Ss1.1-Pig4-TMW8029J12.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAACGACTCCTGGTCTCCATCACAGGATTCGGAATAGCTGGCGGGCTGAGAGGCCTCTT TTTCGCCCTCGCCCTGGACCCTCCTGCACTGCAGACCCCCCCGAGTCGGGGGCCCCGAAC CCCAGGGCTGAGGAGGTGGGCGAGGAGCGGACAGCACGGGGAAAGCACATCCCTTCCCAG TCCCTCTCGCTCCCGTAGCTTTGCCCCCAACTTTCTTTTCCCTGAGATCAGCTCCAGAGG CCTCCATCCGCTCCTCCACACTCTACCCCCTGTCCGAATACCCTCCTCGAGGAACCCCAC TAACGACTCCTGGTCTCCATCACAGGATTCGGAATAGCTGGCGGGCTGAGAGGCCTCTTT TTCGCCCTCGCCCTGGACCCTCCTGCACTGCAGACCCCCCCGAGTCGGGGGCCCCGAACC CCAGGGCTGAGGAGGACTCAACCAGGACTTTCCAAAAGCTGCCGCGGGGCCTTCCGATCC CCTCGGCCATCTGCCACGTGTGACCAGGCTGATGCAGCCAGTGAGGATTCTCTGCACCTT GACATTCAGAGGCTGAAGGAGAAGAGGGACATGCTGGACAAGGAGATCTCCCAATTCATA TCTGAAGGCTACAGTGTGGATGAACTGGAGGACCACATCTCCCAGCTCCACGAGTATAAT GACATCAAGGATGTCGGCCAGATGCTCCTGGGTAAACTAGCTGTGATCCGAGGTGTCACT ACCAAAGAGTTGTATCCAGAATTTGGCCTGGACATGGACGACTGAGCAGAGGCTCACAGC CCCGTGTTCACGGTCCACCGGGACAGGTGGATGTGGACGGGAGAAGCAGTGAGAGCCCAG CCAGAGCACCTGCAGCTTTCCAGCGAGGAAGCGTCAGAAGCCCTCTTCTAGAGATCCCAG ACTGAGCCAGGAAGGAGCCCAGGAGAGGCGGGGGCAGAAAGGAAGGGGTGTTCCCAGCTC CGAGGTTCCTGAAATGGCCCAGTGGCACCTGTGTATGTGTAGAAGTATCCTATTTGTAAA TAAACATGTGTGATGTTGGCACAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAACGACTCCTGGTCTCCATCACAGGATTCGGAATAGCTGGCGGGCTGAGAGGCCTCTT TTTCGCCCTCGCCCTGGACCCTCCTGCACTGCAGACCCCCCCGAGTCGGGGGCCCCGAAC CCCAGGGCTGAGGAGGTGGGCGAGGAGCGGACAGCACGGGGAAAGCACATCCCTTCCCAG TCCCTCTCGCTCCCGTAGCTTTGCCCCCAACTTTCTTTTCCCTGAGATCAGCTCCAGAGG CCTCCATCCGCTCCTCCACACTCTACCCCCTGTCCGAATACCCTCCTCGAGGAACCCCAC TAACGACTCCTGGTCTCCATCACAGGATTCGGAATAGCTGGCGGGCTGAGAGGCCTCTTT TTCGCCCTCGCCCTGGACCCTCCTGCACTGCAGACCCCCCCGAGTCGGGGGCCCCGAACC CCAGGGCTGAGGAGGACTCAACCAGGACTTTCCAAAAGCTGCCGCGGGGCCTTCCGATCC CCTCGGCCATCTGCCACGTGTGACCAGGCTGATGCAGCCAGTGAGGATTCTCTGCACCTT GACATTCAGAGGCTGAAGGAGAAGAGGGACATGCTGGACAAGGAGATCTCCCAATTCATA TCTGAAGGCTACAGTGTGGATGAACTGGAGGACCACATCTCCCAGCTCCACGAGTATAAT GACATCAAGGATGTCGGCCAGATGCTCCTGGGTAAACTAGCTGTGATCCGAGGTGTCACT ACCAAAGAGTTGTATCCAGAATTTGGCCTGGACATGGACGACTGAGCAGAGGCTCACAGC CCCGTGTTCACGGTCCACCGGGACAGGTGGATGTGGACGGGAGAAGCAGTGAGAGCCCAG CCAGAGCACCTGCAGCTTTCCAGCGAGGAAGCGTCAGAAGCCCTCTTCTAGAGATCCCAG ACTGAGCCAGGAAGGAGCCCAGGAGAGGCGGGGGCAGAAAGGAAGGGGTGTTCCCAGCTC CGAGGTTCCTGAAATGGCCCAGTGGCACCTGTGTATGTGTAGAAGTATCCTATTTGTAAA TAAACATGTGTGATGTTGGCACAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 9-817, - strand, RNAz p=0.938764 | |
| 699-816, - strand, RNAz p=0.770544 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 9-817, - strand, RNAz p=0.938764 | |
| 699-816, - strand, RNAz p=0.770544 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 9-287, gnl|bosTau2|chr11 (78166754-78167044) | |
| 9-287, gnl|canFam2|chr9 (58578693-58578187) | |
| 9-287, gnl|dasNov1|scaffold_66194 (7784-8332) | |
| 9-287, gnl|echTel1|scaffold_322938 (85224-84685) | |
| 9-287, gnl|hg17|chr9 (128118053-128118601) | |
| 9-287, gnl|Hg17|chr9 (128118112-128118368) | |
| 9-287, gnl|mm7|chr2 (32295374-32294897) | |
| 9-287, gnl|monDom2|scaffold_51 (2802104-2802774) | |
| 9-287, gnl|oryCun1|scaffold_175925 (174562-174044) | |
| 9-287, gnl|panTro1|chr11 (112952039-112952587) | |
