Ss1.1-Pig4-TMW8029J06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGCAAGACAGTTCATGTCTTGGTTACAAGATGTGGATGATAAATTTGACAAATTAAAG ACCTGTCTTTTAATGAGGCAGCAACATGAAGCTGCAGCTTTAAATGCCGTCCAGAGGTTA GAGTGGCAGCTCAAACTCCAGGAACTTGATCCTGCCACCTACAAATCCATCAGCATCTAT GAAATTCAGGAATTCTATGTTCCCCTTGTTGATGTTAACGATGACTTTGAATTGACTCCT ATATAGCAGCCGTTACTTCCTGGTGGGTTGTCTTAAAGGAATGAGTCTCAAGAGCGTTGT ACTGTGGAAAACTGCCTTTTGACAAAAATACGATGTCATGCCTTCACAGCTGTTAGTAAA GTTCAGCTAAAGTTGGTTACGTAGTAAACACTGTCATTTTATTAAAAATGGAACTTGGAT CTTAGATCCAAACAGTTCTAAATAAAAACTATTATTTATATAGGTGAAAGGTAATTGTTG CGTTCGAGCTTGTTGGCAGACTGTGATAGATATTTAAAAAGTTGAGAATCTGCTGATGGC GCTGGAAGTTGTTAGCAGTCTAAGTACAAGATAACCACTAGTGTTCAAATTGCATTCAAG CTTTATTAAAATATATCAGTAAACTAAAAGGTTCAGTTCCTACCAAATAGTTTCTAATGT GGAAGAAAAACTTGGCACAAAATTTCTTCAGTTTATTTTATCTGTAAGTTAATTGTACAG CTTTCCTTTTGAAAGTTTTAATATTGTCTTCCTTTTTAATAACTTATTTTATACATATTG TGCAGATGTAAATCTTGTAATTAATGGTCAAAAATGTATACAAAGGGATTGGTAGTCAAA ACATATACAAAGAAATAATTGTAAAACTGTTTTGTCTGATATTTTATTGGACCAAAGTTG TAGTTTGTATGGAGTGTAGTGATTGTGTGTTCAGATAGCAGAACTTTTAAAATAAGGCAT GCGTGTTTGAGTTAGCTTGTGTCCATCACCATAACCGTGAAGATTGTGACGTCGCTGCAC TGCATGCTCCTAGAGTTCAGCCCTCCATGGTGATGCCTGGAGCTAGTGTAAGGAGTTTCA CACCAGTCTCCCAGGAAGTACCTGTGACTTACTGTGTTGAACTTTTATTTAGAATTAGTC ATGCAAAGACAACAGCTCTTTCTTCATCTCACAATGGAGCCTATTCTTCTCTCCTCCCCA AAAATGCCTTTGAATGAAAATTCCAAAATTGTAAATGTCTATTTTAATACTCAAGTATGA AAGAATCTGTGAATATATGTAAATATGTTTAATAAATTTTGTTGGTCATGTTAAATCATT GTAAAACTTTTTTACATTGCTTAAATAAAATGTTTTAAGCTTAATAACCTTTGCACTTTT AAAATAAAAACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGCAAGACAGTTCATGTCTTGGTTACAAGATGTGGATGATAAATTTGACAAATTAAAG ACCTGTCTTTTAATGAGGCAGCAACATGAAGCTGCAGCTTTAAATGCCGTCCAGAGGTTA GAGTGGCAGCTCAAACTCCAGGAACTTGATCCTGCCACCTACAAATCCATCAGCATCTAT GAAATTCAGGAATTCTATGTTCCCCTTGTTGATGTTAACGATGACTTTGAATTGACTCCT ATATAGCAGCCGTTACTTCCTGGTGGGTTGTCTTAAAGGAATGAGTCTCAAGAGCGTTGT ACTGTGGAAAACTGCCTTTTGACAAAAATACGATGTCATGCCTTCACAGCTGTTAGTAAA GTTCAGCTAAAGTTGGTTACGTAGTAAACACTGTCATTTTATTAAAAATGGAACTTGGAT CTTAGATCCAAACAGTTCTAAATAAAAACTATTATTTATATAGGTGAAAGGTAATTGTTG CGTTCGAGCTTGTTGGCAGACTGTGATAGATATTTAAAAAGTTGAGAATCTGCTGATGGC GCTGGAAGTTGTTAGCAGTCTAAGTACAAGATAACCACTAGTGTTCAAATTGCATTCAAG CTTTATTAAAATATATCAGTAAACTAAAAGGTTCAGTTCCTACCAAATAGTTTCTAATGT GGAAGAAAAACTTGGCACAAAATTTCTTCAGTTTATTTTATCTGTAAGTTAATTGTACAG CTTTCCTTTTGAAAGTTTTAATATTGTCTTCCTTTTTAATAACTTATTTTATACATATTG