACAACAGCAAGAAACACAGCATAAGGTTCGTGACCTTGTCGGCAACCAGCG CCAAGACAACCGACGTGCGCGACGTCATCAAACAGGCTCAGAACGAGAAGAGCTTTTTCA AGAGGAAAACCATCCTTTTCATTGATGAGATTCATCGATTCAATAAATCTCAGCAGGACA CCTTCCTTCCTCACGTGGAGTGTGGGACCATCACCCTGATCGGGGCAACCACGGAGAACC CCTCCTTCCAGGTCAACGCCGCTCTGCTGAGCCGCTGCCGGGTGATCGTTCTCGAGAAGC TTCCAGTGGAGGCCGTGGTGACCATCCTTATGCGGGCCATCAACTCCCTGGGGATCCACG TCCTGGACTCCAGCCGCCCCGCCGACCCTCTGAGCCACAGCAGCAACAGCAGCTCCGAGC CCTCCGTGTTCATAGAGGACAAAGCCGTGGACACGCTGGCCCACCTCAGCGACGGGGACG CCCGGGCTGGACTCAACGGGCTGCAGCTGGCGGTGCTGGCCAGGCTCAGTGCCAGGAAGG TGTTCGGGAAGAAGACCGGGCAGACCTACCCTCCCGGTCGCGTCCTGGTCACTGAGGGTG ACGTCAAGGAGGGCCTCCAGCGCTCTCACATCCTCTACGACCGTGCAGGAGAGGAGCACT ACAACTGCATCTCGGCGCTGCACAAGGCCATGCGGGGCTCCGACCAGAACGCCGCGCTCT ACTGGCTGGGCCGCATGCTGGAGGGCGGCGAGGACCCGCTCTACGTGGCCAGGCGGCTCG TGAGGTTTGCCAGCGAGGACGTGGGTCTGGCAGACCCGTCTGCATTAACCCAGGCTGTGG CCGCCTACCAGGGCTGTCACTTCATCGGCATGCCCGAATGCGAGGTGCTCCTGGCCCAGT GCGTGGTCTACCTGGCCCGAGCCCCCAAGTCCATCGAGGTGTACAGCGCCTACAGCAACG TCAAGGCCTGCCTGCGGAGCCACCAGGGGCCCCTGCCCCCCGTCCCGCTGCACCTGCGCA ACGCGCCCACCAGGCTCATGAAGGATCTGGGCTACGGCCAGGGCTACAAGTACAACCCCG CGTACAGTGAGCCCGTGGACCAGGAGTACCTGCCCGAGGAGCTGCGGGGAGTGGATTTCT TTAAGCAGCGGAGGTGCTGACTCGGGGGCTGAGGCCGAGGAGGATGCGTCCTTTCCTGGG GGGCCAGAGAGTCACTGGATTGCGAGGTGGGTGGCCTGGTGGAAGTGACGGCCGCCCCAC GTTCGTGCTGGGAGGGTAGGAGGCCTGGCGGGGGCACAGCTGCTGCAGCTAAGCGTGTGG CGTTGAAATTGTGTTCAGTTGCACCCTGCGCGGTGTCATGCTCATGAGACATCTGGCAGC TCCGTGCAGTCGTTTAATGTTGTGAGGAGTTACCTATCTTGTCATGGAGTTTTAAGTCAC GACGTCACTTCAGAATTCGGTTCTGTAGGTTTTCTTTTCCTTTAAAAGATGTATATTCTA GGTAGTTTCACTTGGTAAAAATATGTAATTGTGATTTAATACTGCATAGTGTTTTGGGTA TTTTTTTTATATGCAAAGGTCTTATGAGCCAATAAAACTATTTCAAAGTAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGCGGCGGGCGACGCGGACGGCGAGGAGGACGCAGGCCGCTGGGACGCGGACGCCGCCG CCTTCGGGGCCCCCGGGGGCCGCCCGCACGCCCGGGCGCCCGCGGCCGAGGAGGTGCGGC AGATGCTGGAGGGCAAGCCGCTGGCCGACCGGCTGCGGCCCGACGCGCTGCAGGACTTCG TGGGACAGGGCCGCGCCGTGGGGCCCGAGACGCTGCTGCGCTCGCTGCTGGAGGCCAACG AGGTGCCCTCGCTCATCCTATGGGGGCCGCCGGGCTGCGGCAAGACCACGCTGGCTCACA TCATCGCCAACAACAGCAAGAAACACAGCATAAGGTTCGTGACCTTGTCGGCAACCAGCG CCAAGACAACCGACGTGCGCGACGTCATCAAACAGGCTCAGAACGAGAAGAGCTTTTTCA AGAGGAAAACCATCCTTTTCATTGATGAGATTCATCGATTCAATAAATCTCAGCAGGACA CCTTCCTTCCTCACGTGGAGTGTGGGACCATCACCCTGATCGGGGCAACCACGGAGAACC CCTCCTTCCAGGTCAACGCCGCTCTGCTGAGCCGCTGCCGGGTGATCGTTCTCGAGAAGC TTCCAGTGGAGGCCGTGGTGACCATCCTTATGCGGGCCATCAACTCCCTGGGGATCCACG TCCTGGACTCCAGCCGCCCCGCCGACCCTCTGAGCCACAGCAGCAACAGCAGCTCCGAGC