Non-Coding RNA Search

Ss1.1-Pig4-TMW8029L16.5

Sequence:


               
               ACCCTAACTGGTGCTGTGGCATCAGGCCTGTCCCTGGCGGGTACAGGTGCGTGGTGCCCC
CTGCAGGCTCTTGGGCATTGCCACTCCCTTTCACTGCTCGGGAGTGTCTCCAGGACGCCC
CCACCGGCTCCGGCTCTGTTTAGTATGAGGGCAGCCACCCAGGCCCCTGGGAAGCGCCAC
CAGCGGGCATGGCGATCAGCAAACATGAATACTCCTTCCTTTCCTTCCACCTGCTGGGGG
ATGGCTGAGTTTCTTAGACAAAATTGTAAGGGATCCTTGCCGCCCCCACCCCCAGCATCC
TCAAGGCAGAGAGCTTCTTGTTTGCCCTCAGAACAAGGTGCACACAAGCTTGGGGATACA
GGCAAGCGCCTGCTTTTCCTTAATAAGAACCATATGGTGGGTGTGTGTCGCCTAGAGGGG
TTAATCTTTGGGGGCTCCCTCTCCTCCACCCTCTGGTTCCCATTTCCTGTCCTAAGCAGG
ATGAGGGCCCAGGAGGCTGAGGCCCTGAGAAAAAGGGTGCCAGCGGGCTCCAGTGGAAGG
AGTTGGCCTAGGATGTTTCTGCCATTTTCCCCAATCAGAGCTCCCTCCCACCCCCTCCGC
AGGAAACCGGCAAAACTCCCTCCCGTGCCCCTCAGCCCCTAGTTCAAGCTGAGCGGATAC
AGCTGGGATGAGGGCCAGGCATGGACCTGGGTCAGCCAATGGCACCTGCTCCAGTTCTGA
CCATGCCAGCCTGCCCACGGGGAGGCTGGAGGCTGACCACTGACTTCTGACTTGTTACAC
TGTGGCTCCCTCAGGCCGTTTGACTGCTCCCTTTAACTTTCGAAAGAAGAAATGAAAACC
CACATCTGCCCAAGTGGCACTTTTGAACAGGTTTGGGCTGGGGTTCCTGGTGGATTTCTT
ATTCACCAGCACCCACGAAAACTAAGTTGCAAACCATACCTCGTGGGACCATCTGCTCAG
CCTCCTTCTTGGGTCAAAGCTACCGCCACCCGACCTGTCGGGGAGGGTTCCGATGGACCA
AAGTCCATCAGCTCCCAGTGGAAGCCCAGGGCCCTGAGGAGGGTTTGGGGAGCCAAAAAA
AAAAAAAAGGACTGTTCCATAGAACTGAGCTTCTGCTAAAAGTCTTTTCTGAAGCCTTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCCTAACTGGTGCTGTGGCATCAGGCCTGTCCCTGGCGGGTACAGGTGCGTGGTGCCCC
CTGCAGGCTCTTGGGCATTGCCACTCCCTTTCACTGCTCGGGAGTGTCTCCAGGACGCCC
CCACCGGCTCCGGCTCTGTTTAGTATGAGGGCAGCCACCCAGGCCCCTGGGAAGCGCCAC
CAGCGGGCATGGCGATCAGCAAACATGAATACTCCTTCCTTTCCTTCCACCTGCTGGGGG
ATGGCTGAGTTTCTTAGACAAAATTGTAAGGGATCCTTGCCGCCCCCACCCCCAGCATCC
TCAAGGCAGAGAGCTTCTTGTTTGCCCTCAGAACAAGGTGCACACAAGCTTGGGGATACA
GGCAAGCGCCTGCTTTTCCTTAATAAGAACCATATGGTGGGTGTGTGTCGCCTAGAGGGG
TTAATCTTTGGGGGCTCCCTCTCCTCCACCCTCTGGTTCCCATTTCCTGTCCTAAGCAGG
ATGAGGGCCCAGGAGGCTGAGGCCCTGAGAAAAAGGGTGCCAGCGGGCTCCAGTGGAAGG
AGTTGGCCTAGGATGTTTCTGCCATTTTCCCCAATCAGAGCTCCCTCCCACCCCCTCCGC
AGGAAACCGGCAAAACTCCCTCCCGTGCCCCTCAGCCCCTAGTTCAAGCTGAGCGGATAC
AGCTGGGATGAGGGCCAGGCATGGACCTGGGTCAGCCAATGGCACCTGCTCCAGTTCTGA
CCATGCCAGCCTGCCCACGGGGAGGCTGGAGGCTGACCACTGACTTCTGACTTGTTACAC
TGTGGCTCCCTCAGGCCGTTTGACTGCTCCCTTTAACTTTCGAAAGAAGAAATGAAAACC
CACATCTGCCCAAGTGGCACTTTTGAACAGGTTTGGGCTGGGGTTCCTGGTGGATTTCTT
ATTCACCAGCACCCACGAAAACTAAGTTGCAAACCATACCTCGTGGGACCATCTGCTCAG
CCTCCTTCTTGGGTCAAAGCTACCGCCACCCGACCTGTCGGGGAGGGTTCCGATGGACCA
AAGTCCATCAGCTCCCAGTGGAAGCCCAGGGCCCTGAGGAGGGTTTGGGGAGCCAAAAAA
AAAAAAAAGGACTGTTCCATAGAACTGAGCTTCTGCTAAAAGTCTTTTCTGAAGCCTTCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               249-365, - strand, RNAz p=0.854232
               

               
               403-638, - strand, RNAz p=0.929522

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               249-365, - strand, RNAz p=0.854232
               

               
               403-638, - strand, RNAz p=0.929522

Predicted microRNA(s): 3 entry(ies)

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Predicted microRNA(s): 3 entry(ies)

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               617-729, - strand, RNAmicro p=0.99967
               

               
               328-456, - strand, RNAmicro p=0.997581
               

               
               514-595, - strand, RNAmicro p=0.992025

Predicted microRNA(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               617-729, - strand, RNAmicro p=0.99967
               

               
               328-456, - strand, RNAmicro p=0.997581
               

               
               514-595, - strand, RNAmicro p=0.992025

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               112-806, gnl|bosTau2|chr3 (76786138-76786808)
               

               
               112-806, gnl|Hg17|chr1 (36231538-36230674)
               

               
               112-806, gnl|Mm7|chr4 (125757586-125758324)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               112-806, gnl|bosTau2|chr3 (76786138-76786808)
               

               
               112-806, gnl|Hg17|chr1 (36231538-36230674)
               

               
               112-806, gnl|Mm7|chr4 (125757586-125758324)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               eru (0.360144)
               

               
               cov (0.264306)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.360144)
               

               
               cov (0.264306)
               

               
               gul (0.177588)
               

               
               eye (0.170503)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)

	249-365, - strand, RNAz p=0.854232
	403-638, - strand, RNAz p=0.929522

	617-729, - strand, RNAmicro p=0.99967
	328-456, - strand, RNAmicro p=0.997581
	514-595, - strand, RNAmicro p=0.992025

	112-806, gnl\|bosTau2\|chr3 (76786138-76786808)
	112-806, gnl\|Hg17\|chr1 (36231538-36230674)
	112-806, gnl\|Mm7\|chr4 (125757586-125758324)

	eru (0.360144)
	cov (0.264306)
	gul (0.177588)
	eye (0.170503)
	pla (0.133672)
	ese (0.126502)
	eep (0.122564)