Ss1.1-Pig4-TMW8029L10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TATGGCACTTTGCCGAAATGCTAGAGAAATGGGTGTGTTTATGTACGTTTCTAATAGACA TGAATTTGGAAGACTGTTATCAACTGCTAATTATAATATCTCCCATTATCACAATGACCT CTGGCAGATATTTGAAAATCCTGTGGACTGGAAGGAAAAATATATAAACCGTGATTATTC AAAGATTTTCACTGAAAATATTGTCGAACAGCCCTGTCCAGATGTTTTTTGGTTTCCTAT ATTTTCTGAAAAAGCCTGTGATGAATTGGTGGAAGAAATGGAGCATTATGGCCAGTGGTC TGGGGGGAAGCATCATGATAGCCGTATATCTGGTGGTTATGAAAATGTCCCAACTGATGA TATCCACATGAAGCAAATTGATCTGGAAAATGTATGGCTTCATTTTATCCGGGAGTTTAT TGCACCCGTTACACTGAAGGTCTTCGCAGGCTATTACACGAAGGGGTTTGCGTTATTGAA TTTTGTAGTAAAATATTCCCCAGAAAGACAGCGCTCTCTTCGCCCTCATCATGACGCTTC TACATTTACCATCAACATTGCACTCAATAATGTGGGAGAAGATTTTCAGGGAGGTGGATG CAAATTTCTAAGGTACAATTGCTCTATTGAGTCACCAAGAAAAGGCTGGAGTTTCATGCA TCCTGGGAGACTCACACATTTGCATGAAGGACTTCCTGTTAAAAATGGAACGAGATACAT CGCTGTGTCCTTTATAGATCCCTAAGTTATTTACTTTGCAGTGAATTGAATTCTCTGGTG GAATGGATGACTGGCATGAATATGTCTTTGAAGTTGTGCTTGAGAAGATAAGCCGAATAT TTAAATAACTTTCACAGAACAACTTCACTTTTGGGCCAAACATTTGAAAAACTTTTTATA AAAAATTGTTTGATATTTCTTAGTGTCTGCTCTGAGCCTTAAAACACAGATTGAAGGAGA GTAAGGAAAAAAATGTAAAAGCAAATATTTATTTCTATGCCTTACTGTCTCTGAGAATAA TGACAATTTTCTGAATTTGTCTTTCAGTTGATAAAGTATTCAGGTACAGATGTACCCATG ACAAATGAGACTAATGATATTTTCTTAAAAGGATGGAAAGAATTTTATTTGTCAATATGT ATGGAAAATGGATATAAATGAAAATTTCAAAAATTTCCATTTTTTAAATGCTGAAAAACT GGAGTTATAACTGAATTTATATGCAACTAGTTGTGGGAGGGCTTTTTTGACCACCTAACC TTTTACAGTGGTTACTGAAGGACCAATATGATGCAGTGTTTTTCCTTAAGAAACTCAGTA CAAAATTCAACTGAAGCGCATATCCAGTGGAAAACATTTTTGTTTAGATTGTCAGAATTT TTTTTTAACATTTGCATTAGAAATCAAGTCTCATGTTCCTTCAGATGAATTTTTCAAGGT GGATTACATTAAGTAGATGTTAGATTTAGGAAAACTGTCAAGCCTTTCGATTTTGTAAAG TACAGAAAGTATTAACTTAAGATCAGCAAGTGTCCTTAAGTCAATATAGGTATTTTTGAA AATTCTAGAAAATAATAAGGAAAAAGAAAATTTCATTGATATTAGTAGTAACATTTTATG ATTAAAAAAAACTCTTTTAAGTACTTGAATATTATATCAGGAAAATAAAGTTGGTGAGCC TTTTCTTCTTCCCTTTTGCCCTTGTCTTCCTCCTTACTCTTTTTTTAGGGAGGGTGATTT ACTTTCTTGTCTTCCCAGCATAGTCTCCTTTTTATCCTTCTTACTCTTTTTATTACTTTC CCTTTATCCCACTTTTAAAAAATTCCCCAACACAAAAAAAATTTGTGACTTGATTTTTTT TTTTACCATTATTCTGAGTGAGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TATGGCACTTTGCCGAAATGCTAGAGAAATGGGTGTGTTTATGTACGTTTCTAATAGACA TGAATTTGGAAGACTGTTATCAACTGCTAATTATAATATCTCCCATTATCACAATGACCT CTGGCAGATATTTGAAAATCCTGTGGACTGGAAGGAAAAATATATAAACCGTGATTATTC AAAGATTTTCACTGAAAATATTGTCGAACAGCCCTGTCCAGATGTTTTTTGGTTTCCTAT ATTTTCTGAAAAAGCCTGTGATGAATTGGTGGAAGAAATGGAGCATTATGGCCAGTGGTC TGGGGGGAAGCATCATGATAGCCGTATATCTGGTGGTTATGAAAATGTCCCAACTGATGA TATCCACATGAAGCAAATTGATCTGGAAAATGTATGGCTTCATTTTATCCGGGAGTTTAT TGCACCCGTTACACTGAAGGTCTTCGCAGGCTATTACACGAAGGGGTTTGCGTTATTGAA TTTTGTAGTAAAATATTCCCCAGAAAGACAGCGCTCTCTTCGCCCTCATCATGACGCTTC TACATTTACCATCAACATTGCACTCAATAATGTGGGAGAAGATTTTCAGGGAGGTGGATG CAAATTTCTAAGGTACAATTGCTCTATTGAGTCACCAAGAAAAGGCTGGAGTTTCATGCA TCCTGGGAGACTCACACATTTGCATGAAGGACTTCCTGTTAAAAATGGAACGAGATACAT CGCTGTGTCCTTTATAGATCCCTAAGTTATTTACTTTGCAGTGAATTGAATTCTCTGGTG GAATGGATGACTGGCATGAATATGTCTTTGAAGTTGTGCTTGAGAAGATAAGCCGAATAT TTAAATAACTTTCACAGAACAACTTCACTTTTGGGCCAAACATTTGAAAAACTTTTTATA