Ss1.1-Pig4-TMW8029L03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTAAGATTATTTCCATCCAATATTTAAAGACTTGAATTTTATTTAAACTTGAAAATGAC TTTGCCTTAACTTTTGTATAAGACAGCTTAGAGTTCGTGAGCCCGGCCCCGGTTGTCGGG AGTGATTTCAGTTCCTCGGCTCCGTGGGGCCTGCTGTCGCTGGTGTCACTGAGCACGTGC ACGTGGTGCAGGAACGCGCAGTCGGGTTTGTAATATACCTGCAAGATCGCACCCAGCTGA TCCTTTTTCAGATTGTTGAAAAATTCTGTAAATGCCGATAGTCGATACTGTATTAAATGG GTGCCCTTGGGAGTGTGTGCTCTGCTTGTACAGTTGTAAATAGTCAGAACATATTAAAAA GGTACCCTAAAGAGAAGAGTCTGATAAAAATCGATATATTGTAAATGTTGCTATTGAGCG GGATGTAGATAAACTCAATGTTGTGGTTTGAGTATTATTTTAATTTGTTGGGGTTTTTTC CTTTTTTCTTGTACTGGTGTGTTCAACTGATTCTGCCTCTTTGCTGCTGCGAAAGGGAGA TGGAAAGTCATTAAAACCTTTGAATGTTTTCATGCTCTTAAAAGGATGTAAATATGTACT AATCACAGCTAATGTGAAAGGGTTTTCGAGGTATAATCTAGAAAGTGGAAGCTGGCGGGG TCCTCAAGTGAAAGTAAATAATAATCTCCTTAAAATCACAAATAGCTAAGCGTGATTTGC CTGCCGAGGTGAACGGGCCCATCTCCTTCAGAGCAGCATCTTTATTCAAATACCCAGACA CCCACACAGTGCTCATACTTGCAGATGCCCATACAAGGATCAGAGGGGTTTATTTCTTGG TGGTGGTGAGATTGCTGCCTAAAAAATCAGAAATAATGGACTGTTCCCACCCAAACGAAA GAGCACTGTACAGAGTTGGGAAGGCCAGCTCTGAGCCCTAGGAGTTCCCTGGGTGTGGCA GTCTTTGCCAGAGGAGGAGCGAATGTTGTCACCCATCGTCACCCCCAAGTCCCAAACCCC TTGCAGCCCAGACACTGGCTTTTCATGAGGACAGAGCCCTTCCCTGGAGGTGGGTGTGCA GAGCTGTGTGTGCGGACGGGATGGTTGTGGTCCCTGTGACAGCAGCACGTGGCGGGCCAG GCGTGCAAGGGTCACGGCTCCCCAGCCGCGCCCGTGGCAGCAGGGGTCGAGGTTTCACTC TTATGGGGTCTCTGTGGCATCCTTTCTAATTTGTAAGTAAGCGGAGTTGCCGATGCCGAG TAGCTGTGTGCCCTTCCCCCATGATGTCCCGTGCACAGGAGGTGCACGGAGAGCAGCGTG GCCCGCGCCCGCGCCTCGTGTGTGGCCTGCCTTCCCCCAGCCTCCCCTCGAGGTGCAGAG TCGGAGAGAGGGCAGTGACAGCGGCATTTTAACCTGTACAATCGTGTGATGATCCTTAGG GTTTGGAGATAAAGGATGAGAATCCAGCCTGTTTCAGCAGACATGAATTTCAAGCAGCGT AGTTGCTGTTCAGGAGTTGGCCTTGGGGTGACCGATCCGGCCTCCTGTAACCGCGTTGCC ACTCGACGCTGGCCGGGCAGGAAGCCTGACACGCCGCCGTGTGGGTCGGGTCTGGCCGCA CAGGTGGGGACTGGCTTGGGGCCTCAGGTCTGTATCGGCCACGGCCACCGCTGGGCTGTC CCAGGGCCTGGACCTCGCGGCCTGTCACCTGTGCCCGAGGCAGCAGACAATCAGCCCAGA GGAGAGCCTGCAGCCGCAGCCCCTTGGGGGGGCTTCTGTTTTTGTTCTTCTTTCATTAAG ACTGGAATCAAGCTTATGTGTAAACTTATTGGTAATTTAAGTTTCCTTTGTGTCATTCAG TGTAAAAATGTCTAATTTGAAAAAATGTAGGTTATGAAAAATAAAGATTTAGGCACTGTT AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTAAGATTATTTCCATCCAATATTTAAAGACTTGAATTTTATTTAAACTTGAAAATGAC TTTGCCTTAACTTTTGTATAAGACAGCTTAGAGTTCGTGAGCCCGGCCCCGGTTGTCGGG AGTGATTTCAGTTCCTCGGCTCCGTGGGGCCTGCTGTCGCTGGTGTCACTGAGCACGTGC ACGTGGTGCAGGAACGCGCAGTCGGGTTTGTAATATACCTGCAAGATCGCACCCAGCTGA TCCTTTTTCAGATTGTTGAAAAATTCTGTAAATGCCGATAGTCGATACTGTATTAAATGG GTGCCCTTGGGAGTGTGTGCTCTGCTTGTACAGTTGTAAATAGTCAGAACATATTAAAAA GGTACCCTAAAGAGAAGAGTCTGATAAAAATCGATATATTGTAAATGTTGCTATTGAGCG GGATGTAGATAAACTCAATGTTGTGGTTTGAGTATTATTTTAATTTGTTGGGGTTTTTTC CTTTTTTCTTGTACTGGTGTGTTCAACTGATTCTGCCTCTTTGCTGCTGCGAAAGGGAGA TGGAAAGTCATTAAAACCTTTGAATGTTTTCATGCTCTTAAAAGGATGTAAATATGTACT AATCACAGCTAATGTGAAAGGGTTTTCGAGGTATAATCTAGAAAGTGGAAGCTGGCGGGG