| 9-287, gnl|rheMac2|chr15 (10603033-10602486) | |
| 9-287, gnl|rn3|chr3 (11308258-11307748) | |
| 308-435, gnl|bosTau2|chr11 (78166754-78166882) | |
| 308-435, gnl|canFam2|chr9 (58578380-58578615) | |
| 308-435, gnl|canFam2|chr9 (58578693-58578187) | |
| 308-435, gnl|dasNov1|scaffold_281425 (1211-1094) | |
| 308-435, gnl|dasNov1|scaffold_66194 (8098-7870) | |
| 308-435, gnl|dasNov1|scaffold_66194 (7784-8332) | |
| 308-435, gnl|echTel1|scaffold_322938 (84933-85151) | |
| 308-435, gnl|echTel1|scaffold_322938 (85224-84685) | |
| 308-435, gnl|hg17|chr15 (70684041-70684251) | |
| 308-435, gnl|hg17|chr6 (22295457-22295579) | |
| 308-435, gnl|hg17|chr9 (128118053-128118601) | |
| 308-435, gnl|Hg17|chr9 (128118112-128118236) | |
| 308-435, gnl|mm7|chr2 (32295106-32295295) | |
| 308-435, gnl|mm7|chr2 (32295374-32294897) | |
| 308-435, gnl|Mm7|chr2 (32295313-32295196) | |
| 308-435, gnl|monDom2|scaffold_51 (2802458-2802182) | |
| 308-435, gnl|monDom2|scaffold_51 (2802104-2802774) | |
| 308-435, gnl|oryCun1|scaffold_122855 (6253-6131) | |
| 308-435, gnl|oryCun1|scaffold_175925 (174291-174513) | |
| 308-435, gnl|oryCun1|scaffold_175925 (174562-174044) | |
| 308-435, gnl|panTro1|chr11 (112952331-112952121) | |
| 308-435, gnl|panTro1|chr11 (112952039-112952587) | |
| 308-435, gnl|panTro1|chr5 (22708750-22708872) | |
| 308-435, gnl|rheMac2|chr15 (10603033-10602486) | |
| 308-435, gnl|rheMac2|chr4 (22157318-22157440) | |
| 308-435, gnl|rheMac2|chr7 (51249871-51250082) | |
| 308-435, gnl|rn3|chr3 (11307977-11308179) | |
| 308-435, gnl|rn3|chr3 (11308258-11307748) | |
| 484-605, gnl|bosTau2|chr11 (78169470-78169591) | |
| 484-605, gnl|Hg17|chr9 (128126343-128126464) | |
| 484-605, gnl|Mm7|chr2 (32289118-32288997) | |
| 699-919, gnl|bosTau2|chr11 (78173336-78173548) | |
| 699-919, gnl|canFam2|chr9 (58573937-58573739) | |
| 699-919, gnl|dasNov1|scaffold_32386 (3732-3534) | |
| 699-919, gnl|echTel1|scaffold_203861 (5464-5645) | |
| 699-919, gnl|galGal2|chr17 (5751150-5751361) | |
| 699-919, gnl|hg17|chr9 (128130484-128130680) | |
| 699-919, gnl|Hg17|chr9 (128130483-128130701) | |
| 699-919, gnl|loxAfr1|scaffold_6293 (3954-4153) | |
| 699-919, gnl|mm7|chr2 (32286445-32286253) | |
| 699-919, gnl|Mm7|chr2 (32286444-32286212) | |
| 699-919, gnl|oryCun1|scaffold_127238 (4003-4193) | |
| 699-919, gnl|panTro1|chr11 (112964500-112964695) | |
| 699-919, gnl|rheMac2|chr15 (10590390-10590194) | |
| 699-919, gnl|rn3|chr3 (11299428-11299236) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 9-287, gnl|bosTau2|chr11 (78166754-78167044) | |
| 9-287, gnl|canFam2|chr9 (58578693-58578187) | |
| 9-287, gnl|dasNov1|scaffold_66194 (7784-8332) | |
| 9-287, gnl|echTel1|scaffold_322938 (85224-84685) | |
| 9-287, gnl|hg17|chr9 (128118053-128118601) | |
| 9-287, gnl|Hg17|chr9 (128118112-128118368) | |
| 9-287, gnl|mm7|chr2 (32295374-32294897) | |
| 9-287, gnl|monDom2|scaffold_51 (2802104-2802774) | |
| 9-287, gnl|oryCun1|scaffold_175925 (174562-174044) | |
| 9-287, gnl|panTro1|chr11 (112952039-112952587) | |
| 9-287, gnl|rheMac2|chr15 (10603033-10602486) | |
