Ss1.1-Pig4-TMW8029K04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCTTGCTGCTGGGGAAACATGTCGAGTTTCTCCAAGGCGCCCCAGCAATGGGCCACGTTT GCTCGAGTTTGGTATCTCCTAGATGGGAAAATGCAGCCCCCTGGCAAACTTGCTGCCATG GCCTCAGTTAAACTTCAAGGATTGCATAAACCTGTGTATCATCAACTGAGTGACTGTGGA GATCATGTTGTCATAATGAACACAAGGCACATTGCATTTTCTGGAAACAAATGGGAACAA AAAGTATACTCCTCACATACTGGCTACCCAGGTGGATTCAGACAAGTAACAGCTGCTCAG CTTCACCAGAAGGATCCAGTGGCGATTGTAAAACTAGCTATTTATGGCATGTTGCCAAAA AACCTTCACAGAAGAACTATGATGCAGAGGTTGCATCTTTTCCCAGATGAAGATATACCA GAAGATATCCTTAAGAATTTAGTTGAAGAGCTTCCTCAACCACGAAAAGTGCCCCGACGT CTGGATGAGTACACACAAGAAGAAATAGAAGCTTTCCCAAGAGTTTGGTCTCCGCCTGAA GATTATCGGCTGTAGGAGAAAGAAAATTTCAGAGAAAGTGCGATAATTGAAATTTCTTCC TGATGAGTTGCTCCAACCTGCAGGGCAGAACGAAACAGCTGCTGCCTTTTGACAAGAAGC CTGTTATGGGTGCTGCAGGTTTGTGGGGAAGGGTCAGGAAAAGAGATTCCTTCAATAGGA AATTGCAATAAAATACATTATTTTATAGAATCGTTTTACTGTGTAATCTGATTTGAATGT TAAAAATGGTGGTAAGAATAAAACTGCTTACTCAGTTACAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCTTGCTGCTGGGGAAACATGTCGAGTTTCTCCAAGGCGCCCCAGCAATGGGCCACGTTT GCTCGAGTTTGGTATCTCCTAGATGGGAAAATGCAGCCCCCTGGCAAACTTGCTGCCATG GCCTCAGTTAAACTTCAAGGATTGCATAAACCTGTGTATCATCAACTGAGTGACTGTGGA GATCATGTTGTCATAATGAACACAAGGCACATTGCATTTTCTGGAAACAAATGGGAACAA AAAGTATACTCCTCACATACTGGCTACCCAGGTGGATTCAGACAAGTAACAGCTGCTCAG CTTCACCAGAAGGATCCAGTGGCGATTGTAAAACTAGCTATTTATGGCATGTTGCCAAAA AACCTTCACAGAAGAACTATGATGCAGAGGTTGCATCTTTTCCCAGATGAAGATATACCA GAAGATATCCTTAAGAATTTAGTTGAAGAGCTTCCTCAACCACGAAAAGTGCCCCGACGT CTGGATGAGTACACACAAGAAGAAATAGAAGCTTTCCCAAGAGTTTGGTCTCCGCCTGAA GATTATCGGCTGTAGGAGAAAGAAAATTTCAGAGAAAGTGCGATAATTGAAATTTCTTCC TGATGAGTTGCTCCAACCTGCAGGGCAGAACGAAACAGCTGCTGCCTTTTGACAAGAAGC CTGTTATGGGTGCTGCAGGTTTGTGGGGAAGGGTCAGGAAAAGAGATTCCTTCAATAGGA AATTGCAATAAAATACATTATTTTATAGAATCGTTTTACTGTGTAATCTGATTTGAATGT TAAAAATGGTGGTAAGAATAAAACTGCTTACTCAGTTACAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 44-173, gnl|bosTau2|chr14 (50547929-50547800) | |
| 44-173, gnl|canFam2|chr13 (22344435-22344595) | |
| 44-173, gnl|danRer3|chr15 (23881162-23880971) | |
| 44-173, gnl|dasNov1|scaffold_170921 (308-151) | |
| 44-173, gnl|echTel1|scaffold_235086 (3110-3271) | |
| 44-173, gnl|fr1|chrUn (43646006-43645845) | |
| 44-173, gnl|galGal2|chr2 (146854494-146854323) | |
| 44-173, gnl|hg17|chr8 (121524600-121524771) | |
| 44-173, gnl|Hg17|chr8 (121524731-121524602) | |
| 44-173, gnl|loxAfr1|scaffold_38668 (7744-7907) | |
| 44-173, gnl|mm7|chr15 (55618553-55618703) | |
| 44-173, gnl|Mm7|chr15 (55618683-55618555) | |
| 44-173, gnl|monDom2|scaffold_3 (35225473-35225326) | |
| 44-173, gnl|oryCun1|scaffold_89539 (6687-6531) | |
| 44-173, gnl|panTro1|chr7 (124173635-124173811) | |
| 44-173, gnl|rheMac2|chr8 (122965980-122966147) | |
| 44-173, gnl|rn3|chr7 (92101221-92101375) | |
| 44-173, gnl|tetNig1|chr8 (5303902-5303753) | |
| 412-534, gnl|bosTau2|chr14 (50525393-50525271) | |
| 412-534, gnl|Hg17|chr8 (121495532-121495410) | |