TCCTCAAGTGAAAGTAAATAATAATCTCCTTAAAATCACAAATAGCTAAGCGTGATTTGC CTGCCGAGGTGAACGGGCCCATCTCCTTCAGAGCAGCATCTTTATTCAAATACCCAGACA CCCACACAGTGCTCATACTTGCAGATGCCCATACAAGGATCAGAGGGGTTTATTTCTTGG TGGTGGTGAGATTGCTGCCTAAAAAATCAGAAATAATGGACTGTTCCCACCCAAACGAAA GAGCACTGTACAGAGTTGGGAAGGCCAGCTCTGAGCCCTAGGAGTTCCCTGGGTGTGGCA GTCTTTGCCAGAGGAGGAGCGAATGTTGTCACCCATCGTCACCCCCAAGTCCCAAACCCC TTGCAGCCCAGACACTGGCTTTTCATGAGGACAGAGCCCTTCCCTGGAGGTGGGTGTGCA GAGCTGTGTGTGCGGACGGGATGGTTGTGGTCCCTGTGACAGCAGCACGTGGCGGGCCAG GCGTGCAAGGGTCACGGCTCCCCAGCCGCGCCCGTGGCAGCAGGGGTCGAGGTTTCACTC TTATGGGGTCTCTGTGGCATCCTTTCTAATTTGTAAGTAAGCGGAGTTGCCGATGCCGAG TAGCTGTGTGCCCTTCCCCCATGATGTCCCGTGCACAGGAGGTGCACGGAGAGCAGCGTG GCCCGCGCCCGCGCCTCGTGTGTGGCCTGCCTTCCCCCAGCCTCCCCTCGAGGTGCAGAG TCGGAGAGAGGGCAGTGACAGCGGCATTTTAACCTGTACAATCGTGTGATGATCCTTAGG GTTTGGAGATAAAGGATGAGAATCCAGCCTGTTTCAGCAGACATGAATTTCAAGCAGCGT AGTTGCTGTTCAGGAGTTGGCCTTGGGGTGACCGATCCGGCCTCCTGTAACCGCGTTGCC ACTCGACGCTGGCCGGGCAGGAAGCCTGACACGCCGCCGTGTGGGTCGGGTCTGGCCGCA CAGGTGGGGACTGGCTTGGGGCCTCAGGTCTGTATCGGCCACGGCCACCGCTGGGCTGTC CCAGGGCCTGGACCTCGCGGCCTGTCACCTGTGCCCGAGGCAGCAGACAATCAGCCCAGA GGAGAGCCTGCAGCCGCAGCCCCTTGGGGGGGCTTCTGTTTTTGTTCTTCTTTCATTAAG ACTGGAATCAAGCTTATGTGTAAACTTATTGGTAATTTAAGTTTCCTTTGTGTCATTCAG TGTAAAAATGTCTAATTTGAAAAAATGTAGGTTATGAAAAATAAAGATTTAGGCACTGTT AAAAAAAAAAAA |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 5-124, gnl|bosTau2|chr13 (31634442-31634561) | |
| 5-124, gnl|canFam2|chr2 (36969935-36969759) | |
| 5-124, gnl|dasNov1|scaffold_39557 (4614-4433) | |
| 5-124, gnl|echTel1|scaffold_321953 (10364-10546) | |
| 5-124, gnl|galGal2|chr2 (9676996-9677181) | |
| 5-124, gnl|hg17|chr10 (847424-847601) | |
| 5-124, gnl|Hg17|chr10 (847608-847487) | |
| 5-124, gnl|mm7|chr13 (9085232-9085056) | |
| 5-124, gnl|Mm7|chr13 (9085047-9085169) | |
| 5-124, gnl|monDom2|scaffold_7 (24086470-24086651) | |
| 5-124, gnl|oryCun1|scaffold_164229 (11777-11599) | |
| 5-124, gnl|panTro1|chr8 (904173-904350) | |
| 5-124, gnl|rheMac2|chr9 (989959-990136) | |
| 5-124, gnl|rn3|chr17 (71944377-71944551) | |
| 5-124, gnl|tetNig1|chrUn_random (106025799-106025977) | |
| 5-124, gnl|xenTro1|scaffold_378 (658161-657975) | |
| 144-1050, gnl|bosTau2|chr13 (31634559-31635446) | |
| 144-1050, gnl|Hg17|chr10 (847489-846545) | |
| 144-1050, gnl|Mm7|chr13 (9085167-9086134) | |
| 1767-1920, gnl|bosTau2|chr13 (31636115-31636266) | |
| 1767-1920, gnl|canFam2|chr2 (36971543-36971676) | |
| 1767-1920, gnl|dasNov1|scaffold_39557 (6516-6643) | |
| 1767-1920, gnl|echTel1|scaffold_321953 (8443-8320) | |
| 1767-1920, gnl|galGal2|chr2 (9675102-9674973) | |
| 1767-1920, gnl|Hg17|chr10 (845634-845485) | |
| 1767-1920, gnl|hg17|chr4 (169762870-169763007) | |