| 9-287, gnl|rn3|chr3 (11308258-11307748) | |
| 308-435, gnl|bosTau2|chr11 (78166754-78166882) | |
| 308-435, gnl|canFam2|chr9 (58578380-58578615) | |
| 308-435, gnl|canFam2|chr9 (58578693-58578187) | |
| 308-435, gnl|dasNov1|scaffold_281425 (1211-1094) | |
| 308-435, gnl|dasNov1|scaffold_66194 (8098-7870) | |
| 308-435, gnl|dasNov1|scaffold_66194 (7784-8332) | |
| 308-435, gnl|echTel1|scaffold_322938 (84933-85151) | |
| 308-435, gnl|echTel1|scaffold_322938 (85224-84685) | |
| 308-435, gnl|hg17|chr15 (70684041-70684251) | |
| 308-435, gnl|hg17|chr6 (22295457-22295579) | |
| 308-435, gnl|hg17|chr9 (128118053-128118601) | |
| 308-435, gnl|Hg17|chr9 (128118112-128118236) | |
| 308-435, gnl|mm7|chr2 (32295106-32295295) | |
| 308-435, gnl|mm7|chr2 (32295374-32294897) | |
| 308-435, gnl|Mm7|chr2 (32295313-32295196) | |
| 308-435, gnl|monDom2|scaffold_51 (2802458-2802182) | |
| 308-435, gnl|monDom2|scaffold_51 (2802104-2802774) | |
| 308-435, gnl|oryCun1|scaffold_122855 (6253-6131) | |
| 308-435, gnl|oryCun1|scaffold_175925 (174291-174513) | |
| 308-435, gnl|oryCun1|scaffold_175925 (174562-174044) | |
| 308-435, gnl|panTro1|chr11 (112952331-112952121) | |
| 308-435, gnl|panTro1|chr11 (112952039-112952587) | |
| 308-435, gnl|panTro1|chr5 (22708750-22708872) | |
| 308-435, gnl|rheMac2|chr15 (10603033-10602486) | |
| 308-435, gnl|rheMac2|chr4 (22157318-22157440) | |
| 308-435, gnl|rheMac2|chr7 (51249871-51250082) | |
| 308-435, gnl|rn3|chr3 (11307977-11308179) | |
| 308-435, gnl|rn3|chr3 (11308258-11307748) | |
| 484-605, gnl|bosTau2|chr11 (78169470-78169591) | |
| 484-605, gnl|Hg17|chr9 (128126343-128126464) | |
| 484-605, gnl|Mm7|chr2 (32289118-32288997) | |
| 699-919, gnl|bosTau2|chr11 (78173336-78173548) | |
| 699-919, gnl|canFam2|chr9 (58573937-58573739) | |
| 699-919, gnl|dasNov1|scaffold_32386 (3732-3534) | |
| 699-919, gnl|echTel1|scaffold_203861 (5464-5645) | |
| 699-919, gnl|galGal2|chr17 (5751150-5751361) | |
| 699-919, gnl|hg17|chr9 (128130484-128130680) | |
| 699-919, gnl|Hg17|chr9 (128130483-128130701) | |
| 699-919, gnl|loxAfr1|scaffold_6293 (3954-4153) | |
| 699-919, gnl|mm7|chr2 (32286445-32286253) | |
| 699-919, gnl|Mm7|chr2 (32286444-32286212) | |
| 699-919, gnl|oryCun1|scaffold_127238 (4003-4193) | |
| 699-919, gnl|panTro1|chr11 (112964500-112964695) | |
| 699-919, gnl|rheMac2|chr15 (10590390-10590194) | |
| 699-919, gnl|rn3|chr3 (11299428-11299236) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| ton (0.351) | |
| cag (0.302389) | |
| eru (0.240096) | |
| col (0.195008) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| che (0.136314) | |
| cov (0.132153) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ecc (0.115035) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ton (0.351) | |
| cag (0.302389) | |
| eru (0.240096) | |
| col (0.195008) | |
| nlu (0.191681) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| fhi (0.169578) | |
| lnt (0.142308) | |
| che (0.136314) | |
| cov (0.132153) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ecc (0.115035) |