AAAAATTGTTTGATATTTCTTAGTGTCTGCTCTGAGCCTTAAAACACAGATTGAAGGAGA GTAAGGAAAAAAATGTAAAAGCAAATATTTATTTCTATGCCTTACTGTCTCTGAGAATAA TGACAATTTTCTGAATTTGTCTTTCAGTTGATAAAGTATTCAGGTACAGATGTACCCATG ACAAATGAGACTAATGATATTTTCTTAAAAGGATGGAAAGAATTTTATTTGTCAATATGT ATGGAAAATGGATATAAATGAAAATTTCAAAAATTTCCATTTTTTAAATGCTGAAAAACT GGAGTTATAACTGAATTTATATGCAACTAGTTGTGGGAGGGCTTTTTTGACCACCTAACC TTTTACAGTGGTTACTGAAGGACCAATATGATGCAGTGTTTTTCCTTAAGAAACTCAGTA CAAAATTCAACTGAAGCGCATATCCAGTGGAAAACATTTTTGTTTAGATTGTCAGAATTT TTTTTTAACATTTGCATTAGAAATCAAGTCTCATGTTCCTTCAGATGAATTTTTCAAGGT GGATTACATTAAGTAGATGTTAGATTTAGGAAAACTGTCAAGCCTTTCGATTTTGTAAAG TACAGAAAGTATTAACTTAAGATCAGCAAGTGTCCTTAAGTCAATATAGGTATTTTTGAA AATTCTAGAAAATAATAAGGAAAAAGAAAATTTCATTGATATTAGTAGTAACATTTTATG ATTAAAAAAAACTCTTTTAAGTACTTGAATATTATATCAGGAAAATAAAGTTGGTGAGCC TTTTCTTCTTCCCTTTTGCCCTTGTCTTCCTCCTTACTCTTTTTTTAGGGAGGGTGATTT ACTTTCTTGTCTTCCCAGCATAGTCTCCTTTTTATCCTTCTTACTCTTTTTATTACTTTC CCTTTATCCCACTTTTAAAAAATTCCCCAACACAAAAAAAATTTGTGACTTGATTTTTTT TTTTACCATTATTCTGAGTGAGGT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 31-146, gnl|bosTau2|chr1 (78341017-78340902) | |
| 31-146, gnl|canFam2|chr23 (44347886-44348008) | |
| 31-146, gnl|danRer3|chrNA (123128798-123128676) | |
| 31-146, gnl|dasNov1|scaffold_65877 (7590-7476) | |
| 31-146, gnl|fr1|chrUn (245271402-245271281) | |
| 31-146, gnl|galGal2|chr9 (10905542-10905664) | |
| 31-146, gnl|hg17|chr3 (147277264-147277386) | |
| 31-146, gnl|Hg17|chr3 (147277381-147277266) | |
| 31-146, gnl|loxAfr1|scaffold_683 (107967-108089) | |
| 31-146, gnl|mm7|chr9 (92237165-92237043) | |
| 31-146, gnl|Mm7|chr9 (92237046-92237161) | |
| 31-146, gnl|monDom2|scaffold_28 (17415421-17415543) | |
| 31-146, gnl|oryCun1|scaffold_194281 (5177-5055) | |
| 31-146, gnl|panTro1|chr2 (150059213-150059335) | |
| 31-146, gnl|rheMac2|chr3 (48498810-48498932) | |
| 31-146, gnl|rn3|chr8 (97608804-97608682) | |
| 31-146, gnl|tetNig1|chr6 (3600165-3600042) | |
| 31-146, gnl|xenTro1|scaffold_533 (786464-786586) | |
| 314-464, gnl|bosTau2|chr1 (78335142-78334992) | |
| 314-464, gnl|canFam2|chr23 (44343445-44343606) | |
| 314-464, gnl|danRer3|chrNA (123132510-123132349) | |
| 314-464, gnl|dasNov1|scaffold_98633 (4108-4269) | |
| 314-464, gnl|echTel1|scaffold_280144 (14728-14567) | |
| 314-464, gnl|fr1|chrUn (245273783-245273615) | |
| 314-464, gnl|galGal2|chr9 (10902962-10903126) | |
| 314-464, gnl|hg17|chr3 (147271755-147271920) | |
| 314-464, gnl|Hg17|chr3 (147271911-147271761) | |
| 314-464, gnl|loxAfr1|scaffold_683 (102882-103043) | |
| 314-464, gnl|mm7|chr9 (92240758-92240597) | |
| 314-464, gnl|Mm7|chr9 (92240604-92240754) | |
| 314-464, gnl|monDom2|scaffold_28 (17408241-17408402) | |
| 314-464, gnl|oryCun1|scaffold_194281 (10814-10653) | |
| 314-464, gnl|panTro1|chr2 (150053689-150053850) | |
| 314-464, gnl|rheMac2|chr2 (141720990-141720829) | |
| 314-464, gnl|rn3|chr8 (97640878-97640717) | |
| 314-464, gnl|tetNig1|chrUn_random (83936631-83936794) | |
| 314-464, gnl|xenTro1|scaffold_533 (783223-783382) | |
