Non-Coding RNA Search

Ss1.1-Pig4-TMW8029K01.3.5

Sequence:


               
               AGACGCGGCTGTCGCACTCTCCATTCTCGGTCCTTGCTCCCGTCTGGCCTGAGGGAGTGC
GGGCCGGGGGCGGCCCCCAAGCGTTGGAGGTGCAGGGAAAGCAGGTCTGCGGGTTTAGGT
GTCGCGGCGGTGCACTCGTGGTGACAATCGGGAGGAGCAGGAGACAGCAAGGATAGGCCC
AGGAGCAATGGCGTCCAAAGAGGAGCAGCAAGCAGTGAAAAATCTCAGCATGGAAAATGC
CACCAAGGAGAATGAAAAAAAAGAAGAAAAGGGGCAAGATGCTAATAAAGGAGAGCCTTT
GGCCCTCCCTGTGGAAGCTGGTGATAATTGCGTACCTAGAGGAAATCGTAGGCGGTTCCG
TGTGAGGCAGCCTATCCTGCAGTATAGATGGGATATGACGCAGAGGCTTGGAGAGCCACA
GGCAAGGATGAGAGAAGAGAATATGGAAAGGATTGGGGAGGAGGTGAGGCTGCTGATGGA
AAAGCTGAGGGAAAAGCAGTTGAGTCATAGTCTTCGGGCAGTTAGCACTGACCCCCCTCA
CCATGACCATCACGATGAGTTTTGCCTTATGCCTTAAATCCTGATGTTTTCGCTGAAGTT
AATGGGGAGACACATCTGCTTCCTCTTAAATATTCATGATGTACCTTTGTTGTAAGCCTT
TTGATGTCTGTCATTTCTGGTGGACCTCATACTATCAACTTCTAGTTGAATGTGTTTTTG
ACCCAGTCTGTAAGATTTTGTTAGCAGAATTTTACCTATTGCATGGCAAGATGCTTATTA
TATATTGTGAAGTTAATAAAGCAGAAAGCAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGACGCGGCTGTCGCACTCTCCATTCTCGGTCCTTGCTCCCGTCTGGCCTGAGGGAGTGC
GGGCCGGGGGCGGCCCCCAAGCGTTGGAGGTGCAGGGAAAGCAGGTCTGCGGGTTTAGGT
GTCGCGGCGGTGCACTCGTGGTGACAATCGGGAGGAGCAGGAGACAGCAAGGATAGGCCC
AGGAGCAATGGCGTCCAAAGAGGAGCAGCAAGCAGTGAAAAATCTCAGCATGGAAAATGC
CACCAAGGAGAATGAAAAAAAAGAAGAAAAGGGGCAAGATGCTAATAAAGGAGAGCCTTT
GGCCCTCCCTGTGGAAGCTGGTGATAATTGCGTACCTAGAGGAAATCGTAGGCGGTTCCG
TGTGAGGCAGCCTATCCTGCAGTATAGATGGGATATGACGCAGAGGCTTGGAGAGCCACA
GGCAAGGATGAGAGAAGAGAATATGGAAAGGATTGGGGAGGAGGTGAGGCTGCTGATGGA
AAAGCTGAGGGAAAAGCAGTTGAGTCATAGTCTTCGGGCAGTTAGCACTGACCCCCCTCA
CCATGACCATCACGATGAGTTTTGCCTTATGCCTTAAATCCTGATGTTTTCGCTGAAGTT
AATGGGGAGACACATCTGCTTCCTCTTAAATATTCATGATGTACCTTTGTTGTAAGCCTT
TTGATGTCTGTCATTTCTGGTGGACCTCATACTATCAACTTCTAGTTGAATGTGTTTTTG
ACCCAGTCTGTAAGATTTTGTTAGCAGAATTTTACCTATTGCATGGCAAGATGCTTATTA
TATATTGTGAAGTTAATAAAGCAGAAAGCAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|57208154|emb|CAI42418.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57208154|emb|CAI42418.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               272-391, - strand, RNAz p=0.836629

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               272-391, - strand, RNAz p=0.836629

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-843, gnl|bosTau2|chr26 (19794182-19793344)
               

               
               1-843, gnl|Hg17|chrX (102372040-102370419)
               


               
               151-804, gnl|bosTau2|chr1 (78699460-78700122)
               

               
               151-804, gnl|Hg17|chrX (102371059-102370431)
               

               
               151-804, gnl|Mm7|chrX (130786424-130785790)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-843, gnl|bosTau2|chr26 (19794182-19793344)
               

               
               1-843, gnl|Hg17|chrX (102372040-102370419)
               


               
               151-804, gnl|bosTau2|chr1 (78699460-78700122)
               

               
               151-804, gnl|Hg17|chrX (102371059-102370431)
               

               
               151-804, gnl|Mm7|chrX (130786424-130785790)

Expressed library(ies): 36 entry(ies)

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Expressed library(ies): 36 entry(ies)

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               pgl (2.36967)
               

               
               fcc (1.18671)
               

               
               fco (1.10046)
               

               
               ebs (1.06471)
               

               
               cki (0.991408)
               

               
               fhi (0.847889)
               

               
               fce (0.814775)
               

               
               elu (0.770713)
               

               
               cbe (0.717703)
               

               
               ece (0.687916)
               

               
               ecc (0.575175)
               

               
               spc (0.566829)
               

               
               pro (0.512033)
               

               
               fbs (0.350693)
               

               
               lun (0.300978)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

Expressed library(ies): 36 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (2.36967)
               

               
               fcc (1.18671)
               

               
               fco (1.10046)
               

               
               ebs (1.06471)
               

               
               cki (0.991408)
               

               
               fhi (0.847889)
               

               
               fce (0.814775)
               

               
               elu (0.770713)
               

               
               cbe (0.717703)
               

               
               ece (0.687916)
               

               
               ecc (0.575175)
               

               
               spc (0.566829)
               

               
               pro (0.512033)
               

               
               fbs (0.350693)
               

               
               lun (0.300978)
               

               
               hyp (0.285673)
               

               
               nmm (0.265604)
               

               
               ret (0.257467)
               

               
               sug (0.254582)
               

               
               bla (0.248694)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               tes (0.207814)
               

               
               fli (0.202881)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               nco (0.161734)
               

               
               eli (0.151814)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               ldo (0.0970026)

	1-843, gnl\|bosTau2\|chr26 (19794182-19793344)
	1-843, gnl\|Hg17\|chrX (102372040-102370419)

	151-804, gnl\|bosTau2\|chr1 (78699460-78700122)
	151-804, gnl\|Hg17\|chrX (102371059-102370431)
	151-804, gnl\|Mm7\|chrX (130786424-130785790)

	pgl (2.36967)
	fcc (1.18671)
	fco (1.10046)
	ebs (1.06471)
	cki (0.991408)
	fhi (0.847889)
	fce (0.814775)
	elu (0.770713)
	cbe (0.717703)
	ece (0.687916)
	ecc (0.575175)
	spc (0.566829)
	pro (0.512033)
	fbs (0.350693)
	lun (0.300978)
	hyp (0.285673)
	nmm (0.265604)
	ret (0.257467)
	sug (0.254582)
	bla (0.248694)
	tra (0.246184)
	mgp (0.230681)
	tes (0.207814)
	fli (0.202881)
	fty (0.17584)
	mcp (0.170648)
	cut (0.169924)
	nco (0.161734)
	eli (0.151814)
	ski (0.146735)
	liv (0.146284)
	cst (0.140036)
	kid (0.129735)
	ova (0.129132)
	ese (0.126502)
	ldo (0.0970026)