Non-Coding RNA Search

Ss1.1-Pig4-TMW8029K09.3

Sequence:


               
               GGCGTGGACTTCGCGCTCAAAGTGCTCCACTGGGACCCGGAGACCGTGGTTCGCCTGCAG
CTCTGGGACATTGCAGGTCAAGAAAGATTTGGAAACATGACAAGGGTCTATTACCGAGAA
GCCATGGGTGCATTTATTGTCTTCGATGTCACCAGGCCAGCTACATTTGAAGCAGTGACA
AAGTGGAAGAATGATTGGGACTCAAAGTTAAGTCTCCCTAATGGCAAACCAGTATCGGTG
GTTTTGTTGGCCAACAAATGTGACCAGGGGAAGGATGTGCTCATGAACAATGGCCTCAAG
ATGGACCAGTTCTGCAAGGAGCATGGGTTTGTAGGATGGTTTGAAACATCAGCAAAGGAA
AATATAAACATTGATGAAGCCTCCAGATGCCTGGTGAAACATATACTTGCAAACGAATGT
GACCTGATGGAGTCCATTGAGCCTGACATTGTGAAGCCCCATCTCACATCGCCCAGGGCT
GTCAGCTGCTCCAGCTGTGCCAAATCCTAGTAGCTCCTGGACTGGCATCTGATGGAAGTC
ATCTAATCATCTCATGAATTGTGTCTCAATTCCTACCATTTTGGGTCAGTGTCAGGATAG
AGATACACCTGGGGCCAGCTAAAGCTCTATGCCTGTATCTTTCCTATAAGAGAAACAGCA
AATGTTCTTTTTATGTTTTTCTCAGCATCAGCCCAGTGTTTACAAGCTTTTAAAATATTT
AGTCTGTTACAAAATTTCTGTCTTGTAGCTGGCCATAATTCTGCAGGGCCAGAGTCAGCC
CTGTTATTTGCTTCTCTGAATCAGCTAAGGCCTCAGGTCTGAAAGAGAAAGAGAAGAACA
GACTAGCTGTCAAGTTAAGCGCCTTGGCTTTCACTTTGCCCCTGGTGTCTTTGTCCAGAT
TTCAATACATCCTCTGCTGGTCTGACAGGCCTATTAAGTAGAAATGGTATTTTCTCCAGA
GATGACCTCCATTCTCAACAGACCTAGAGTTGTGTCTGATTTAGCTCTTCAGAGTCATGT
ACACAGGCTGCCTATGCCTTTGTTGCTTTTATTGTCACTTGCCTTGCCCTGAATGTTGGT
TCAACTGAAAACTTTATGAAAAGACTGCCCCTGGTATGTGCCTTTCTGTTCGCTTTCTCT
GACTCAAGCTGTGGGACTCTTCTGTACATGTAATATATATTATATATATTTTCACAAGTG
AAAAATAAACCATTAAAAGATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGTGGACTTCGCGCTCAAAGTGCTCCACTGGGACCCGGAGACCGTGGTTCGCCTGCAG
CTCTGGGACATTGCAGGTCAAGAAAGATTTGGAAACATGACAAGGGTCTATTACCGAGAA
GCCATGGGTGCATTTATTGTCTTCGATGTCACCAGGCCAGCTACATTTGAAGCAGTGACA
AAGTGGAAGAATGATTGGGACTCAAAGTTAAGTCTCCCTAATGGCAAACCAGTATCGGTG
GTTTTGTTGGCCAACAAATGTGACCAGGGGAAGGATGTGCTCATGAACAATGGCCTCAAG
ATGGACCAGTTCTGCAAGGAGCATGGGTTTGTAGGATGGTTTGAAACATCAGCAAAGGAA
AATATAAACATTGATGAAGCCTCCAGATGCCTGGTGAAACATATACTTGCAAACGAATGT
GACCTGATGGAGTCCATTGAGCCTGACATTGTGAAGCCCCATCTCACATCGCCCAGGGCT
GTCAGCTGCTCCAGCTGTGCCAAATCCTAGTAGCTCCTGGACTGGCATCTGATGGAAGTC
ATCTAATCATCTCATGAATTGTGTCTCAATTCCTACCATTTTGGGTCAGTGTCAGGATAG
AGATACACCTGGGGCCAGCTAAAGCTCTATGCCTGTATCTTTCCTATAAGAGAAACAGCA
AATGTTCTTTTTATGTTTTTCTCAGCATCAGCCCAGTGTTTACAAGCTTTTAAAATATTT
AGTCTGTTACAAAATTTCTGTCTTGTAGCTGGCCATAATTCTGCAGGGCCAGAGTCAGCC
CTGTTATTTGCTTCTCTGAATCAGCTAAGGCCTCAGGTCTGAAAGAGAAAGAGAAGAACA
GACTAGCTGTCAAGTTAAGCGCCTTGGCTTTCACTTTGCCCCTGGTGTCTTTGTCCAGAT
TTCAATACATCCTCTGCTGGTCTGACAGGCCTATTAAGTAGAAATGGTATTTTCTCCAGA
GATGACCTCCATTCTCAACAGACCTAGAGTTGTGTCTGATTTAGCTCTTCAGAGTCATGT
ACACAGGCTGCCTATGCCTTTGTTGCTTTTATTGTCACTTGCCTTGCCCTGAATGTTGGT
TCAACTGAAAACTTTATGAAAAGACTGCCCCTGGTATGTGCCTTTCTGTTCGCTTTCTCT
GACTCAAGCTGTGGGACTCTTCTGTACATGTAATATATATTATATATATTTTCACAAGTG
AAAAATAAACCATTAAAAGATGCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61876340|ref|XP_612709.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61876340|ref|XP_612709.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               356-1223, gnl|bosTau2|chr17 (27603105-27603998)
               

               
               356-1223, gnl|Hg17|chr11 (87486958-87486077)
               

               
               356-1223, gnl|Mm7|chr7 (84427670-84428519)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               356-1223, gnl|bosTau2|chr17 (27603105-27603998)
               

               
               356-1223, gnl|Hg17|chr11 (87486958-87486077)
               

               
               356-1223, gnl|Mm7|chr7 (84427670-84428519)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	356-1223, gnl\|bosTau2\|chr17 (27603105-27603998)
	356-1223, gnl\|Hg17\|chr11 (87486958-87486077)
	356-1223, gnl\|Mm7\|chr7 (84427670-84428519)