| 584-1884, gnl|bosTau2|chr1 (78334588-78333301) | |
| 584-1884, gnl|Hg17|chr3 (147271363-147270059) | |
| 584-1884, gnl|Mm7|chr9 (92241167-92242395) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 31-146, gnl|bosTau2|chr1 (78341017-78340902) | |
| 31-146, gnl|canFam2|chr23 (44347886-44348008) | |
| 31-146, gnl|danRer3|chrNA (123128798-123128676) | |
| 31-146, gnl|dasNov1|scaffold_65877 (7590-7476) | |
| 31-146, gnl|fr1|chrUn (245271402-245271281) | |
| 31-146, gnl|galGal2|chr9 (10905542-10905664) | |
| 31-146, gnl|hg17|chr3 (147277264-147277386) | |
| 31-146, gnl|Hg17|chr3 (147277381-147277266) | |
| 31-146, gnl|loxAfr1|scaffold_683 (107967-108089) | |
| 31-146, gnl|mm7|chr9 (92237165-92237043) | |
| 31-146, gnl|Mm7|chr9 (92237046-92237161) | |
| 31-146, gnl|monDom2|scaffold_28 (17415421-17415543) | |
| 31-146, gnl|oryCun1|scaffold_194281 (5177-5055) | |
| 31-146, gnl|panTro1|chr2 (150059213-150059335) | |
| 31-146, gnl|rheMac2|chr3 (48498810-48498932) | |
| 31-146, gnl|rn3|chr8 (97608804-97608682) | |
| 31-146, gnl|tetNig1|chr6 (3600165-3600042) | |
| 31-146, gnl|xenTro1|scaffold_533 (786464-786586) | |
| 314-464, gnl|bosTau2|chr1 (78335142-78334992) | |
| 314-464, gnl|canFam2|chr23 (44343445-44343606) | |
| 314-464, gnl|danRer3|chrNA (123132510-123132349) | |
| 314-464, gnl|dasNov1|scaffold_98633 (4108-4269) | |
| 314-464, gnl|echTel1|scaffold_280144 (14728-14567) | |
| 314-464, gnl|fr1|chrUn (245273783-245273615) | |
| 314-464, gnl|galGal2|chr9 (10902962-10903126) | |
| 314-464, gnl|hg17|chr3 (147271755-147271920) | |
| 314-464, gnl|Hg17|chr3 (147271911-147271761) | |
| 314-464, gnl|loxAfr1|scaffold_683 (102882-103043) | |
| 314-464, gnl|mm7|chr9 (92240758-92240597) | |
| 314-464, gnl|Mm7|chr9 (92240604-92240754) | |
| 314-464, gnl|monDom2|scaffold_28 (17408241-17408402) | |
| 314-464, gnl|oryCun1|scaffold_194281 (10814-10653) | |
| 314-464, gnl|panTro1|chr2 (150053689-150053850) | |
| 314-464, gnl|rheMac2|chr2 (141720990-141720829) | |
| 314-464, gnl|rn3|chr8 (97640878-97640717) | |
| 314-464, gnl|tetNig1|chrUn_random (83936631-83936794) | |
| 314-464, gnl|xenTro1|scaffold_533 (783223-783382) | |
| 584-1884, gnl|bosTau2|chr1 (78334588-78333301) | |
| 584-1884, gnl|Hg17|chr3 (147271363-147270059) | |
| 584-1884, gnl|Mm7|chr9 (92241167-92242395) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| lin (0.436808) | |
| amn (0.417711) | |
| jej (0.395687) | |
| sme (0.305437) | |
| tra (0.246184) | |
| col (0.195008) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| spl (0.143184) | |
| ste (0.135208) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| ldo (0.0970026) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.436808) | |
| amn (0.417711) | |
| jej (0.395687) | |
| sme (0.305437) | |
| tra (0.246184) | |
| col (0.195008) | |
| nje (0.16592) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| spl (0.143184) | |
| ste (0.135208) | |
| ute (0.132784) | |
| ebs (0.118301) | |
| ldo (0.0970026) |