Non-Coding RNA Search

Ss1.1-Pig4-TMW8029K24.5.5

Sequence:


               
               CGGCGCTGGCTGCCAGCTCTGCCTTCACTGCCAGGAGCACTGGGGACCCAGCCCTGCCCC
CTGAGGAGGCTGCAAGTCTCCTCCACCTCCCAGGGCGAGTTCTAGCCACACTCCCTCCCT
CTCCGCAGTCCAGATCTCCAGGATCAGCCCCTTCAATACAGGTTTCTGTGGCTCAGGTGT
GAGTGAAACCAGCTAGTTTGTCAGCAGTGAAGCTCTAGACAGTCCGCTGGAGGAAGGACC
CTCCAGCTTGCATCTCATTTCTCCATCTTCCCCACACACACACTTGTAGTCCTGCCCAAG
CAGGCCTGCCGGGCACATGCCCCATCTGGCACAGGCCCGCATTCTTGTCACGCCACCCTG
GGCCTTAGGCTGCCTGGGAGGGGGAGATGCTCACGTTTGTGCAGACTGCGTAGACTGGTT
GGCGAAGGTAGCATTGGGTTCTAGGAGTCTTGGTATCTCATTGCCTGTCCCCCTGAGGGG
TGGGCAGAGGGTCTGGGGTCCCTGCTTTCTGCAGAAGCAAATGACTAAGTAGGCAGGATG
GAGGGGGGCCTCCACCCAGGCTCTTACGTAGGGCTTGTGGGCAGGCTGATGGTGTCCTTC
CGCCAGCACCTCCATCCTCACCCCTAGAGTCTGACCCAGAGAGTTCCAGGGTGTGAGCAG
AGAATAGGACCCTGGTTCACTTCTGCTAGTGGATCAGCCTCCGTGCCCCCAACCGGCCCT
CCCGTGAAGTGTTGGCAGGTGGTAGAGGAGCTGTGGCCACAGACTTTCACAGGGTGGGCC
TTGCGCAGTCCAGCTCATCTGCCCCTACCTTTACCTGCTGTCACCGGCCAGAACCCTGCT
CTCTCTTTAGAGCGCTGTGGGACCTCGGAGTGAGGGCAGGTGGAGAGGAGAGCCAGAATC
CAGCCGTTGTGGAGAATCTGGCCCCGGGGGTCTTCCGAGAGCATTCTCCAGGTGCTGCAT
GGGCCTGGCCTGTCCCCACTCCCACCATTTGCCTTCAGCCTCTGGTGACTCAATGGCCCT
TCTCCCTGGAGAAGACACCTCAGGGAGCCTGCTCTGTGACTGTCACTCCCATCCTACCAC
CTGCGACTGAGGGACACTCCTGCATTCTTACTCCACCCTGGGAGCCATCAAGAACTGTCC
CTCTCGGAGTTCCTGCTGTGGTGCAGTGCGATCAGCGGTGTCTCTGGAGCGCTGGGATAC
AGGTTCGATCCCTGGCCCAGTGCAGTGGGTTAAGGATCCAGCAGCACTGCTGTAGCATAG
GTAGCAACTGTGCCTCGGATCTGATCCCTGGCCGGGGAACTCCATATGCCATCAGGGGCG
GGGGTGGGGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGCTGGCTGCCAGCTCTGCCTTCACTGCCAGGAGCACTGGGGACCCAGCCCTGCCCC
CTGAGGAGGCTGCAAGTCTCCTCCACCTCCCAGGGCGAGTTCTAGCCACACTCCCTCCCT
CTCCGCAGTCCAGATCTCCAGGATCAGCCCCTTCAATACAGGTTTCTGTGGCTCAGGTGT
GAGTGAAACCAGCTAGTTTGTCAGCAGTGAAGCTCTAGACAGTCCGCTGGAGGAAGGACC
CTCCAGCTTGCATCTCATTTCTCCATCTTCCCCACACACACACTTGTAGTCCTGCCCAAG
CAGGCCTGCCGGGCACATGCCCCATCTGGCACAGGCCCGCATTCTTGTCACGCCACCCTG
GGCCTTAGGCTGCCTGGGAGGGGGAGATGCTCACGTTTGTGCAGACTGCGTAGACTGGTT
GGCGAAGGTAGCATTGGGTTCTAGGAGTCTTGGTATCTCATTGCCTGTCCCCCTGAGGGG
TGGGCAGAGGGTCTGGGGTCCCTGCTTTCTGCAGAAGCAAATGACTAAGTAGGCAGGATG
GAGGGGGGCCTCCACCCAGGCTCTTACGTAGGGCTTGTGGGCAGGCTGATGGTGTCCTTC
CGCCAGCACCTCCATCCTCACCCCTAGAGTCTGACCCAGAGAGTTCCAGGGTGTGAGCAG
AGAATAGGACCCTGGTTCACTTCTGCTAGTGGATCAGCCTCCGTGCCCCCAACCGGCCCT
CCCGTGAAGTGTTGGCAGGTGGTAGAGGAGCTGTGGCCACAGACTTTCACAGGGTGGGCC
TTGCGCAGTCCAGCTCATCTGCCCCTACCTTTACCTGCTGTCACCGGCCAGAACCCTGCT
CTCTCTTTAGAGCGCTGTGGGACCTCGGAGTGAGGGCAGGTGGAGAGGAGAGCCAGAATC
CAGCCGTTGTGGAGAATCTGGCCCCGGGGGTCTTCCGAGAGCATTCTCCAGGTGCTGCAT
GGGCCTGGCCTGTCCCCACTCCCACCATTTGCCTTCAGCCTCTGGTGACTCAATGGCCCT
TCTCCCTGGAGAAGACACCTCAGGGAGCCTGCTCTGTGACTGTCACTCCCATCCTACCAC
CTGCGACTGAGGGACACTCCTGCATTCTTACTCCACCCTGGGAGCCATCAAGAACTGTCC
CTCTCGGAGTTCCTGCTGTGGTGCAGTGCGATCAGCGGTGTCTCTGGAGCGCTGGGATAC
AGGTTCGATCCCTGGCCCAGTGCAGTGGGTTAAGGATCCAGCAGCACTGCTGTAGCATAG
GTAGCAACTGTGCCTCGGATCTGATCCCTGGCCGGGGAACTCCATATGCCATCAGGGGCG
GGGGTGGGGGGG

