Ss1.1-Pig4-TMW8029J01.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAGTGTTAAAAAGCCACATACACTATTACAAAGAGTCAAAGCCTGCACGACTGAAGAG GATCAAGAGAAGCTGATGCAGATTACAAGTCTGCATTCACTGAATGCCTTCTTGCTCCCA ATTAAAACTGTGGGTGTGCAGGGTGACTGTCGTTCTTACAGTTACGTGTGTGGAATCTCC AGTAAAGATGAGCCTGACTGGGAATCTCTTATTTTCCTGGCTAGGCTTATACCTCGCATG TGTCACAACATTAACAGAGTTGTCTATATATTTGGCCCACCAGTGAAAGAACCTCCTACA GATGTTACTCCCACTTTCTTGACAACAGGGGTGCTGAGCACTTTACGCCAAGCTGATTTT GAGGCCCATAACATTCTCAGGGAATCTGGGTATGCTGGGAAAATCAGCCAGATGCCAGTG ATTTTGACACCATTACATTTTGATCGGGACCCACTTCAGAAGCAGCCTTCATGCCAGAGA TCTGTGGTTATTCGTACTTTTATTACTAGTGATTTCATGACTGGTATACCTGCAACCCCT GGCAATGAGATCCCTGTGGAGGTGGTGTTAAAGATGGTCACTGAGATTAAGAAGATTCCT GGTATTTCTCGAATTATGTATGACTTAACATCAAAGCCCCCAGGAACTACTGAGTGGGAG TAATAAACTTGTTCTGCAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAGTGTTAAAAAGCCACATACACTATTACAAAGAGTCAAAGCCTGCACGACTGAAGAG GATCAAGAGAAGCTGATGCAGATTACAAGTCTGCATTCACTGAATGCCTTCTTGCTCCCA ATTAAAACTGTGGGTGTGCAGGGTGACTGTCGTTCTTACAGTTACGTGTGTGGAATCTCC AGTAAAGATGAGCCTGACTGGGAATCTCTTATTTTCCTGGCTAGGCTTATACCTCGCATG TGTCACAACATTAACAGAGTTGTCTATATATTTGGCCCACCAGTGAAAGAACCTCCTACA GATGTTACTCCCACTTTCTTGACAACAGGGGTGCTGAGCACTTTACGCCAAGCTGATTTT GAGGCCCATAACATTCTCAGGGAATCTGGGTATGCTGGGAAAATCAGCCAGATGCCAGTG ATTTTGACACCATTACATTTTGATCGGGACCCACTTCAGAAGCAGCCTTCATGCCAGAGA TCTGTGGTTATTCGTACTTTTATTACTAGTGATTTCATGACTGGTATACCTGCAACCCCT GGCAATGAGATCCCTGTGGAGGTGGTGTTAAAGATGGTCACTGAGATTAAGAAGATTCCT GGTATTTCTCGAATTATGTATGACTTAACATCAAAGCCCCCAGGAACTACTGAGTGGGAG TAATAAACTTGTTCTGCAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 14-170, gnl|bosTau2|chr1 (71429174-71429019) | |
| 14-170, gnl|canFam2|chr23 (52686180-52686313) | |
| 14-170, gnl|danRer3|chr18 (36242286-36242419) | |
| 14-170, gnl|dasNov1|scaffold_9059 (5420-5553) | |
| 14-170, gnl|echTel1|scaffold_247508 (10866-10733) | |
| 14-170, gnl|galGal2|chr9 (22385966-22385833) | |
| 14-170, gnl|hg17|chr3 (157125730-157125863) | |
| 14-170, gnl|Hg17|chr3 (157125730-157125885) | |
| 14-170, gnl|mm7|chr3 (64147283-64147416) | |
| 14-170, gnl|Mm7|chr3 (64147283-64147437) | |
| 14-170, gnl|monDom2|scaffold_69 (2743199-2743066) | |
| 14-170, gnl|oryCun1|scaffold_174590 (18002-18135) | |
| 14-170, gnl|panTro1|chr2 (160270307-160270440) | |
| 14-170, gnl|rheMac2|chr2 (131735352-131735219) | |
| 14-170, gnl|rn3|chr2 (153779866-153779999) | |
| 14-170, gnl|tetNig1|chrUn_random (89593974-89594107) | |
| 14-170, gnl|xenTro1|scaffold_569 (777232-777099) | |
| 327-695, gnl|bosTau2|chr3 (60758880-60759247) | |
| 327-695, gnl|Hg17|chr4 (8294461-8294827) | |
| 327-695, gnl|Mm7|chr3 (64160095-64162519) | |
| 388-563, gnl|bosTau2|chr1 (71420483-71420308) | |
| 388-563, gnl|canFam2|chr23 (52697087-52697265) | |
| 388-563, gnl|danRer3|chr18 (36253314-36253500) | |
| 388-563, gnl|dasNov1|scaffold_88256 (5684-5862) | |
| 388-563, gnl|echTel1|scaffold_247508 (1686-1508) | |
| 388-563, gnl|fr1|chrUn (147348657-147348480) | |
| 388-563, gnl|galGal2|chr9 (22382254-22382076) | |
| 388-563, gnl|hg17|chr3 (157136828-157137006) | |
| 388-563, gnl|Hg17|chr3 (157136828-157137003) | |