CCTCCGTGTTCATAGAGGACAAAGCCGTGGACACGCTGGCCCACCTCAGCGACGGGGACG CCCGGGCTGGACTCAACGGGCTGCAGCTGGCGGTGCTGGCCAGGCTCAGTGCCAGGAAGG TGTTCGGGAAGAAGACCGGGCAGACCTACCCTCCCGGTCGCGTCCTGGTCACTGAGGGTG ACGTCAAGGAGGGCCTCCAGCGCTCTCACATCCTCTACGACCGTGCAGGAGAGGAGCACT ACAACTGCATCTCGGCGCTGCACAAGGCCATGCGGGGCTCCGACCAGAACGCCGCGCTCT ACTGGCTGGGCCGCATGCTGGAGGGCGGCGAGGACCCGCTCTACGTGGCCAGGCGGCTCG TGAGGTTTGCCAGCGAGGACGTGGGTCTGGCAGACCCGTCTGCATTAACCCAGGCTGTGG CCGCCTACCAGGGCTGTCACTTCATCGGCATGCCCGAATGCGAGGTGCTCCTGGCCCAGT GCGTGGTCTACCTGGCCCGAGCCCCCAAGTCCATCGAGGTGTACAGCGCCTACAGCAACG TCAAGGCCTGCCTGCGGAGCCACCAGGGGCCCCTGCCCCCCGTCCCGCTGCACCTGCGCA ACGCGCCCACCAGGCTCATGAAGGATCTGGGCTACGGCCAGGGCTACAAGTACAACCCCG CGTACAGTGAGCCCGTGGACCAGGAGTACCTGCCCGAGGAGCTGCGGGGAGTGGATTTCT TTAAGCAGCGGAGGTGCTGACTCGGGGGCTGAGGCCGAGGAGGATGCGTCCTTTCCTGGG GGGCCAGAGAGTCACTGGATTGCGAGGTGGGTGGCCTGGTGGAAGTGACGGCCGCCCCAC GTTCGTGCTGGGAGGGTAGGAGGCCTGGCGGGGGCACAGCTGCTGCAGCTAAGCGTGTGG CGTTGAAATTGTGTTCAGTTGCACCCTGCGCGGTGTCATGCTCATGAGACATCTGGCAGC TCCGTGCAGTCGTTTAATGTTGTGAGGAGTTACCTATCTTGTCATGGAGTTTTAAGTCAC GACGTCACTTCAGAATTCGGTTCTGTAGGTTTTCTTTTCCTTTAAAAGATGTATATTCTA GGTAGTTTCACTTGGTAAAAATATGTAATTGTGATTTAATACTGCATAGTGTTTTGGGTA TTTTTTTTATATGCAAAGGTCTTATGAGCCAATAAAACTATTTCAAAGTAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1784-1910, + strand, RNAz p=0.686622 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1784-1910, + strand, RNAz p=0.686622 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of AF218313, + |
| Aligned organism(s): 43 entry(ies) | More info |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
| 2-284, gnl|bosTau2|chr23 (41280886-41280610) | |
| 2-284, gnl|Hg17|chr6 (2711438-2711677) | |
| 469-719, gnl|bosTau2|chr23 (41278281-41278031) | |
| 469-719, gnl|canFam2|chr35 (6107165-6107400) | |
| 469-719, gnl|danRer3|chrNA (11584966-11584748) | |
| 469-719, gnl|dasNov1|scaffold_9290 (37321-37556) | |
| 469-719, gnl|echTel1|scaffold_277969 (68616-68381) | |
| 469-719, gnl|fr1|chrUn (319870118-319869884) | |
| 469-719, gnl|galGal2|chr2 (67358470-67358705) | |
| 469-719, gnl|hg17|chr6 (2715310-2715545) | |
| 469-719, gnl|Hg17|chr6 (2715344-2715595) | |
| 469-719, gnl|mm7|chr13 (32172263-32172498) | |
| 469-719, gnl|Mm7|chr13 (32172297-32172548) | |
| 469-719, gnl|monDom2|scaffold_3 (82205350-82205115) | |
| 469-719, gnl|oryCun1|scaffold_205147 (51231-51466) | |
| 469-719, gnl|panTro1|chr5 (2729195-2729430) | |
