Non-Coding RNA Search

Ss1.1-Pig4-TMW8029J17.3

Sequence:


               
               TGCGTGAAAAGGACAGAGAAATAACTAAGCACATGGACTGGAAATTGGACAGGAGGAAGG
AGAAAACAGAGTCACATGTGCTACAGGAGGAAGGGGTCACCCCAGAGGACACGGGTGAAG
ATGGCATCTCTGAAAGCTTCCAGCTTCTACAGATGGATGTGGACTGTGTGCAGTTTGGTG
AGGAGACCCTGCCCACAGGCAGTGCAGTTTGGTGCTCGAAAAATGTCCAAAGAAAACAGA
GACACTGGGAAAAGATAGTTGCAGCAAAGAAGAGTAAAAGAAAACAAGAGAAAGAAAGAA
GAAAAGCCAACCGTGTAGAAAATTCAGGCATCTGCCCTCAGCACAGCAAACGTTTTCTGA
GATCCTTAACCAAGGAAAAACTTTTGGGAGCCAGACATTCAGGACCAAGACTCTGTATTG
ATTTGAGTATGACCCACCACATGTCTAAGAAGGAATTAAGTAGACTGGCTGGACAGATCC
GAAGGTTGTATGGTTCAAATAAAAAAGCTGACAGGCCATTTTGGATCACCCTCACTGGAT
TCGCCACAGATAGTCCCCTATATGAAGAGTGTTTGAGGATGAATGATGGATTTTCTAGTT
ATCTGCTAGACATAACAGAAGAAGACTGCTTTAGTTTATTTCCCCTGGAAACCCTCGTGT
ACCTGACTCCTGATTCAGAACATGCTCTTGAAGATGTTGATCTAAACACAGTTTACATCC
TTGGTGGACTTGTGGACGAAAGCATTCAGAAGAAGGTGACATTTCAAAAGGCCCAAGAGC
ACTCTGTCAAGACTGCCCGCTTGCCAATCCAGGAATACATGGTCAGACGCCAGAATGGGA
AAAACTATCATTCAGAGATACTGGCCATCAATCAAGTATTTGATATCCTGTCCACTTACT
TTGAGACTCAAAACTGGGCTGAAGCATTGAAGAAAGGAGTTTCTTCCAGAAAAGGCTATG
TTCTTCAGAGCTCAGCGGAATGAGGGACAGTCTAAGATTGTGGCTGCAGGAGGTGAAGTT
GCTCTGGTTGCCTTGACCAAAGAGCAGAGCCAAGGATGGTGCTGGTAGCACTCATTGCCT
TGACTTGACATCTTGGCTCTTCCTTGGGAAAGGAGTTACTAACAGGGACCACACTTTACG
CTGTTTTTATCTCCCATAGTGCCTGGCTCACAGGAAGTGCCCAGATATATGTTGACTGAC
CAAAAAGTTTACATACCAATGAATTAGCCCTAAAATTACATGGCTTTGGATGTGCTGATC
CTCTTTTGTATGTCTATTTGTGAAATACCTGTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGTGAAAAGGACAGAGAAATAACTAAGCACATGGACTGGAAATTGGACAGGAGGAAGG
AGAAAACAGAGTCACATGTGCTACAGGAGGAAGGGGTCACCCCAGAGGACACGGGTGAAG
ATGGCATCTCTGAAAGCTTCCAGCTTCTACAGATGGATGTGGACTGTGTGCAGTTTGGTG
AGGAGACCCTGCCCACAGGCAGTGCAGTTTGGTGCTCGAAAAATGTCCAAAGAAAACAGA
GACACTGGGAAAAGATAGTTGCAGCAAAGAAGAGTAAAAGAAAACAAGAGAAAGAAAGAA
GAAAAGCCAACCGTGTAGAAAATTCAGGCATCTGCCCTCAGCACAGCAAACGTTTTCTGA
GATCCTTAACCAAGGAAAAACTTTTGGGAGCCAGACATTCAGGACCAAGACTCTGTATTG
ATTTGAGTATGACCCACCACATGTCTAAGAAGGAATTAAGTAGACTGGCTGGACAGATCC
GAAGGTTGTATGGTTCAAATAAAAAAGCTGACAGGCCATTTTGGATCACCCTCACTGGAT
TCGCCACAGATAGTCCCCTATATGAAGAGTGTTTGAGGATGAATGATGGATTTTCTAGTT
ATCTGCTAGACATAACAGAAGAAGACTGCTTTAGTTTATTTCCCCTGGAAACCCTCGTGT
ACCTGACTCCTGATTCAGAACATGCTCTTGAAGATGTTGATCTAAACACAGTTTACATCC
TTGGTGGACTTGTGGACGAAAGCATTCAGAAGAAGGTGACATTTCAAAAGGCCCAAGAGC
ACTCTGTCAAGACTGCCCGCTTGCCAATCCAGGAATACATGGTCAGACGCCAGAATGGGA
AAAACTATCATTCAGAGATACTGGCCATCAATCAAGTATTTGATATCCTGTCCACTTACT
TTGAGACTCAAAACTGGGCTGAAGCATTGAAGAAAGGAGTTTCTTCCAGAAAAGGCTATG
TTCTTCAGAGCTCAGCGGAATGAGGGACAGTCTAAGATTGTGGCTGCAGGAGGTGAAGTT
GCTCTGGTTGCCTTGACCAAAGAGCAGAGCCAAGGATGGTGCTGGTAGCACTCATTGCCT
TGACTTGACATCTTGGCTCTTCCTTGGGAAAGGAGTTACTAACAGGGACCACACTTTACG
CTGTTTTTATCTCCCATAGTGCCTGGCTCACAGGAAGTGCCCAGATATATGTTGACTGAC
CAAAAAGTTTACATACCAATGAATTAGCCCTAAAATTACATGGCTTTGGATGTGCTGATC
CTCTTTTGTATGTCTATTTGTGAAATACCTGTTCTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55957247|emb|CAI13882.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55957247|emb|CAI13882.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-159, - strand, RNAz p=0.512027

