Ss1.1-Pig4-TMW8029I22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGAGACCAAAGATAAGCAAATGTCATATTATTATAAATTTGCAAGAAGTTGTCCTATA TTTCATGAGACATTATTTTTGATAAGAACTGATAATTCTCTAATATGAGCGGGCAGCCGG GCGGCGGCTGGCGGGGTGTGAAGAAAAAAAATGACACTTCAGTGGGCGGCTGTTGCGACT TTTCTTTACGCTGAAATAGGACTCATTTTAATCTTCTGTCTACCTTTTATTCCTCCTCAG AGATGGCAGAAGATTTTTTCATTTAGCGTCTGGGGTAAAATTGCAACTTTCTGGAACAAG GCTTTTCTTACTATTATAGTCCTATTGATTGTTCTATTTCTAGATGCTGTAAGAGAAGTA AGAAAGTATTCCTCAGCTCATGCCATTGAAAGGAGCTCAGCTAGCAGACCTGCTGCCTAT GAACATACACAAATGAAACTCTTTAGGTCTCAAAGAAATCTTTACATTTCTGGATTTTCA TTATTTTTTTGGCTAGTGTTGAGACGCCTGGTTACCCTTATTACTCAGCTGGCAAAAGAG TTATCAAACAAAGGAGTACTTAAAAGTCAAGCAGAAAGTACCAACAAGGCTGCCAAAAAA TTCATGGAAGAGAATGAAAGACTAAAACGGCTTTTGAAAAACTATGGCAAAGAAGAAGAC CACATTTTGGAAGAAGAAAATAAAAAACTAGTCGAAGACAAGGAAAAACTGCAAACTGAA TTAAAGAAGGTTTCAGATGCCCTTTCTAAGGCACAAAACGATGTGATGACAATGAAGGTG CAATCAGAGCGACTTTCAAAAGAGTACGACTTACTCCTGAAAGAACACTCAGAACTTCAG GATCATGCACGGAAAGGCAGTAAGAAAGGCCTGTGAACCTTATGAAAGAAGATTGTGATA CACCATGTCAAGATGACAAATTTGTTATCATGTTAGCCTCTAGAAAATTTAAAATTCACT TCAGAAAAATATACCAGCCAGAATTTTTTGTAATGCTACATGTATAGGCTCTTATCATAA TGGCATTATCACAATATTTGATGTTCCAGACATATTGTAAAGCCTGTCTTCCAGCTCTGA AGTAAAATATAAGCATGTCAAACACCTTTGTTTAGATACTGATAGTAACACTGGTATATG GTGGCTGTTTACCAATAACAGGAAAAATTCATTAGCTAGTTATTTCCAAAATTAGATTTT TAAGTGCATGAAACCATTAAATAGCCTTGAAAGCTTCAGTGAATTTCCAGTAATAATAAT TACTTAATCAGATGATGATGTATTGGAAAATAGTATTCAATATCAGCAGATTTGTTCATA GGAAGATTAAATGAGGATAAATGATTAGAATTTAGCCACTATAGTTATCAGAAAGAGTTA GGAAGAGCAAAAAATAAACACAGTGACCTTAAGTTGTTTTTTTAAACCTGATTGTACTAT AGTTTACTCTCATAAGACAGCTATATTGATAATTATATTTTTGTTACTGTGCTTCTGCAC TTGTTGGACTATTTTTGTTGCATTTGTGTTAATAACACGTAATTAGTAAGCATTCTACTT CTTTAAAGTCCATCTTGGAATGGAGTTTACATCTATCTGCGTAACTGCCATAGCACAACT GAAATTATTTTGCAAGGTGAAATTTTTGACTTAGAAAGTTAATGTATAACATATCCAAAA AGCAGTGTTGCCCATTGCTGTGAGAGTTACTAATTATACAGACATTACCTCAAACATACA TACACTGGTGTCACAGTTTCTCTGAGATGTTTCTGTATTCTGAAAGCTATTTTTCCATTC AGCTATTCATTTAGTTTCCTTTAAAAGAGGATGATTGTAATATTAATGTTATTTAGGTTG TTCCAGTGTTTAGACTTGAAAGCCATCTTCCTTGTCTCATAAAAACCTAAATATAAAAGA AAATAGAAGATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGAGACCAAAGATAAGCAAATGTCATATTATTATAAATTTGCAAGAAGTTGTCCTATA TTTCATGAGACATTATTTTTGATAAGAACTGATAATTCTCTAATATGAGCGGGCAGCCGG GCGGCGGCTGGCGGGGTGTGAAGAAAAAAAATGACACTTCAGTGGGCGGCTGTTGCGACT TTTCTTTACGCTGAAATAGGACTCATTTTAATCTTCTGTCTACCTTTTATTCCTCCTCAG AGATGGCAGAAGATTTTTTCATTTAGCGTCTGGGGTAAAATTGCAACTTTCTGGAACAAG GCTTTTCTTACTATTATAGTCCTATTGATTGTTCTATTTCTAGATGCTGTAAGAGAAGTA