| 469-719, gnl|rheMac2|chr4 (2644827-2645062) | |
| 469-719, gnl|rn3|chr17 (38000554-38000319) | |
| 469-719, gnl|tetNig1|chr15_random (352227-352433) | |
| 469-719, gnl|xenTro1|scaffold_78 (681040-681257) | |
| 721-959, gnl|bosTau2|chr23 (41273376-41273137) | |
| 721-959, gnl|Hg17|chr6 (2724498-2724733) | |
| 721-959, gnl|Mm7|chr13 (32181802-32182034) | |
| 1183-1466, gnl|bosTau2|chr23 (41270307-41270024) | |
| 1183-1466, gnl|canFam2|chr35 (6126779-6127059) | |
| 1183-1466, gnl|danRer3|chrNA (11575905-11575632) | |
| 1183-1466, gnl|dasNov1|scaffold_9290 (52609-52888) | |
| 1183-1466, gnl|echTel1|scaffold_174554 (1142-864) | |
| 1183-1466, gnl|galGal2|chr2 (67373943-67374224) | |
| 1183-1466, gnl|hg17|chr6 (2730236-2730517) | |
| 1183-1466, gnl|Hg17|chr6 (2730238-2730524) | |
| 1183-1466, gnl|mm7|chr13 (32187428-32187708) | |
| 1183-1466, gnl|Mm7|chr13 (32187429-32187714) | |
| 1183-1466, gnl|monDom2|scaffold_3 (82183569-82183291) | |
| 1183-1466, gnl|oryCun1|scaffold_198167 (160694-160974) | |
| 1183-1466, gnl|panTro1|chr5 (2744118-2744399) | |
| 1183-1466, gnl|rheMac2|chr4 (2660020-2660301) | |
| 1183-1466, gnl|rn3|chr17 (37985661-37985381) | |
| 1183-1466, gnl|tetNig1|chr15_random (353541-353804) | |
| 1183-1466, gnl|xenTro1|scaffold_78 (715106-715374) | |
| 1587-1910, gnl|bosTau2|chr23 (41269956-41269634) | |
| 1587-1910, gnl|Hg17|chr6 (2730654-2730978) | |
| 1587-1910, gnl|Mm7|chr13 (32187833-32188156) |
| Aligned organism(s): 43 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-284, gnl|bosTau2|chr23 (41280886-41280610) | |
| 2-284, gnl|Hg17|chr6 (2711438-2711677) | |
| 469-719, gnl|bosTau2|chr23 (41278281-41278031) | |
| 469-719, gnl|canFam2|chr35 (6107165-6107400) | |
| 469-719, gnl|danRer3|chrNA (11584966-11584748) | |
| 469-719, gnl|dasNov1|scaffold_9290 (37321-37556) | |
| 469-719, gnl|echTel1|scaffold_277969 (68616-68381) | |
| 469-719, gnl|fr1|chrUn (319870118-319869884) | |
| 469-719, gnl|galGal2|chr2 (67358470-67358705) | |
| 469-719, gnl|hg17|chr6 (2715310-2715545) | |
| 469-719, gnl|Hg17|chr6 (2715344-2715595) | |
| 469-719, gnl|mm7|chr13 (32172263-32172498) | |
| 469-719, gnl|Mm7|chr13 (32172297-32172548) | |
| 469-719, gnl|monDom2|scaffold_3 (82205350-82205115) | |
| 469-719, gnl|oryCun1|scaffold_205147 (51231-51466) | |
| 469-719, gnl|panTro1|chr5 (2729195-2729430) | |
| 469-719, gnl|rheMac2|chr4 (2644827-2645062) | |