| 1767-1920, gnl|loxAfr1|scaffold_18084 (39591-39716) | |
| 1767-1920, gnl|mm7|chr13 (9087101-9087226) | |
| 1767-1920, gnl|Mm7|chr13 (9087079-9087233) | |
| 1767-1920, gnl|monDom2|scaffold_7 (24084513-24084390) | |
| 1767-1920, gnl|oryCun1|scaffold_68945 (7274-7375) | |
| 1767-1920, gnl|panTro1|chr3 (187368734-187368871) | |
| 1767-1920, gnl|rheMac2|chr5 (160596354-160596491) | |
| 1767-1920, gnl|rn3|chr17 (71942564-71942450) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-124, gnl|bosTau2|chr13 (31634442-31634561) | |
| 5-124, gnl|canFam2|chr2 (36969935-36969759) | |
| 5-124, gnl|dasNov1|scaffold_39557 (4614-4433) | |
| 5-124, gnl|echTel1|scaffold_321953 (10364-10546) | |
| 5-124, gnl|galGal2|chr2 (9676996-9677181) | |
| 5-124, gnl|hg17|chr10 (847424-847601) | |
| 5-124, gnl|Hg17|chr10 (847608-847487) | |
| 5-124, gnl|mm7|chr13 (9085232-9085056) | |
| 5-124, gnl|Mm7|chr13 (9085047-9085169) | |
| 5-124, gnl|monDom2|scaffold_7 (24086470-24086651) | |
| 5-124, gnl|oryCun1|scaffold_164229 (11777-11599) | |
| 5-124, gnl|panTro1|chr8 (904173-904350) | |
| 5-124, gnl|rheMac2|chr9 (989959-990136) | |
| 5-124, gnl|rn3|chr17 (71944377-71944551) | |
| 5-124, gnl|tetNig1|chrUn_random (106025799-106025977) | |
| 5-124, gnl|xenTro1|scaffold_378 (658161-657975) | |
| 144-1050, gnl|bosTau2|chr13 (31634559-31635446) | |
| 144-1050, gnl|Hg17|chr10 (847489-846545) | |
| 144-1050, gnl|Mm7|chr13 (9085167-9086134) | |
| 1767-1920, gnl|bosTau2|chr13 (31636115-31636266) | |
| 1767-1920, gnl|canFam2|chr2 (36971543-36971676) | |
| 1767-1920, gnl|dasNov1|scaffold_39557 (6516-6643) | |
| 1767-1920, gnl|echTel1|scaffold_321953 (8443-8320) | |
| 1767-1920, gnl|galGal2|chr2 (9675102-9674973) | |
| 1767-1920, gnl|Hg17|chr10 (845634-845485) | |
| 1767-1920, gnl|hg17|chr4 (169762870-169763007) | |
| 1767-1920, gnl|loxAfr1|scaffold_18084 (39591-39716) | |
| 1767-1920, gnl|mm7|chr13 (9087101-9087226) | |
| 1767-1920, gnl|Mm7|chr13 (9087079-9087233) | |
| 1767-1920, gnl|monDom2|scaffold_7 (24084513-24084390) | |
| 1767-1920, gnl|oryCun1|scaffold_68945 (7274-7375) | |
| 1767-1920, gnl|panTro1|chr3 (187368734-187368871) | |
| 1767-1920, gnl|rheMac2|chr5 (160596354-160596491) | |
| 1767-1920, gnl|rn3|chr17 (71942564-71942450) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| jca (0.45584) | |
| amn (0.417711) | |
| pla (0.401016) | |
| hyp (0.285673) | |
| ebs (0.236602) | |
| col (0.195008) | |
| ill (0.175593) | |
| cki (0.165235) | |
| ese (0.126502) | |
| med (0.116252) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.45584) | |
| amn (0.417711) | |
| pla (0.401016) | |
| hyp (0.285673) | |
| ebs (0.236602) | |
| col (0.195008) | |
| ill (0.175593) | |
| cki (0.165235) | |
| ese (0.126502) | |
| med (0.116252) |