Non-Coding RNA Search

Ss1.1-Pig4-TMW8029K02.5

Sequence:


               
               AAAAGAGACAGCACAGCCTGGAATGAGGACTCTGGTGGAGAAAAAGCTGAGGAAGCCCAG
GATCCTGCAGCTTTGATCATGGAGGATGAGCAGCCTGAAGGGTTCACATTCTCCTTTTTT
GATTCAGATGCTAAAGATGTAAAGGAAGAGACCTATAGAGTTGAGACAGTGAAACCTGGG
AAGATTTCCTGGCAGGGAGACCCTCGTTTCCAGGACAGCAGTTCAGAAGAAGAAGATGTT
ACTGAAGAAACAGATGACAAAAAGCCCAACCCTGAAGAAGTATCGTTACCTGAGAAAGAA
ACCACTAGATTTTTCTTTTTCTCTAAGAATGATGAGAGACTCCATGGTTCTGACTTATTC
TGGAGAGGAGTGGGAAATAATATTAGCAGGAATGCTTGGGAGGCCAGAATAAACAACCTG
CGTATGGACTGTCGGAAGAAACATAAAGATGCCAAAAGAAGACTGAAACCAAAATAATAA
AGGTCTTTATTAGTTTTGATACTGAATATAAACAAGTCTTACTTGTGGAAATTGGAGTGA
TCCGGAAAATAATTTAAGAAGAATTAAGAGTGAAGAAATATTCAAAATTCTATCTGGTGG
ATATCATTCTTGTTGCTTTCTTTTTCTCTGGATTTTTTTTCCTGACTAATTACTTATAAG
AGTTAACCTGAACTTTTTTTTAATGAAGCAAAAAAAGAGTCCCTCAAAATGCTTTTTGTA
TATAATCTCTTTGTACTTCATTTTTAATAACTAAAAATGATTTGTGTGAATTATACCTGA
AATATTAATGGTTGTATAAAATATACCTTACCCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAGAGACAGCACAGCCTGGAATGAGGACTCTGGTGGAGAAAAAGCTGAGGAAGCCCAG
GATCCTGCAGCTTTGATCATGGAGGATGAGCAGCCTGAAGGGTTCACATTCTCCTTTTTT
GATTCAGATGCTAAAGATGTAAAGGAAGAGACCTATAGAGTTGAGACAGTGAAACCTGGG
AAGATTTCCTGGCAGGGAGACCCTCGTTTCCAGGACAGCAGTTCAGAAGAAGAAGATGTT
ACTGAAGAAACAGATGACAAAAAGCCCAACCCTGAAGAAGTATCGTTACCTGAGAAAGAA
ACCACTAGATTTTTCTTTTTCTCTAAGAATGATGAGAGACTCCATGGTTCTGACTTATTC
TGGAGAGGAGTGGGAAATAATATTAGCAGGAATGCTTGGGAGGCCAGAATAAACAACCTG
CGTATGGACTGTCGGAAGAAACATAAAGATGCCAAAAGAAGACTGAAACCAAAATAATAA
AGGTCTTTATTAGTTTTGATACTGAATATAAACAAGTCTTACTTGTGGAAATTGGAGTGA
TCCGGAAAATAATTTAAGAAGAATTAAGAGTGAAGAAATATTCAAAATTCTATCTGGTGG
ATATCATTCTTGTTGCTTTCTTTTTCTCTGGATTTTTTTTCCTGACTAATTACTTATAAG
AGTTAACCTGAACTTTTTTTTAATGAAGCAAAAAAAGAGTCCCTCAAAATGCTTTTTGTA
TATAATCTCTTTGTACTTCATTTTTAATAACTAAAAATGATTTGTGTGAATTATACCTGA
AATATTAATGGTTGTATAAAATATACCTTACCCTCA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61888086|ref|XP_607177.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61888086|ref|XP_607177.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               147-282, gnl|bosTau2|chr8 (46683414-46683549)
               

               
               147-282, gnl|Hg17|chr9 (92141855-92141720)
               

               
               147-282, gnl|Mm7|chr13 (49159261-49159395)
               


               
               426-696, gnl|bosTau2|chr8 (46685652-46685929)
               

               
               426-696, gnl|Hg17|chr9 (92139724-92139465)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-282, gnl|bosTau2|chr8 (46683414-46683549)
               

               
               147-282, gnl|Hg17|chr9 (92141855-92141720)
               

               
               147-282, gnl|Mm7|chr13 (49159261-49159395)
               


               
               426-696, gnl|bosTau2|chr8 (46685652-46685929)
               

               
               426-696, gnl|Hg17|chr9 (92139724-92139465)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cje (0.330469)
               

               
               sme (0.305437)
               

               
               fce (0.271592)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               sme (0.305437)
               

               
               fce (0.271592)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               gul (0.177588)
               

               
               isp (0.150376)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               cty (0.10408)

	147-282, gnl\|bosTau2\|chr8 (46683414-46683549)
	147-282, gnl\|Hg17\|chr9 (92141855-92141720)
	147-282, gnl\|Mm7\|chr13 (49159261-49159395)

	426-696, gnl\|bosTau2\|chr8 (46685652-46685929)
	426-696, gnl\|Hg17\|chr9 (92139724-92139465)

	cje (0.330469)
	sme (0.305437)
	fce (0.271592)
	pan (0.23596)
	spc (0.226732)
	aor (0.195274)
	gul (0.177588)
	isp (0.150376)
	lyg (0.133103)
	thg (0.126791)
	tra (0.123092)
	cty (0.10408)