| 469-719, gnl|rn3|chr17 (38000554-38000319) | |
| 469-719, gnl|tetNig1|chr15_random (352227-352433) | |
| 469-719, gnl|xenTro1|scaffold_78 (681040-681257) | |
| 721-959, gnl|bosTau2|chr23 (41273376-41273137) | |
| 721-959, gnl|Hg17|chr6 (2724498-2724733) | |
| 721-959, gnl|Mm7|chr13 (32181802-32182034) | |
| 1183-1466, gnl|bosTau2|chr23 (41270307-41270024) | |
| 1183-1466, gnl|canFam2|chr35 (6126779-6127059) | |
| 1183-1466, gnl|danRer3|chrNA (11575905-11575632) | |
| 1183-1466, gnl|dasNov1|scaffold_9290 (52609-52888) | |
| 1183-1466, gnl|echTel1|scaffold_174554 (1142-864) | |
| 1183-1466, gnl|galGal2|chr2 (67373943-67374224) | |
| 1183-1466, gnl|hg17|chr6 (2730236-2730517) | |
| 1183-1466, gnl|Hg17|chr6 (2730238-2730524) | |
| 1183-1466, gnl|mm7|chr13 (32187428-32187708) | |
| 1183-1466, gnl|Mm7|chr13 (32187429-32187714) | |
| 1183-1466, gnl|monDom2|scaffold_3 (82183569-82183291) | |
| 1183-1466, gnl|oryCun1|scaffold_198167 (160694-160974) | |
| 1183-1466, gnl|panTro1|chr5 (2744118-2744399) | |
| 1183-1466, gnl|rheMac2|chr4 (2660020-2660301) | |
| 1183-1466, gnl|rn3|chr17 (37985661-37985381) | |
| 1183-1466, gnl|tetNig1|chr15_random (353541-353804) | |
| 1183-1466, gnl|xenTro1|scaffold_78 (715106-715374) | |
| 1587-1910, gnl|bosTau2|chr23 (41269956-41269634) | |
| 1587-1910, gnl|Hg17|chr6 (2730654-2730978) | |
| 1587-1910, gnl|Mm7|chr13 (32187833-32188156) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| cki (1.15664) | |
| che (0.68157) | |
| cst (0.560146) | |
| sto (0.539471) | |
| cut (0.509771) | |
| cje (0.495704) | |
| csk (0.422238) | |
| amn (0.417711) | |
| elu (0.385356) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| ssp (0.271039) | |
| cly (0.241284) | |
| ece (0.229305) | |
| col (0.195008) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ldo (0.0970026) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (1.15664) | |
| che (0.68157) | |
| cst (0.560146) | |
| sto (0.539471) | |
| cut (0.509771) | |
| cje (0.495704) | |
| csk (0.422238) | |
| amn (0.417711) | |
| elu (0.385356) | |
| sme (0.305437) | |
| nbm (0.297974) | |
| ssp (0.271039) | |
| cly (0.241284) | |
| ece (0.229305) | |
| col (0.195008) | |
| cmu (0.186393) | |
| fty (0.17584) | |
| duo (0.172801) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| nco (0.161734) | |
| csp (0.161186) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ldo (0.0970026) |