Non-Coding RNA Search

Ss1.1-Pig4-TMW8029K10.5

Sequence:


               
               GTGGTTATCCAAATTCAGAGACGTGAGCAGTCTGCAGAGACGTCCAGAGGGCAGGCAGGT
CTCCATGGACACAGGTTCCTGCGTGCTACTGAGTTGGGCTCTGGGGCGCTCTGTAGGCCG
GGTTCAAGGGCACCTGCGCCCGCAGCCCTTCCCAGCCACCGTCCCACCCCCAGGGAGGGC
CCGCGGCTCTGAGCTGTGGTGGGGAGCCGTGGGAGGGTCGAGCCCAGCAGTGGCCTTCTC
GTAGGTTTTCTGTATCTGCCATTCCCGCGATGACACTTCAGGTGCAGAGCCAGTTGCTGT
CCTTGTGACTCCGTCCTGGGCCGCGTTCCGTGTGTGGTTGTCCCTCACGTTCCTGACAGC
TCTCGAGGAGGTTCCCGAGCATCCTGTGCACCACTTTCTGCCTCAGCCTTTAAACGCCGA
CCCGCCCGACCTCTGGGGGAGGCGTTCTGTCTCCACCGCGCCCGGCAGCCTTCCCTGAGG
GCGCGGGGCCGTGGTTGACCCCGGCCTGGGGGACGGGCCGCCAGCCCCTCCCGCTGCTCC
TCGAAGATGCCCTTGGTTTTGTTCCGTGAGGTGGGCTTTCTGTTCCTGAGAGATGTATAT
ATTTTCTTACTGTACATAAGATGTTCCTTAAGTGCTGGCAGAAAGCGATGCGGCGGGGCC
GAGGGCCGCGCTTCAGAAAGTGTTAGTGGAGCTTCACGCAGTCAGACCCCAGTCCTGACC
GTTGTCGTTCAGCTTGACTAGCATCTCTTTGGGATAAGACGCTGCTGCAGTACGTTTTTA
AACAGGACTCCAGGCCAATCCAGAGTACTTGCAAATCTTCAGTTCTGAGGAGGTTTTTGT
GACCTGTTCGGGGACCACACGAGGTCTTGCTGGTTTGCTGTGTCCACTTCAGAGGCCGGG
CAGTTCTGAGTCCCTCTCTGGGGTCGCCACCCCTTCCGCGAGGGCAGGGAGCTGCCAGGC
CACCCGGGGCTGCGTTTCTCTGACGTTCTCGTTTAGGAAAACGAGAGACTGACCTTGAAA
TGCTGCCGCCTTGGGAAGCCAGCCCTTCCGCCTCCCTACGCCACTGATTTTCAGAATGTG
AGACTTCAGGTTGGGACCTTGGTGCAGCTGGCCCTTTAGAGTCAGAAGCTATGTCCCCAC
CAGTCCCTGAAATCCTATCTGGAAAAAAGGCTCACTTTAAAAAGGTACTTTTTAACTGCT
CAGTTTTTGACTATTTTAAATAGTTGCTGATAGGAAACTCCTGATAACACTTGCTACTTA
TCATGTTTTAATTGCTTGTACAGTTAACCTTTAATTTTATTTAGTAAAGTGTATCAAACT
AGGGCTTTTTGAATTGTACATATGTGGTTTTATTAAATAAAAGTCATGTAAAATTGTTAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGGTTATCCAAATTCAGAGACGTGAGCAGTCTGCAGAGACGTCCAGAGGGCAGGCAGGT
CTCCATGGACACAGGTTCCTGCGTGCTACTGAGTTGGGCTCTGGGGCGCTCTGTAGGCCG
GGTTCAAGGGCACCTGCGCCCGCAGCCCTTCCCAGCCACCGTCCCACCCCCAGGGAGGGC
CCGCGGCTCTGAGCTGTGGTGGGGAGCCGTGGGAGGGTCGAGCCCAGCAGTGGCCTTCTC
GTAGGTTTTCTGTATCTGCCATTCCCGCGATGACACTTCAGGTGCAGAGCCAGTTGCTGT
CCTTGTGACTCCGTCCTGGGCCGCGTTCCGTGTGTGGTTGTCCCTCACGTTCCTGACAGC
TCTCGAGGAGGTTCCCGAGCATCCTGTGCACCACTTTCTGCCTCAGCCTTTAAACGCCGA
CCCGCCCGACCTCTGGGGGAGGCGTTCTGTCTCCACCGCGCCCGGCAGCCTTCCCTGAGG
GCGCGGGGCCGTGGTTGACCCCGGCCTGGGGGACGGGCCGCCAGCCCCTCCCGCTGCTCC
TCGAAGATGCCCTTGGTTTTGTTCCGTGAGGTGGGCTTTCTGTTCCTGAGAGATGTATAT
ATTTTCTTACTGTACATAAGATGTTCCTTAAGTGCTGGCAGAAAGCGATGCGGCGGGGCC
GAGGGCCGCGCTTCAGAAAGTGTTAGTGGAGCTTCACGCAGTCAGACCCCAGTCCTGACC
GTTGTCGTTCAGCTTGACTAGCATCTCTTTGGGATAAGACGCTGCTGCAGTACGTTTTTA
AACAGGACTCCAGGCCAATCCAGAGTACTTGCAAATCTTCAGTTCTGAGGAGGTTTTTGT
GACCTGTTCGGGGACCACACGAGGTCTTGCTGGTTTGCTGTGTCCACTTCAGAGGCCGGG
CAGTTCTGAGTCCCTCTCTGGGGTCGCCACCCCTTCCGCGAGGGCAGGGAGCTGCCAGGC
CACCCGGGGCTGCGTTTCTCTGACGTTCTCGTTTAGGAAAACGAGAGACTGACCTTGAAA
TGCTGCCGCCTTGGGAAGCCAGCCCTTCCGCCTCCCTACGCCACTGATTTTCAGAATGTG
AGACTTCAGGTTGGGACCTTGGTGCAGCTGGCCCTTTAGAGTCAGAAGCTATGTCCCCAC
CAGTCCCTGAAATCCTATCTGGAAAAAAGGCTCACTTTAAAAAGGTACTTTTTAACTGCT
CAGTTTTTGACTATTTTAAATAGTTGCTGATAGGAAACTCCTGATAACACTTGCTACTTA
TCATGTTTTAATTGCTTGTACAGTTAACCTTTAATTTTATTTAGTAAAGTGTATCAAACT
AGGGCTTTTTGAATTGTACATATGTGGTTTTATTAAATAAAAGTCATGTAAAATTGTTAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               936-1048, - strand, RNAz p=0.999687

