Non-Coding RNA Search

Ss1.1-Pig4-TMW8029L14.3

Sequence:


               
               CGGGAAAGCCAGCTAATGCATACTTGATTTTGGTAATCTCTAAAGACAATTGCAACAGTT
AGAGAAAGACTTCACCGAAAGCCGGAGCGACTTAGTTCGCTGCGGGAAGCTAGGATCCTT
GCTGGGTCTGAGCCGATACACAATGAGAGGGAAGAGCACGGCTGCGCCGGTGGAGACAAC
CGATTCATTCTTTGGAGGTTGGAGGGGGAAAGTTGATTAAAGTCTCCAGGGTCTCGGGCC
TCACTTTTAACATGCATCCCTTGAGGGGGTGCTGGAGCCCCTGGATTCTTCCCTCCCCCA
CTCCCAGTTCCAACCCATGGTCTTTTATCATGCGTCCTTCATTTTTAAGTAGGCACTGTT
TTGGAAAAAAGGCCTCTGGGCTCATTAGCAGTTGAAGGGGGAAAAATCTATTTACTACGT
GGGCTCGCAGACTTTTGACTAAAATCTAGCTAATATTTTTCGTAGTAGAAAACACTCTGG
AAGGAAGTCGTGTGTGAATTTTGATTTCTTTGAGATGACTTTGGGGAAATGGGAACCGCG
TTTGCTGAGGATGATTCTGAAACTGATCCTCTAGTGCGGTTGTGCTAATCGGGAGACCCC
TCGGGGTAGAGCTCCTACTTGTAATTAAGATGTCCATGAGCAGGAGTGCACCTTCCGGAT
GAAAAATACTAATGAGATGTAAACAGCTCGGGCACAGGGATGTTTGCTTCCTCGAAGCCA
AACATCTGGCCCTTTGACATGCACCTGGGTAAAAAGCAAAAAGGGACGGTGATGTCTACA
CCCTTGTAAACAGCCTTCTGATGTCCGGTTGATGGGCAAAGTGAGGTAGAGATAACCAGG
GTGATTCTAGCTAAGGCAGAGCTCCCAGCGTGAGGCCTTGATTTGGCTGAGTGTGAGAGA
AATTTGTTATCAGCAGTCACCCGAATTCTATCTTGTTTAACTGTCTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGAAAGCCAGCTAATGCATACTTGATTTTGGTAATCTCTAAAGACAATTGCAACAGTT
AGAGAAAGACTTCACCGAAAGCCGGAGCGACTTAGTTCGCTGCGGGAAGCTAGGATCCTT
GCTGGGTCTGAGCCGATACACAATGAGAGGGAAGAGCACGGCTGCGCCGGTGGAGACAAC
CGATTCATTCTTTGGAGGTTGGAGGGGGAAAGTTGATTAAAGTCTCCAGGGTCTCGGGCC
TCACTTTTAACATGCATCCCTTGAGGGGGTGCTGGAGCCCCTGGATTCTTCCCTCCCCCA
CTCCCAGTTCCAACCCATGGTCTTTTATCATGCGTCCTTCATTTTTAAGTAGGCACTGTT
TTGGAAAAAAGGCCTCTGGGCTCATTAGCAGTTGAAGGGGGAAAAATCTATTTACTACGT
GGGCTCGCAGACTTTTGACTAAAATCTAGCTAATATTTTTCGTAGTAGAAAACACTCTGG
AAGGAAGTCGTGTGTGAATTTTGATTTCTTTGAGATGACTTTGGGGAAATGGGAACCGCG
TTTGCTGAGGATGATTCTGAAACTGATCCTCTAGTGCGGTTGTGCTAATCGGGAGACCCC
TCGGGGTAGAGCTCCTACTTGTAATTAAGATGTCCATGAGCAGGAGTGCACCTTCCGGAT
GAAAAATACTAATGAGATGTAAACAGCTCGGGCACAGGGATGTTTGCTTCCTCGAAGCCA
AACATCTGGCCCTTTGACATGCACCTGGGTAAAAAGCAAAAAGGGACGGTGATGTCTACA
CCCTTGTAAACAGCCTTCTGATGTCCGGTTGATGGGCAAAGTGAGGTAGAGATAACCAGG
GTGATTCTAGCTAAGGCAGAGCTCCCAGCGTGAGGCCTTGATTTGGCTGAGTGTGAGAGA
AATTTGTTATCAGCAGTCACCCGAATTCTATCTTGTTTAACTGTCTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               199-337, - strand, RNAz p=0.899015

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-337, - strand, RNAz p=0.899015

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-881, gnl|bosTau2|chr3 (55332886-55333792)
               

               
               2-881, gnl|Hg17|chr1 (63952910-63953824)
               

               
               2-881, gnl|Mm7|chr4 (99473406-99474258)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-881, gnl|bosTau2|chr3 (55332886-55333792)
               

               
               2-881, gnl|Hg17|chr1 (63952910-63953824)
               

               
               2-881, gnl|Mm7|chr4 (99473406-99474258)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               che (0.136314)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)

	2-881, gnl\|bosTau2\|chr3 (55332886-55333792)
	2-881, gnl\|Hg17\|chr1 (63952910-63953824)
	2-881, gnl\|Mm7\|chr4 (99473406-99474258)