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               1-150, - strand, RNAz p=0.998046
               

               
               258-368, - strand, RNAz p=0.974292
               

               
               409-567, - strand, RNAz p=0.948284
               

               
               864-983, + strand, RNAz p=0.99242

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-150, - strand, RNAz p=0.998046
               

               
               258-368, - strand, RNAz p=0.974292
               

               
               409-567, - strand, RNAz p=0.948284
               

               
               864-983, + strand, RNAz p=0.99242

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               461-543, + strand, RNAmicro p=0.944176

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               461-543, + strand, RNAmicro p=0.944176

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_016532, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_016532, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1144, gnl|bosTau2|chr19 (17164740-17163595)
               

               
               1-1144, gnl|Hg17|chr17 (1345835-1344695)
               

               
               1-1144, gnl|Mm7|chr11 (75729321-75730365)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1144, gnl|bosTau2|chr19 (17164740-17163595)
               

               
               1-1144, gnl|Hg17|chr17 (1345835-1344695)
               

               
               1-1144, gnl|Mm7|chr11 (75729321-75730365)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               nco (0.161734)

	1-150, - strand, RNAz p=0.998046
	258-368, - strand, RNAz p=0.974292
	409-567, - strand, RNAz p=0.948284
	864-983, + strand, RNAz p=0.99242

	1-1144, gnl\|bosTau2\|chr19 (17164740-17163595)
	1-1144, gnl\|Hg17\|chr17 (1345835-1344695)
	1-1144, gnl\|Mm7\|chr11 (75729321-75730365)