TGCAGATGTAAATCTTGTAATTAATGGTCAAAAATGTATACAAAGGGATTGGTAGTCAAA ACATATACAAAGAAATAATTGTAAAACTGTTTTGTCTGATATTTTATTGGACCAAAGTTG TAGTTTGTATGGAGTGTAGTGATTGTGTGTTCAGATAGCAGAACTTTTAAAATAAGGCAT GCGTGTTTGAGTTAGCTTGTGTCCATCACCATAACCGTGAAGATTGTGACGTCGCTGCAC TGCATGCTCCTAGAGTTCAGCCCTCCATGGTGATGCCTGGAGCTAGTGTAAGGAGTTTCA CACCAGTCTCCCAGGAAGTACCTGTGACTTACTGTGTTGAACTTTTATTTAGAATTAGTC ATGCAAAGACAACAGCTCTTTCTTCATCTCACAATGGAGCCTATTCTTCTCTCCTCCCCA AAAATGCCTTTGAATGAAAATTCCAAAATTGTAAATGTCTATTTTAATACTCAAGTATGA AAGAATCTGTGAATATATGTAAATATGTTTAATAAATTTTGTTGGTCATGTTAAATCATT GTAAAACTTTTTTACATTGCTTAAATAAAATGTTTTAAGCTTAATAACCTTTGCACTTTT AAAATAAAAACG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 59-229, gnl|bosTau2|chr18 (12232326-12232496) | |
| 59-229, gnl|canFam2|chr5 (67225934-67225809) | |
| 59-229, gnl|canFam2|chr5 (67225935-67225809) | |
| 59-229, gnl|danRer3|chr7 (48817206-48817331) | |
| 59-229, gnl|danRer3|chr7 (48817205-48817331) | |
| 59-229, gnl|echTel1|scaffold_291586 (42486-42362) | |
| 59-229, gnl|echTel1|scaffold_291586 (42487-42362) | |
| 59-229, gnl|fr1|chrUn (95242179-95242054) | |
| 59-229, gnl|fr1|chrUn (95242180-95242054) | |
| 59-229, gnl|galGal2|chrUn (160319075-160318950) | |
| 59-229, gnl|galGal2|chrUn (160319076-160318950) | |
| 59-229, gnl|Hg17|chr16 (87862574-87862404) | |
| 59-229, gnl|hg17|chr5 (26705575-26705692) | |
| 59-229, gnl|hg17|chrX (145406650-145406775) | |
| 59-229, gnl|loxAfr1|scaffold_51772 (9218-9093) | |
| 59-229, gnl|loxAfr1|scaffold_51772 (9204-9093) | |
| 59-229, gnl|mm7|chr8 (121525845-121525970) | |
| 59-229, gnl|mm7|chr8 (121525844-121525970) | |
| 59-229, gnl|Mm7|chr8 (121526033-121525863) | |
| 59-229, gnl|monDom2|scaffold_23 (7143764-7143639) | |
| 59-229, gnl|monDom2|scaffold_23 (7143773-7143639) | |
| 59-229, gnl|oryCun1|scaffold_195634 (17368-17243) | |
| 59-229, gnl|oryCun1|scaffold_195634 (17369-17243) | |
| 59-229, gnl|panTro1|chr12 (84164998-84165123) | |
| 59-229, gnl|panTro1|chr4 (90755979-90755853) | |
| 59-229, gnl|rheMac2|chr20 (87378210-87378335) | |
| 59-229, gnl|rheMac2|chr6 (26694241-26694367) | |
| 59-229, gnl|rn3|chr19 (53214345-53214470) | |
| 59-229, gnl|rn3|chr19 (53214344-53214470) | |
| 59-229, gnl|tetNig1|chrUn_random (119890045-119890170) | |
| 59-229, gnl|tetNig1|chrUn_random (119890044-119890170) | |
