Non-Coding RNA Search

Ss1.1-Pig4-TMW8029J22.5

Sequence:


               
               GGCGTGGTGAAGGCCTACACCACCCGCGTGGGCGTCGGCGCCTTCCCCACCGAGCAGATC
AACGAAATCGGAGACCTGCTGCAGAGCCGCGGCCACGAGTGGGGCGTGACCACGGGCAGG
AAGAGGCGCTGCGGCTGGTTAGACCTCATGATCCTGAGATACGCCCACATGATCAATGGA
TTCACCGCGCTGGCCTTGACGAAGCTGGACATCCTGGACACCCTGGATGAGGTTAAAGTC
GGCGTCTCGTACAAGCTGAGCGGGAAGCGGATCCCCTACTTCCCAGCCAACCAGGAGATT
CTGCAGAAGGTGGAGGTGGAGTACGAAACGCTCCCGGGCTGGAAAACGGACACCACGGGC
GCCAGGAAGTGGGAGGACCTCCCCCCGCAGGCCCAGAGCTACATCCGGTTCGTGGAGAAC
CACGTGGGAGTGGCAGTGAAATGGGTTGGCGTCGGCAAATCCAGAGATTCGATGATCCAG
CTGTTTTAGACAGAGACGGAGCTGAGCCCAGCAGGCCACAGCGGGTCCCTGTGCACACAA
ACAGCCACAATCGTGTTCCCTCCTCGGCCGTAAACAAAGAGAAATGAAAACTATTTTCTG
TATTTTTATATTTCTCTTTAAGCCTTCAGCTTAACGCACTGATTTCTACAGTGACTTTAA
AGCCAGCATTGTGTCCATTTCAAAAAACCCTGCTGAGTCAAAGGAGCCGCGGGGCTCAAA
ACAGAGACTTCCTGGCACGTGAATCGTCACGCGGTTGTCTGTCCAGTTGGAGCTGTTTGA
TAATAAACGAATCCAACAGCCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGTGGTGAAGGCCTACACCACCCGCGTGGGCGTCGGCGCCTTCCCCACCGAGCAGATC
AACGAAATCGGAGACCTGCTGCAGAGCCGCGGCCACGAGTGGGGCGTGACCACGGGCAGG
AAGAGGCGCTGCGGCTGGTTAGACCTCATGATCCTGAGATACGCCCACATGATCAATGGA
TTCACCGCGCTGGCCTTGACGAAGCTGGACATCCTGGACACCCTGGATGAGGTTAAAGTC
GGCGTCTCGTACAAGCTGAGCGGGAAGCGGATCCCCTACTTCCCAGCCAACCAGGAGATT
CTGCAGAAGGTGGAGGTGGAGTACGAAACGCTCCCGGGCTGGAAAACGGACACCACGGGC
GCCAGGAAGTGGGAGGACCTCCCCCCGCAGGCCCAGAGCTACATCCGGTTCGTGGAGAAC
CACGTGGGAGTGGCAGTGAAATGGGTTGGCGTCGGCAAATCCAGAGATTCGATGATCCAG
CTGTTTTAGACAGAGACGGAGCTGAGCCCAGCAGGCCACAGCGGGTCCCTGTGCACACAA
ACAGCCACAATCGTGTTCCCTCCTCGGCCGTAAACAAAGAGAAATGAAAACTATTTTCTG
TATTTTTATATTTCTCTTTAAGCCTTCAGCTTAACGCACTGATTTCTACAGTGACTTTAA
AGCCAGCATTGTGTCCATTTCAAAAAACCCTGCTGAGTCAAAGGAGCCGCGGGGCTCAAA
ACAGAGACTTCCTGGCACGTGAATCGTCACGCGGTTGTCTGTCCAGTTGGAGCTGTTTGA
TAATAAACGAATCCAACAGCCGCT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               273-436, gnl|bosTau2|chr21 (48971045-48970883)
               

               
               273-436, gnl|Hg17|chr14 (104283598-104283767)
               

               
               273-436, gnl|Mm7|chr12 (110164544-110164706)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               273-436, gnl|bosTau2|chr21 (48971045-48970883)
               

               
               273-436, gnl|Hg17|chr14 (104283598-104283767)
               

               
               273-436, gnl|Mm7|chr12 (110164544-110164706)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.427716)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ton (0.1755)
               

               
               ssp (0.13552)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.427716)
               

               
               sme (0.305437)
               

               
               ldo (0.291008)
               

               
               ton (0.1755)
               

               
               ssp (0.13552)

	273-436, gnl\|bosTau2\|chr21 (48971045-48970883)
	273-436, gnl\|Hg17\|chr14 (104283598-104283767)
	273-436, gnl\|Mm7\|chr12 (110164544-110164706)

	nms (0.427716)
	sme (0.305437)
	ldo (0.291008)
	ton (0.1755)
	ssp (0.13552)