AGAAAGTATTCCTCAGCTCATGCCATTGAAAGGAGCTCAGCTAGCAGACCTGCTGCCTAT GAACATACACAAATGAAACTCTTTAGGTCTCAAAGAAATCTTTACATTTCTGGATTTTCA TTATTTTTTTGGCTAGTGTTGAGACGCCTGGTTACCCTTATTACTCAGCTGGCAAAAGAG TTATCAAACAAAGGAGTACTTAAAAGTCAAGCAGAAAGTACCAACAAGGCTGCCAAAAAA TTCATGGAAGAGAATGAAAGACTAAAACGGCTTTTGAAAAACTATGGCAAAGAAGAAGAC CACATTTTGGAAGAAGAAAATAAAAAACTAGTCGAAGACAAGGAAAAACTGCAAACTGAA TTAAAGAAGGTTTCAGATGCCCTTTCTAAGGCACAAAACGATGTGATGACAATGAAGGTG CAATCAGAGCGACTTTCAAAAGAGTACGACTTACTCCTGAAAGAACACTCAGAACTTCAG GATCATGCACGGAAAGGCAGTAAGAAAGGCCTGTGAACCTTATGAAAGAAGATTGTGATA CACCATGTCAAGATGACAAATTTGTTATCATGTTAGCCTCTAGAAAATTTAAAATTCACT TCAGAAAAATATACCAGCCAGAATTTTTTGTAATGCTACATGTATAGGCTCTTATCATAA TGGCATTATCACAATATTTGATGTTCCAGACATATTGTAAAGCCTGTCTTCCAGCTCTGA AGTAAAATATAAGCATGTCAAACACCTTTGTTTAGATACTGATAGTAACACTGGTATATG GTGGCTGTTTACCAATAACAGGAAAAATTCATTAGCTAGTTATTTCCAAAATTAGATTTT TAAGTGCATGAAACCATTAAATAGCCTTGAAAGCTTCAGTGAATTTCCAGTAATAATAAT TACTTAATCAGATGATGATGTATTGGAAAATAGTATTCAATATCAGCAGATTTGTTCATA GGAAGATTAAATGAGGATAAATGATTAGAATTTAGCCACTATAGTTATCAGAAAGAGTTA GGAAGAGCAAAAAATAAACACAGTGACCTTAAGTTGTTTTTTTAAACCTGATTGTACTAT AGTTTACTCTCATAAGACAGCTATATTGATAATTATATTTTTGTTACTGTGCTTCTGCAC TTGTTGGACTATTTTTGTTGCATTTGTGTTAATAACACGTAATTAGTAAGCATTCTACTT CTTTAAAGTCCATCTTGGAATGGAGTTTACATCTATCTGCGTAACTGCCATAGCACAACT GAAATTATTTTGCAAGGTGAAATTTTTGACTTAGAAAGTTAATGTATAACATATCCAAAA AGCAGTGTTGCCCATTGCTGTGAGAGTTACTAATTATACAGACATTACCTCAAACATACA TACACTGGTGTCACAGTTTCTCTGAGATGTTTCTGTATTCTGAAAGCTATTTTTCCATTC AGCTATTCATTTAGTTTCCTTTAAAAGAGGATGATTGTAATATTAATGTTATTTAGGTTG TTCCAGTGTTTAGACTTGAAAGCCATCTTCCTTGTCTCATAAAAACCTAAATATAAAAGA AAATAGAAGATA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | More info |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
| 135-242, gnl|bosTau2|chr4 (20900277-20900384) | |
| 135-242, gnl|Hg17|chr7 (106815154-106815260) | |
| 135-242, gnl|Mm7|chr12 (29473617-29473499) | |
| 329-494, gnl|bosTau2|chr4 (20914664-20914828) | |
| 329-494, gnl|canFam2|chr18 (15997923-15997744) | |
| 329-494, gnl|danRer3|chrUn (145680852-145680695) | |
| 329-494, gnl|dasNov1|scaffold_158080 (1862-2046) | |
| 329-494, gnl|echTel1|scaffold_276615 (53754-53562) | |
| 329-494, gnl|fr1|chrUn (234621606-234621453) | |
| 329-494, gnl|galGal2|chr1 (8927277-8927096) | |
| 329-494, gnl|hg17|chr7 (106828297-106828481) | |
| 329-494, gnl|Hg17|chr7 (106828337-106828501) | |
| 329-494, gnl|loxAfr1|scaffold_30335 (4164-3978) | |
| 329-494, gnl|mm7|chr12 (29466165-29465984) | |
| 329-494, gnl|Mm7|chr12 (29466125-29465962) | |