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-159, - strand, RNAz p=0.512027

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-218, gnl|bosTau2|chr8 (28958544-28958757)
               

               
               1-218, gnl|Hg17|chr9 (37751902-37752114)
               

               
               1-218, gnl|Mm7|chr4 (45314248-45314441)
               


               
               326-453, gnl|bosTau2|chr8 (28959985-28960112)
               

               
               326-453, gnl|Hg17|chr9 (37753624-37753751)
               

               
               326-453, gnl|Mm7|chr4 (45318076-45318203)
               


               
               875-1290, gnl|bosTau2|chr8 (28968891-28969297)
               

               
               875-1290, gnl|Hg17|chr9 (37767596-37768601)
               

               
               875-1290, gnl|Mm7|chr4 (45328824-45329230)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-218, gnl|bosTau2|chr8 (28958544-28958757)
               

               
               1-218, gnl|Hg17|chr9 (37751902-37752114)
               

               
               1-218, gnl|Mm7|chr4 (45314248-45314441)
               


               
               326-453, gnl|bosTau2|chr8 (28959985-28960112)
               

               
               326-453, gnl|Hg17|chr9 (37753624-37753751)
               

               
               326-453, gnl|Mm7|chr4 (45318076-45318203)
               


               
               875-1290, gnl|bosTau2|chr8 (28968891-28969297)
               

               
               875-1290, gnl|Hg17|chr9 (37767596-37768601)
               

               
               875-1290, gnl|Mm7|chr4 (45328824-45329230)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               ski (0.146735)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               cmu (0.186393)
               

               
               ski (0.146735)
               

               
               med (0.116252)

	1-218, gnl\|bosTau2\|chr8 (28958544-28958757)
	1-218, gnl\|Hg17\|chr9 (37751902-37752114)
	1-218, gnl\|Mm7\|chr4 (45314248-45314441)

	326-453, gnl\|bosTau2\|chr8 (28959985-28960112)
	326-453, gnl\|Hg17\|chr9 (37753624-37753751)
	326-453, gnl\|Mm7\|chr4 (45318076-45318203)

	875-1290, gnl\|bosTau2\|chr8 (28968891-28969297)
	875-1290, gnl\|Hg17\|chr9 (37767596-37768601)
	875-1290, gnl\|Mm7\|chr4 (45328824-45329230)