Non-Coding RNA Search

Ss1.1-Pig4-TMW8029I17.5

Sequence:


               
               TGCACAGTCCGGAAGCGCCCACACGTGTCCTCCCAACTCGGCTCTAGGCCCGTTGGTCCC
GCTGTTACCAGCAATGGGTCGCTCTCGCCGAACCGGCGCACACCGAGCGCACTCCCTGGC
CCGCCAGATGAAGGCGAAGCGGCGGCGGCCGGACCTCGATGAGATTCACCGCGAGCTGCG
GCCCCAGGTTGCCACAAGGACCCGACCAGACCCCGGCGCCGAGCCCGACCCCGACCTGCC
AGGGGGCGGCCTGCATCGCTGTCTGGCCTGCGCGAGATACTTCATCGATTCTGCCAACCT
GAAGACCCACTTCCGATCCAAAGACCACAAGAAAAGGTTGAAGCAGCTGAGTGTGGAGCC
CTACAGTCAGGAAGAGGCAGAGAGGGCAGCGGGTATGGGTTCCTATGTACCTCCCCAGCG
GCTGGCAGTGCCCACAGAAGTATCCACTGATGTCCCTGAGATGGACACATCTGCTTGACA
GATCCTGAGAATTCAAGGCAGAAGAGTTGCCCATGGACAGTGATGCAAGGGCCAGTCTGG
GAGAGACTGTACCAGTCTGTTTTGGCCCGGGGTTTGGGGAGTGGATGGCCTCTTCCCAGT
GCCCTCCCTCCCAATAAAATAACTGGATAAAGGGGGCTTGCCCCTGACTCTAACCCCCAG
GCCACTACTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCACAGTCCGGAAGCGCCCACACGTGTCCTCCCAACTCGGCTCTAGGCCCGTTGGTCCC
GCTGTTACCAGCAATGGGTCGCTCTCGCCGAACCGGCGCACACCGAGCGCACTCCCTGGC
CCGCCAGATGAAGGCGAAGCGGCGGCGGCCGGACCTCGATGAGATTCACCGCGAGCTGCG
GCCCCAGGTTGCCACAAGGACCCGACCAGACCCCGGCGCCGAGCCCGACCCCGACCTGCC
AGGGGGCGGCCTGCATCGCTGTCTGGCCTGCGCGAGATACTTCATCGATTCTGCCAACCT
GAAGACCCACTTCCGATCCAAAGACCACAAGAAAAGGTTGAAGCAGCTGAGTGTGGAGCC
CTACAGTCAGGAAGAGGCAGAGAGGGCAGCGGGTATGGGTTCCTATGTACCTCCCCAGCG
GCTGGCAGTGCCCACAGAAGTATCCACTGATGTCCCTGAGATGGACACATCTGCTTGACA
GATCCTGAGAATTCAAGGCAGAAGAGTTGCCCATGGACAGTGATGCAAGGGCCAGTCTGG
GAGAGACTGTACCAGTCTGTTTTGGCCCGGGGTTTGGGGAGTGGATGGCCTCTTCCCAGT
GCCCTCCCTCCCAATAAAATAACTGGATAAAGGGGGCTTGCCCCTGACTCTAACCCCCAG
GCCACTACTCCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61879255|ref|XP_585257.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61879255|ref|XP_585257.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               7-277, gnl|bosTau2|chr2 (79667643-79667373)
               

               
               7-277, gnl|Hg17|chr1 (26180546-26180820)
               

               
               7-277, gnl|Mm7|chr4 (133624013-133623733)
               


               
               335-672, gnl|bosTau2|chr2 (79666982-79666650)
               

               
               335-672, gnl|Hg17|chr1 (26181206-26181542)
               

               
               335-672, gnl|Mm7|chr4 (133623365-133623057)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-277, gnl|bosTau2|chr2 (79667643-79667373)
               

               
               7-277, gnl|Hg17|chr1 (26180546-26180820)
               

               
               7-277, gnl|Mm7|chr4 (133624013-133623733)
               


               
               335-672, gnl|bosTau2|chr2 (79666982-79666650)
               

               
               335-672, gnl|Hg17|chr1 (26181206-26181542)
               

               
               335-672, gnl|Mm7|chr4 (133623365-133623057)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               hyp (0.285673)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               ute (0.132784)
               

               
               ecc (0.115035)

	7-277, gnl\|bosTau2\|chr2 (79667643-79667373)
	7-277, gnl\|Hg17\|chr1 (26180546-26180820)
	7-277, gnl\|Mm7\|chr4 (133624013-133623733)

	335-672, gnl\|bosTau2\|chr2 (79666982-79666650)
	335-672, gnl\|Hg17\|chr1 (26181206-26181542)
	335-672, gnl\|Mm7\|chr4 (133623365-133623057)