Non-Coding RNA Search

Ss1.1-Pig4-TMW8029K16.3

Sequence:


               
               GTGACCTTGAACCTGGAATTTCTCACCTTGGCCCATGGATTACTACGCTTAACCCCTTCC
CCTCCTCACTGACTGGTTCAGCGTGCTCTGACTATGAAAATAAGGATGAAGGGAGACTAG
AGATATAGAGATAGAATCATAATTATAAAGCTGCCCCCCACACCCCCATGTAGAGTTTAC
CTTTAATGCGAAATCCCTACTTTTTATAATGCAAATCTAAGAAAATGGGCACCAGGATTT
TGTAGCTGTCCTTTTCTATGTGTATATTTTTATAGCTACAGATTGTCTGCACAGTATACT
TTTGCAAGTTCGGGTGGACAACCTTGAACTCTTTGCACCCTTCCTAAGAATTTTCTCCCA
CAGGAGACTCGTGTGGGCCCTTTGTGGCATCAGAGGAGTGGGGTGGGCACCCTGGGGAGC
TGCCCCTTCTCTCTCCGTAAATGATGATGGCTCAAGAAGGTGGATATGAAACGTCTTCCA
AAATAAGCAGATGAAAAGGCACAGGTGTGAGCTGAGGTGGGTCACTGTCGTTTGGGTTTT
AAGAGTGCAGGTCTGCAGTAACTTGAATAAAGGAGACGAGGAAGGCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGACCTTGAACCTGGAATTTCTCACCTTGGCCCATGGATTACTACGCTTAACCCCTTCC
CCTCCTCACTGACTGGTTCAGCGTGCTCTGACTATGAAAATAAGGATGAAGGGAGACTAG
AGATATAGAGATAGAATCATAATTATAAAGCTGCCCCCCACACCCCCATGTAGAGTTTAC
CTTTAATGCGAAATCCCTACTTTTTATAATGCAAATCTAAGAAAATGGGCACCAGGATTT
TGTAGCTGTCCTTTTCTATGTGTATATTTTTATAGCTACAGATTGTCTGCACAGTATACT
TTTGCAAGTTCGGGTGGACAACCTTGAACTCTTTGCACCCTTCCTAAGAATTTTCTCCCA
CAGGAGACTCGTGTGGGCCCTTTGTGGCATCAGAGGAGTGGGGTGGGCACCCTGGGGAGC
TGCCCCTTCTCTCTCCGTAAATGATGATGGCTCAAGAAGGTGGATATGAAACGTCTTCCA
AAATAAGCAGATGAAAAGGCACAGGTGTGAGCTGAGGTGGGTCACTGTCGTTTGGGTTTT
AAGAGTGCAGGTCTGCAGTAACTTGAATAAAGGAGACGAGGAAGGCTC

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-579, gnl|bosTau2|chr20 (22494442-22495014)
               

               
               4-579, gnl|Hg17|chr5 (38500286-38500867)
               

               
               4-579, gnl|Mm7|chr15 (7033981-7033392)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-579, gnl|bosTau2|chr20 (22494442-22495014)
               

               
               4-579, gnl|Hg17|chr5 (38500286-38500867)
               

               
               4-579, gnl|Mm7|chr15 (7033981-7033392)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               sin (0.174948)
               

               
               lun (0.150489)
               

               
               nmm (0.132802)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sin (0.174948)
               

               
               lun (0.150489)
               

               
               nmm (0.132802)

	4-579, gnl\|bosTau2\|chr20 (22494442-22495014)
	4-579, gnl\|Hg17\|chr5 (38500286-38500867)
	4-579, gnl\|Mm7\|chr15 (7033981-7033392)