| 329-494, gnl|monDom2|scaffold_22 (45030260-45030080) | |
| 329-494, gnl|oryCun1|scaffold_186713 (4581-4399) | |
| 329-494, gnl|panTro1|chr6 (108740558-108740742) | |
| 329-494, gnl|rheMac2|chr3 (145018425-145018609) | |
| 329-494, gnl|rn3|chr6 (49500303-49500122) | |
| 329-494, gnl|tetNig1|chr10 (9941629-9941792) | |
| 329-494, gnl|xenTro1|scaffold_452 (528211-528376) | |
| 630-739, gnl|bosTau2|chr4 (20921016-20921125) | |
| 630-739, gnl|canFam2|chr18 (15991043-15990926) | |
| 630-739, gnl|danRer3|chrUn (145678491-145678390) | |
| 630-739, gnl|dasNov1|scaffold_18998 (20651-20534) | |
| 630-739, gnl|echTel1|scaffold_276615 (40731-40614) | |
| 630-739, gnl|hg17|chr7 (106834788-106834905) | |
| 630-739, gnl|Hg17|chr7 (106834792-106834901) | |
| 630-739, gnl|loxAfr1|scaffold_24794 (38979-38862) | |
| 630-739, gnl|mm7|chr12 (29456423-29456309) | |
| 630-739, gnl|Mm7|chr12 (29456417-29456311) | |
| 630-739, gnl|monDom2|scaffold_22 (45023669-45023552) | |
| 630-739, gnl|oryCun1|scaffold_211794 (9555-9674) | |
| 630-739, gnl|panTro1|chr6 (108746864-108746981) | |
| 630-739, gnl|rheMac2|chr3 (145024224-145024341) | |
| 630-739, gnl|rn3|chr6 (49491021-49490904) | |
| 630-739, gnl|xenTro1|scaffold_452 (531664-531783) | |
| 838-1147, gnl|bosTau2|chr4 (20979459-20979771) | |
| 838-1147, gnl|canFam2|chr18 (15956649-15956278) | |
| 838-1147, gnl|echTel1|scaffold_296701 (53027-52666) | |
| 838-1147, gnl|hg17|chr7 (106852659-106853027) | |
| 838-1147, gnl|Hg17|chr7 (106852721-106853026) | |
| 838-1147, gnl|loxAfr1|scaffold_70316 (3288-3630) | |
| 838-1147, gnl|mm7|chr12 (29436173-29435858) | |
| 838-1147, gnl|Mm7|chr12 (29436128-29435773) | |
| 838-1147, gnl|monDom2|scaffold_22 (44959908-44959509) | |
| 838-1147, gnl|oryCun1|scaffold_88924 (10131-10483) | |
| 838-1147, gnl|panTro1|chr6 (108764703-108765071) | |
| 838-1147, gnl|rheMac2|chr3 (145042723-145043091) | |
| 838-1147, gnl|rn3|chr6 (49468552-49468244) | |
| 1383-1932, gnl|bosTau2|chr4 (20979773-20980341) | |
| 1383-1932, gnl|canFam2|chr18 (15956000-15955467) | |
| 1383-1932, gnl|echTel1|scaffold_296701 (52436-51827) | |
| 1383-1932, gnl|hg17|chr7 (106853266-106853833) | |
| 1383-1932, gnl|Hg17|chr7 (106853265-106853842) | |
| 1383-1932, gnl|loxAfr1|scaffold_70316 (3871-4426) | |
| 1383-1932, gnl|mm7|chr12 (29435621-29435118) | |
| 1383-1932, gnl|Mm7|chr12 (29435771-29435103) | |
| 1383-1932, gnl|monDom2|scaffold_22 (44959250-44958748) | |
| 1383-1932, gnl|oryCun1|scaffold_88924 (10719-11268) | |
