Non-Coding RNA Search

Ss1.1-Pig4-TMW8029M05.3

Sequence:


               
               GCGCGGGCTCCGCTGCCCGAGATCCGTGCTCTCTACGCCTTCACGGGACTGAGCCTCACA
CCGCAGCTCGAGGCCTGGATCCACAATATCACACATGGGGTCGGGCCCGGCGCGCGCCGC
GAGGCGTTCAAGACCACGTCCAGGAACGCGCTCAATGTCTCGCAGGCCTGGCGCCACGCG
CTGCCCTTCGCCAAGATCCGCCGCGTGCAAGAGCTGTGCTCCGGCGCGCTGCAGCTGCTG
GGCTACCGGCCCGTGTTCTCCGAGGAAGAGCAGCGCGACCTCTCCCTGGACCTGGTGCTG
CCGCTAGGCCCAAGCAGCTTCAGCTGGGCATCATCCACCGCCAAGCACCCCGGGCCGTAG
CGGAGGTCCCCAGCTGTGGCTGGGGGTCGCCAGGACCGGGAGACTCAGGCATGGTGGGGT
GGGAGCCGTGGTACGCGGGGGCACAGGCTGCTACTGGAGGGGCCGGGAGTTTGGGAGTCC
TCTCCCACCCCTACCCCGTAGTAGGGGAACCGAGCCCCCAAACTATGTTTCTTTCTTGAT
TTTACTTTTTAGGAGCTGGGTTCCCATCAGACACACTCTTCATGGAAAGCAGCCTTGCGC
CCCCACTTCCTCTGGGCACAGGGAATAGGTTCAGATGACTTGGCTCCTCCTCCAGCACTT
TGTTTCCCCTTTATTCTCCCTTGGGATGCCTCACCCTGCCGCTGAGGTCGACCCAGCCCT
GCCTGGGCGTTCAGGGGGCACTGTGGTGAGCTCTGCCTGAAGTTGGTACATCACCCCCTC
CGGGCACCCTAGTCTCTGTCCCGCCCCGCCTTTGGCATCATGCGGCACCAAAGCCAAGGC
TTTTATATTCACCTGTATCTTCAGCAAGAAATCAGACAGGGTACCTCTGTCTTGTGATCT
CCCCTTAGCCTCTCTCTGCCCACATGTCTCCGAGCAGCCCACATGCCCTCATCACCTGCC
TAAGTAAGGTGACCCTTTGATTTGTCCTGACAGAAAAGATCCTCCCCGCAGAAATAAACA
TAACTAACCTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCGGGCTCCGCTGCCCGAGATCCGTGCTCTCTACGCCTTCACGGGACTGAGCCTCACA
CCGCAGCTCGAGGCCTGGATCCACAATATCACACATGGGGTCGGGCCCGGCGCGCGCCGC
GAGGCGTTCAAGACCACGTCCAGGAACGCGCTCAATGTCTCGCAGGCCTGGCGCCACGCG
CTGCCCTTCGCCAAGATCCGCCGCGTGCAAGAGCTGTGCTCCGGCGCGCTGCAGCTGCTG
GGCTACCGGCCCGTGTTCTCCGAGGAAGAGCAGCGCGACCTCTCCCTGGACCTGGTGCTG
CCGCTAGGCCCAAGCAGCTTCAGCTGGGCATCATCCACCGCCAAGCACCCCGGGCCGTAG
CGGAGGTCCCCAGCTGTGGCTGGGGGTCGCCAGGACCGGGAGACTCAGGCATGGTGGGGT
GGGAGCCGTGGTACGCGGGGGCACAGGCTGCTACTGGAGGGGCCGGGAGTTTGGGAGTCC
TCTCCCACCCCTACCCCGTAGTAGGGGAACCGAGCCCCCAAACTATGTTTCTTTCTTGAT
TTTACTTTTTAGGAGCTGGGTTCCCATCAGACACACTCTTCATGGAAAGCAGCCTTGCGC
CCCCACTTCCTCTGGGCACAGGGAATAGGTTCAGATGACTTGGCTCCTCCTCCAGCACTT
TGTTTCCCCTTTATTCTCCCTTGGGATGCCTCACCCTGCCGCTGAGGTCGACCCAGCCCT
GCCTGGGCGTTCAGGGGGCACTGTGGTGAGCTCTGCCTGAAGTTGGTACATCACCCCCTC
CGGGCACCCTAGTCTCTGTCCCGCCCCGCCTTTGGCATCATGCGGCACCAAAGCCAAGGC
TTTTATATTCACCTGTATCTTCAGCAAGAAATCAGACAGGGTACCTCTGTCTTGTGATCT
CCCCTTAGCCTCTCTCTGCCCACATGTCTCCGAGCAGCCCACATGCCCTCATCACCTGCC
TAAGTAAGGTGACCCTTTGATTTGTCCTGACAGAAAAGATCCTCCCCGCAGAAATAAACA
TAACTAACCTGT

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               1-446, gnl|bosTau2|chr18 (1737922-1738360)
               

               
               1-446, gnl|Hg17|chr16 (74070399-74069969)
               

               
               1-446, gnl|Mm7|chr8 (110490203-110489754)
               


               
               550-1032, gnl|bosTau2|chr18 (1738676-1739161)
               

               
               550-1032, gnl|Mm7|chr8 (110489662-110489188)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-446, gnl|bosTau2|chr18 (1737922-1738360)
               

               
               1-446, gnl|Hg17|chr16 (74070399-74069969)
               

               
               1-446, gnl|Mm7|chr8 (110490203-110489754)
               


               
               550-1032, gnl|bosTau2|chr18 (1738676-1739161)
               

               
               550-1032, gnl|Mm7|chr8 (110489662-110489188)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               eru (0.120048)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eru (0.120048)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	1-446, gnl\|bosTau2\|chr18 (1737922-1738360)
	1-446, gnl\|Hg17\|chr16 (74070399-74069969)
	1-446, gnl\|Mm7\|chr8 (110490203-110489754)

	550-1032, gnl\|bosTau2\|chr18 (1738676-1739161)
	550-1032, gnl\|Mm7\|chr8 (110489662-110489188)