| 412-534, gnl|Mm7|chr15 (55602390-55602268) | |
| 535-807, gnl|bosTau2|chr14 (50511992-50511740) | |
| 535-807, gnl|Hg17|chr8 (121477544-121477280) | |
| 535-807, gnl|Mm7|chr15 (55597575-55597349) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-173, gnl|bosTau2|chr14 (50547929-50547800) | |
| 44-173, gnl|canFam2|chr13 (22344435-22344595) | |
| 44-173, gnl|danRer3|chr15 (23881162-23880971) | |
| 44-173, gnl|dasNov1|scaffold_170921 (308-151) | |
| 44-173, gnl|echTel1|scaffold_235086 (3110-3271) | |
| 44-173, gnl|fr1|chrUn (43646006-43645845) | |
| 44-173, gnl|galGal2|chr2 (146854494-146854323) | |
| 44-173, gnl|hg17|chr8 (121524600-121524771) | |
| 44-173, gnl|Hg17|chr8 (121524731-121524602) | |
| 44-173, gnl|loxAfr1|scaffold_38668 (7744-7907) | |
| 44-173, gnl|mm7|chr15 (55618553-55618703) | |
| 44-173, gnl|Mm7|chr15 (55618683-55618555) | |
| 44-173, gnl|monDom2|scaffold_3 (35225473-35225326) | |
| 44-173, gnl|oryCun1|scaffold_89539 (6687-6531) | |
| 44-173, gnl|panTro1|chr7 (124173635-124173811) | |
| 44-173, gnl|rheMac2|chr8 (122965980-122966147) | |
| 44-173, gnl|rn3|chr7 (92101221-92101375) | |
| 44-173, gnl|tetNig1|chr8 (5303902-5303753) | |
| 412-534, gnl|bosTau2|chr14 (50525393-50525271) | |
| 412-534, gnl|Hg17|chr8 (121495532-121495410) | |
| 412-534, gnl|Mm7|chr15 (55602390-55602268) | |
| 535-807, gnl|bosTau2|chr14 (50511992-50511740) | |
| 535-807, gnl|Hg17|chr8 (121477544-121477280) | |
| 535-807, gnl|Mm7|chr15 (55597575-55597349) |
| Expressed library(ies): 36 entry(ies) | More info |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
| clu (0.478583) | |
| ski (0.440205) | |
| ldo (0.38801) | |
| sin (0.349895) | |
| lun (0.300978) | |
| cte (0.29274) | |
| ssp (0.271039) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| sug (0.254582) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| aor (0.195274) | |
| col (0.195008) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| nco (0.161734) | |
| fco (0.157208) | |
| isp (0.150376) | |
| lin (0.145603) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |
| Expressed library(ies): 36 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| clu (0.478583) | |
| ski (0.440205) | |
| ldo (0.38801) | |
| sin (0.349895) | |
| lun (0.300978) | |
| cte (0.29274) | |
| ssp (0.271039) | |
| lyg (0.266205) | |
| ova (0.258264) | |
| sug (0.254582) | |
| cbe (0.239234) | |
| tes (0.207814) | |
| aor (0.195274) | |
| col (0.195008) | |
| cmu (0.186393) | |
| sto (0.179824) | |
| gul (0.177588) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| rec (0.17307) | |
| nco (0.161734) | |
| fco (0.157208) | |
| isp (0.150376) | |
| lin (0.145603) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ste (0.135208) | |
| ret (0.128733) | |
| bla (0.124347) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| med (0.116252) | |
| jca (0.11396) | |
| eje (0.0988338) |