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               936-1048, - strand, RNAz p=0.999687

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK126065, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK126065, -

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               242-1378, gnl|bosTau2|chr6 (69117036-69118196)
               

               
               242-1378, gnl|Hg17|chr4 (7151655-7152912)
               

               
               242-1378, gnl|Mm7|chr5 (35554290-35553237)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               242-1378, gnl|bosTau2|chr6 (69117036-69118196)
               

               
               242-1378, gnl|Hg17|chr4 (7151655-7152912)
               

               
               242-1378, gnl|Mm7|chr5 (35554290-35553237)

Expressed library(ies): 16 entry(ies)

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Expressed library(ies): 16 entry(ies)

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               cut (0.679694)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               pgl (0.35545)
               

               
               fbs (0.350693)
               

               
               cga (0.279096)
               

               
               ova (0.258264)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cut (0.679694)
               

               
               elu (0.385356)
               

               
               ese (0.379507)
               

               
               pgl (0.35545)
               

               
               fbs (0.350693)
               

               
               cga (0.279096)
               

               
               ova (0.258264)
               

               
               sto (0.179824)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	242-1378, gnl\|bosTau2\|chr6 (69117036-69118196)
	242-1378, gnl\|Hg17\|chr4 (7151655-7152912)
	242-1378, gnl\|Mm7\|chr5 (35554290-35553237)

	cut (0.679694)
	elu (0.385356)
	ese (0.379507)
	pgl (0.35545)
	fbs (0.350693)
	cga (0.279096)
	ova (0.258264)
	sto (0.179824)
	duo (0.172801)
	fhi (0.169578)
	nco (0.161734)
	spl (0.143184)
	cst (0.140036)
	cly (0.120642)
	ebs (0.118301)
	med (0.116252)