Non-Coding RNA Search

Ss1.1-Pig4-TMW8029L08.3

Sequence:


               
               TTATGTTAAATTCTACAAGTGTCCTCTTTGCACCTATGAAACTCGTCGGAAGCGTGATGT
GATACGACATATAACTGTGGTTCATAAAAAGTCATCCCGTTATCTTGGGAAAATAACAGC
CAGTTTAGAGATCAGAGCTATAAAAAAGCCCATTGATTTTGTTCTAAATAAAGTGGCAAA
AAGAGGCCCTTCGAGGGACGAAGCAAAACATAGTGACGCAAAACATGATGGCACTTCTAA
CTCTCCTAGTAAAAAGTATGAAGTAGCTGACGTTGGTATTGAAGTTAAAGTCACAAAAAA
ACTTTTCTCTTCACAGATGCAATAAATGTGGAAAGGCATTTGCCAAAAAGACTTATCTCG
AACATCATAAGAAAACTCATAAGGCAAATGCTTCCAATTCACCTGAAGGAAACAAAACCA
AAGGCCGAAGTACAAGATCTAAGGCTCTTGTCTGGTGAGGAACAGTTACAGAGTTTTGCT
TTTTTCCCCCCATCGAACTAAAAAAAATCATTTGACCATAATTTGTAGCTGGTTCCATTT
TAACACATGTTTGCTTCCATATATCTTATGGCAGTGGGAACTGCAAGAGTAATGTGCATA
TTGCATTTACCTCTTCAGTGACCTTTATTCCAGTGGCTTGGGAACAAAAGTTAACTTCAG
AACTTATCTTCCACAGGACAATGCAATATAGTTATAGGTAGATGGCACAGGGTCAGTGCT
TTCCTCTCAATGTTGTAAAATATATACATTTATATTGGCTTATGTTTACAATAGAAGTCT
TCTGTTTAACTAACTTTGCACAGGTTTAATTTGATTCAGTGACTTAGTCTACTAATTAAT
ACATTGTAGGAAAGTTAAATATAATAGAATGAATTTGTGAAGGCGATAATTATAGGAAAA
AATCTTTTGAGGCACTGTAATTATTGTAAAAATTAATCTGTGATGGCTAAATAAAGTGCT
GCACTCAGAAAAAAAAAATCCCCAAATTGAATTTAGAATGATTAGCATTTATTATTTACA
TTTAACATAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTATGTTAAATTCTACAAGTGTCCTCTTTGCACCTATGAAACTCGTCGGAAGCGTGATGT
GATACGACATATAACTGTGGTTCATAAAAAGTCATCCCGTTATCTTGGGAAAATAACAGC
CAGTTTAGAGATCAGAGCTATAAAAAAGCCCATTGATTTTGTTCTAAATAAAGTGGCAAA
AAGAGGCCCTTCGAGGGACGAAGCAAAACATAGTGACGCAAAACATGATGGCACTTCTAA
CTCTCCTAGTAAAAAGTATGAAGTAGCTGACGTTGGTATTGAAGTTAAAGTCACAAAAAA
ACTTTTCTCTTCACAGATGCAATAAATGTGGAAAGGCATTTGCCAAAAAGACTTATCTCG
AACATCATAAGAAAACTCATAAGGCAAATGCTTCCAATTCACCTGAAGGAAACAAAACCA
AAGGCCGAAGTACAAGATCTAAGGCTCTTGTCTGGTGAGGAACAGTTACAGAGTTTTGCT
TTTTTCCCCCCATCGAACTAAAAAAAATCATTTGACCATAATTTGTAGCTGGTTCCATTT
TAACACATGTTTGCTTCCATATATCTTATGGCAGTGGGAACTGCAAGAGTAATGTGCATA
TTGCATTTACCTCTTCAGTGACCTTTATTCCAGTGGCTTGGGAACAAAAGTTAACTTCAG
AACTTATCTTCCACAGGACAATGCAATATAGTTATAGGTAGATGGCACAGGGTCAGTGCT
TTCCTCTCAATGTTGTAAAATATATACATTTATATTGGCTTATGTTTACAATAGAAGTCT
TCTGTTTAACTAACTTTGCACAGGTTTAATTTGATTCAGTGACTTAGTCTACTAATTAAT
ACATTGTAGGAAAGTTAAATATAATAGAATGAATTTGTGAAGGCGATAATTATAGGAAAA
AATCTTTTGAGGCACTGTAATTATTGTAAAAATTAATCTGTGATGGCTAAATAAAGTGCT
GCACTCAGAAAAAAAAAATCCCCAAATTGAATTTAGAATGATTAGCATTTATTATTTACA
TTTAACATAGTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55629298|ref|XP_519348.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55629298|ref|XP_519348.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               281-479, - strand, RNAz p=0.963923
               

               
               516-674, - strand, RNAz p=0.791882

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               281-479, - strand, RNAz p=0.963923
               

               
               516-674, - strand, RNAz p=0.791882

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1032, gnl|bosTau2|chr4 (48371342-48370310)
               

               
               1-1032, gnl|Hg17|chr7 (126607799-126606769)
               

               
               1-1032, gnl|Mm7|chr6 (28175575-28174545)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1032, gnl|bosTau2|chr4 (48371342-48370310)
               

               
               1-1032, gnl|Hg17|chr7 (126607799-126606769)
               

               
               1-1032, gnl|Mm7|chr6 (28175575-28174545)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mga (0.160205)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               spl (0.143184)

	281-479, - strand, RNAz p=0.963923
	516-674, - strand, RNAz p=0.791882

	1-1032, gnl\|bosTau2\|chr4 (48371342-48370310)
	1-1032, gnl\|Hg17\|chr7 (126607799-126606769)
	1-1032, gnl\|Mm7\|chr6 (28175575-28174545)