| 1383-1932, gnl|panTro1|chr6 (108765311-108765880) | |
| 1383-1932, gnl|rheMac2|chr3 (145043330-145043874) | |
| 1383-1932, gnl|rn3|chr6 (49468007-49467504) |
| Aligned organism(s): 64 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 135-242, gnl|bosTau2|chr4 (20900277-20900384) | |
| 135-242, gnl|Hg17|chr7 (106815154-106815260) | |
| 135-242, gnl|Mm7|chr12 (29473617-29473499) | |
| 329-494, gnl|bosTau2|chr4 (20914664-20914828) | |
| 329-494, gnl|canFam2|chr18 (15997923-15997744) | |
| 329-494, gnl|danRer3|chrUn (145680852-145680695) | |
| 329-494, gnl|dasNov1|scaffold_158080 (1862-2046) | |
| 329-494, gnl|echTel1|scaffold_276615 (53754-53562) | |
| 329-494, gnl|fr1|chrUn (234621606-234621453) | |
| 329-494, gnl|galGal2|chr1 (8927277-8927096) | |
| 329-494, gnl|hg17|chr7 (106828297-106828481) | |
| 329-494, gnl|Hg17|chr7 (106828337-106828501) | |
| 329-494, gnl|loxAfr1|scaffold_30335 (4164-3978) | |
| 329-494, gnl|mm7|chr12 (29466165-29465984) | |
| 329-494, gnl|Mm7|chr12 (29466125-29465962) | |
| 329-494, gnl|monDom2|scaffold_22 (45030260-45030080) | |
| 329-494, gnl|oryCun1|scaffold_186713 (4581-4399) | |
| 329-494, gnl|panTro1|chr6 (108740558-108740742) | |
| 329-494, gnl|rheMac2|chr3 (145018425-145018609) | |
| 329-494, gnl|rn3|chr6 (49500303-49500122) | |
| 329-494, gnl|tetNig1|chr10 (9941629-9941792) | |
| 329-494, gnl|xenTro1|scaffold_452 (528211-528376) | |
| 630-739, gnl|bosTau2|chr4 (20921016-20921125) | |
| 630-739, gnl|canFam2|chr18 (15991043-15990926) | |
| 630-739, gnl|danRer3|chrUn (145678491-145678390) | |
| 630-739, gnl|dasNov1|scaffold_18998 (20651-20534) | |
| 630-739, gnl|echTel1|scaffold_276615 (40731-40614) | |
| 630-739, gnl|hg17|chr7 (106834788-106834905) | |
| 630-739, gnl|Hg17|chr7 (106834792-106834901) | |
| 630-739, gnl|loxAfr1|scaffold_24794 (38979-38862) | |
| 630-739, gnl|mm7|chr12 (29456423-29456309) | |
| 630-739, gnl|Mm7|chr12 (29456417-29456311) | |
| 630-739, gnl|monDom2|scaffold_22 (45023669-45023552) | |
| 630-739, gnl|oryCun1|scaffold_211794 (9555-9674) | |
| 630-739, gnl|panTro1|chr6 (108746864-108746981) | |
| 630-739, gnl|rheMac2|chr3 (145024224-145024341) | |
| 630-739, gnl|rn3|chr6 (49491021-49490904) | |
| 630-739, gnl|xenTro1|scaffold_452 (531664-531783) | |
| 838-1147, gnl|bosTau2|chr4 (20979459-20979771) | |
| 838-1147, gnl|canFam2|chr18 (15956649-15956278) | |
| 838-1147, gnl|echTel1|scaffold_296701 (53027-52666) | |
| 838-1147, gnl|hg17|chr7 (106852659-106853027) | |
