Non-Coding RNA Search

Ss1.1-Pig4-TMW8029J19.5

Sequence:


               
               GAGGTTCAGGTCTCTGATGCAGGCTGTGTAGGAGATGGAAAGGAGGCACCGCAACCTGGG
CCTCAGCATGCTGTTTCAGCCCAAGTTGACTGATACAAGAGCTTATGGAAAAATGTAAAT
TCCTGCCTCTTCCCATGGAACTAGTCTTCAGGGAAGAAAGGAAGAGGGAAGTTCCCAGAA
GTAATGCCATTGCAGGAAAATCCAGTCTGCTTGTGGATCTCCAGGACAAGTCCCTGAACT
TGGCATAAAAATCCTGAAGTGTTGCACCAGGCCAAAAGTTAGTTGCCCTAGGGAAAGATG
CACAGGCTGGAATTATAAGGAAATTAGACATTTTAATTTTATTTGTGTGACTATTGCATG
TAGGGCACTGTGCCAAAACTTCTCTAGGCTTCATAGAGCTTAGAATTAGAGCAATGGGCA
GACGCAGAAGAAAAGGACCCTGGGGACCAGACTTAACACTGTAGTCTCAGGTAACATGAG
ACCGTAGGAGCAGAGGGGGAACATTGCCCAGCGCACCTAAGTGACTGCAGGACTAACACT
TTAATTATACATTTCTCAGTCAAGCATTTGGACATATATCCTGGCTACAAATGGGCTTAT
AGTTTCCAAATACAGTTGGACCTAAAACTCTGCTTTGATGGCTAAGTGATGTGAACCTGA
CCAGAAAAGAATGACCAAGAGTGTAACAGAGCTCTCCTGAGAAACAGAATGAAGAGGATA
TATGTGTGTATGTGTGTGTGTATGTATGATATATATGATATACATATTACCTGAGAGAGA
GACTGAGACAAAAACAAAAATAGTTATTTCAAGAGAATGACTCATTTGATTGTGGGGCTG
TTAAGTCAAATCTGCGGGGTAGACCAATAGGCTGGAGACCCAGGGAAGAGTCCATGTTGA
AGCTCATGTCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGGTTCAGGTCTCTGATGCAGGCTGTGTAGGAGATGGAAAGGAGGCACCGCAACCTGGG
CCTCAGCATGCTGTTTCAGCCCAAGTTGACTGATACAAGAGCTTATGGAAAAATGTAAAT
TCCTGCCTCTTCCCATGGAACTAGTCTTCAGGGAAGAAAGGAAGAGGGAAGTTCCCAGAA
GTAATGCCATTGCAGGAAAATCCAGTCTGCTTGTGGATCTCCAGGACAAGTCCCTGAACT
TGGCATAAAAATCCTGAAGTGTTGCACCAGGCCAAAAGTTAGTTGCCCTAGGGAAAGATG
CACAGGCTGGAATTATAAGGAAATTAGACATTTTAATTTTATTTGTGTGACTATTGCATG
TAGGGCACTGTGCCAAAACTTCTCTAGGCTTCATAGAGCTTAGAATTAGAGCAATGGGCA
GACGCAGAAGAAAAGGACCCTGGGGACCAGACTTAACACTGTAGTCTCAGGTAACATGAG
ACCGTAGGAGCAGAGGGGGAACATTGCCCAGCGCACCTAAGTGACTGCAGGACTAACACT
TTAATTATACATTTCTCAGTCAAGCATTTGGACATATATCCTGGCTACAAATGGGCTTAT
AGTTTCCAAATACAGTTGGACCTAAAACTCTGCTTTGATGGCTAAGTGATGTGAACCTGA
CCAGAAAAGAATGACCAAGAGTGTAACAGAGCTCTCCTGAGAAACAGAATGAAGAGGATA
TATGTGTGTATGTGTGTGTGTATGTATGATATATATGATATACATATTACCTGAGAGAGA
GACTGAGACAAAAACAAAAATAGTTATTTCAAGAGAATGACTCATTTGATTGTGGGGCTG
TTAAGTCAAATCTGCGGGGTAGACCAATAGGCTGGAGACCCAGGGAAGAGTCCATGTTGA
AGCTCATGTCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               714-825, - strand, RNAz p=0.822333

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               714-825, - strand, RNAz p=0.822333

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               151-540, gnl|bosTau2|chr7 (3006239-3006622)
               


               
               682-906, gnl|bosTau2|chr24 (14158944-14159173)
               

               
               682-906, gnl|hg17|chr18 (35296254-35296540)
               

               
               682-906, gnl|panTro1|chr17 (31480023-31480309)
               

               
               682-906, gnl|rheMac2|chr18 (32410072-32410368)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               151-540, gnl|bosTau2|chr7 (3006239-3006622)
               


               
               682-906, gnl|bosTau2|chr24 (14158944-14159173)
               

               
               682-906, gnl|hg17|chr18 (35296254-35296540)
               

               
               682-906, gnl|panTro1|chr17 (31480023-31480309)
               

               
               682-906, gnl|rheMac2|chr18 (32410072-32410368)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               lun (0.150489)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (0.150489)

	151-540, gnl\|bosTau2\|chr7 (3006239-3006622)

	682-906, gnl\|bosTau2\|chr24 (14158944-14159173)
	682-906, gnl\|hg17\|chr18 (35296254-35296540)
	682-906, gnl\|panTro1\|chr17 (31480023-31480309)
	682-906, gnl\|rheMac2\|chr18 (32410072-32410368)