| 388-563, gnl|loxAfr1|scaffold_96179 (1084-1262) | |
| 388-563, gnl|mm7|chr3 (64161196-64161374) | |
| 388-563, gnl|Mm7|chr3 (64161196-64161371) | |
| 388-563, gnl|monDom2|scaffold_69 (2735714-2735536) | |
| 388-563, gnl|oryCun1|scaffold_174590 (26820-26998) | |
| 388-563, gnl|panTro1|chr2 (160281418-160281596) | |
| 388-563, gnl|rheMac2|chr2 (131725307-131725129) | |
| 388-563, gnl|rn3|chr2 (153788643-153788821) | |
| 388-563, gnl|tetNig1|chrUn_random (89595423-89595600) | |
| 388-563, gnl|xenTro1|scaffold_569 (774488-774310) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 14-170, gnl|bosTau2|chr1 (71429174-71429019) | |
| 14-170, gnl|canFam2|chr23 (52686180-52686313) | |
| 14-170, gnl|danRer3|chr18 (36242286-36242419) | |
| 14-170, gnl|dasNov1|scaffold_9059 (5420-5553) | |
| 14-170, gnl|echTel1|scaffold_247508 (10866-10733) | |
| 14-170, gnl|galGal2|chr9 (22385966-22385833) | |
| 14-170, gnl|hg17|chr3 (157125730-157125863) | |
| 14-170, gnl|Hg17|chr3 (157125730-157125885) | |
| 14-170, gnl|mm7|chr3 (64147283-64147416) | |
| 14-170, gnl|Mm7|chr3 (64147283-64147437) | |
| 14-170, gnl|monDom2|scaffold_69 (2743199-2743066) | |
| 14-170, gnl|oryCun1|scaffold_174590 (18002-18135) | |
| 14-170, gnl|panTro1|chr2 (160270307-160270440) | |
| 14-170, gnl|rheMac2|chr2 (131735352-131735219) | |
| 14-170, gnl|rn3|chr2 (153779866-153779999) | |
| 14-170, gnl|tetNig1|chrUn_random (89593974-89594107) | |
| 14-170, gnl|xenTro1|scaffold_569 (777232-777099) | |
| 327-695, gnl|bosTau2|chr3 (60758880-60759247) | |
| 327-695, gnl|Hg17|chr4 (8294461-8294827) | |
| 327-695, gnl|Mm7|chr3 (64160095-64162519) | |
| 388-563, gnl|bosTau2|chr1 (71420483-71420308) | |
| 388-563, gnl|canFam2|chr23 (52697087-52697265) | |
| 388-563, gnl|danRer3|chr18 (36253314-36253500) | |
| 388-563, gnl|dasNov1|scaffold_88256 (5684-5862) | |
| 388-563, gnl|echTel1|scaffold_247508 (1686-1508) | |
| 388-563, gnl|fr1|chrUn (147348657-147348480) | |
| 388-563, gnl|galGal2|chr9 (22382254-22382076) | |
| 388-563, gnl|hg17|chr3 (157136828-157137006) | |
| 388-563, gnl|Hg17|chr3 (157136828-157137003) | |
| 388-563, gnl|loxAfr1|scaffold_96179 (1084-1262) | |
| 388-563, gnl|mm7|chr3 (64161196-64161374) | |
| 388-563, gnl|Mm7|chr3 (64161196-64161371) | |
| 388-563, gnl|monDom2|scaffold_69 (2735714-2735536) | |
| 388-563, gnl|oryCun1|scaffold_174590 (26820-26998) | |
| 388-563, gnl|panTro1|chr2 (160281418-160281596) | |
| 388-563, gnl|rheMac2|chr2 (131725307-131725129) | |
| 388-563, gnl|rn3|chr2 (153788643-153788821) | |
| 388-563, gnl|tetNig1|chrUn_random (89595423-89595600) | |
| 388-563, gnl|xenTro1|scaffold_569 (774488-774310) |
| Expressed library(ies): 8 entry(ies) | More info |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
| tes (0.415628) | |
| fli (0.202881) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| sug (0.127291) | |
| cty (0.10408) |
| Expressed library(ies): 8 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.415628) | |
| fli (0.202881) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| csp (0.161186) | |
| cag (0.151194) | |
| sug (0.127291) | |
| cty (0.10408) |