| 838-1147, gnl|Hg17|chr7 (106852721-106853026) | |
| 838-1147, gnl|loxAfr1|scaffold_70316 (3288-3630) | |
| 838-1147, gnl|mm7|chr12 (29436173-29435858) | |
| 838-1147, gnl|Mm7|chr12 (29436128-29435773) | |
| 838-1147, gnl|monDom2|scaffold_22 (44959908-44959509) | |
| 838-1147, gnl|oryCun1|scaffold_88924 (10131-10483) | |
| 838-1147, gnl|panTro1|chr6 (108764703-108765071) | |
| 838-1147, gnl|rheMac2|chr3 (145042723-145043091) | |
| 838-1147, gnl|rn3|chr6 (49468552-49468244) | |
| 1383-1932, gnl|bosTau2|chr4 (20979773-20980341) | |
| 1383-1932, gnl|canFam2|chr18 (15956000-15955467) | |
| 1383-1932, gnl|echTel1|scaffold_296701 (52436-51827) | |
| 1383-1932, gnl|hg17|chr7 (106853266-106853833) | |
| 1383-1932, gnl|Hg17|chr7 (106853265-106853842) | |
| 1383-1932, gnl|loxAfr1|scaffold_70316 (3871-4426) | |
| 1383-1932, gnl|mm7|chr12 (29435621-29435118) | |
| 1383-1932, gnl|Mm7|chr12 (29435771-29435103) | |
| 1383-1932, gnl|monDom2|scaffold_22 (44959250-44958748) | |
| 1383-1932, gnl|oryCun1|scaffold_88924 (10719-11268) | |
| 1383-1932, gnl|panTro1|chr6 (108765311-108765880) | |
| 1383-1932, gnl|rheMac2|chr3 (145043330-145043874) | |
| 1383-1932, gnl|rn3|chr6 (49468007-49467504) |
| Expressed library(ies): 29 entry(ies) | More info |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
| tes (2.70158) | |
| ret (0.7724) | |
| fco (0.628832) | |
| rec (0.519211) | |
| ova (0.516529) | |
| bfe (0.449573) | |
| aor (0.390549) | |
| gul (0.355177) | |
| fbs (0.350693) | |
| isp (0.300752) | |
| fat (0.294855) | |
| liv (0.292569) | |
| spl (0.286369) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| mga (0.160205) | |
| eli (0.151814) | |
| lin (0.145603) | |
| ste (0.135208) | |
| pla (0.133672) | |
| sug (0.127291) | |
| thg (0.126791) | |
| jca (0.11396) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 29 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (2.70158) | |
| ret (0.7724) | |
| fco (0.628832) | |
| rec (0.519211) | |
| ova (0.516529) | |
| bfe (0.449573) | |
| aor (0.390549) | |
| gul (0.355177) | |
| fbs (0.350693) | |
| isp (0.300752) | |
| fat (0.294855) | |
| liv (0.292569) | |
| spl (0.286369) | |
| kid (0.259471) | |
| mgp (0.230681) | |
| cty (0.20816) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| fty (0.17584) | |
| mga (0.160205) | |
| eli (0.151814) | |
| lin (0.145603) | |
| ste (0.135208) | |
| pla (0.133672) | |
| sug (0.127291) | |
| thg (0.126791) | |
| jca (0.11396) | |
| spc (0.113366) | |
| jej (0.0989218) |