| 59-229, gnl|xenTro1|scaffold_13 (2408216-2408341) | |
| 59-229, gnl|xenTro1|scaffold_13 (2408210-2408341) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 59-229, gnl|bosTau2|chr18 (12232326-12232496) | |
| 59-229, gnl|canFam2|chr5 (67225934-67225809) | |
| 59-229, gnl|canFam2|chr5 (67225935-67225809) | |
| 59-229, gnl|danRer3|chr7 (48817206-48817331) | |
| 59-229, gnl|danRer3|chr7 (48817205-48817331) | |
| 59-229, gnl|echTel1|scaffold_291586 (42486-42362) | |
| 59-229, gnl|echTel1|scaffold_291586 (42487-42362) | |
| 59-229, gnl|fr1|chrUn (95242179-95242054) | |
| 59-229, gnl|fr1|chrUn (95242180-95242054) | |
| 59-229, gnl|galGal2|chrUn (160319075-160318950) | |
| 59-229, gnl|galGal2|chrUn (160319076-160318950) | |
| 59-229, gnl|Hg17|chr16 (87862574-87862404) | |
| 59-229, gnl|hg17|chr5 (26705575-26705692) | |
| 59-229, gnl|hg17|chrX (145406650-145406775) | |
| 59-229, gnl|loxAfr1|scaffold_51772 (9218-9093) | |
| 59-229, gnl|loxAfr1|scaffold_51772 (9204-9093) | |
| 59-229, gnl|mm7|chr8 (121525845-121525970) | |
| 59-229, gnl|mm7|chr8 (121525844-121525970) | |
| 59-229, gnl|Mm7|chr8 (121526033-121525863) | |
| 59-229, gnl|monDom2|scaffold_23 (7143764-7143639) | |
| 59-229, gnl|monDom2|scaffold_23 (7143773-7143639) | |
| 59-229, gnl|oryCun1|scaffold_195634 (17368-17243) | |
| 59-229, gnl|oryCun1|scaffold_195634 (17369-17243) | |
| 59-229, gnl|panTro1|chr12 (84164998-84165123) | |
| 59-229, gnl|panTro1|chr4 (90755979-90755853) | |
| 59-229, gnl|rheMac2|chr20 (87378210-87378335) | |
| 59-229, gnl|rheMac2|chr6 (26694241-26694367) | |
| 59-229, gnl|rn3|chr19 (53214345-53214470) | |
| 59-229, gnl|rn3|chr19 (53214344-53214470) | |
| 59-229, gnl|tetNig1|chrUn_random (119890045-119890170) | |
| 59-229, gnl|tetNig1|chrUn_random (119890044-119890170) | |
| 59-229, gnl|xenTro1|scaffold_13 (2408216-2408341) | |
| 59-229, gnl|xenTro1|scaffold_13 (2408210-2408341) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| tra (0.369276) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cty (0.10408) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tra (0.369276) | |
| hea (0.204499) | |
| cmu (0.186393) | |
| fbs (0.175346) | |
| fco (0.157208) | |
| tbr (0.154178) | |
| spl (0.143184) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| cty (0.10408) |