Ss1.1-Pig4-TMW8029M13.5
|
GCGCCTCACGGCGCTCTATTTGCTCTGGGAGATGTACCGCACCGAACCGCTCGCCGCCAA
CCCCTTCGCCGCCAGCTTCGCGCATCTGCTCAACCCCGCGCCGCCCGCCGCGGCGGCCAG
GAACCCGACCGGCCGCCGCTCTCAGGCTTTTTACCTCCTATAACTCCACCAGAAAAGTTT
TTTCTTTCCCAGCTGATGCTGGCACCCCCAAGGGAACTCTTCAAAAAGACCCCTCGACAG
ATTGCCTTGATGGATGTCGGAAATATGGGCCAGTCCGTGGACATCAGCGGGCTTCAGCTG
GCCTTGGCCGAACGCCAGTCTGAGCTGCCAACTCAAAGTAAAGCCAGCTTCCCCAGCATT
CTCAGTGACCCAGACCCGGATTCTTCGAATTCTGGATTCGACAGCTCGGTTGCCTCTCAG
ATCACGGAAGCTTTAGTCAGTGGACCAAAGCCACCTATTGAAAGCCACTTCCGGCCGGAG
TTCATTCGCCCACCACCTCCCCTGCACATCTGCGAGGACGAGCTGGCCTGGCTGAACCCC
ACGGAGCCTGACCATACGATTCAGTGGGACAGGTCAATGTGTGTGAAGAACAGCACTGGT
GTGGAAATCAAACGAATAATGGCCAAAGCCTTCAAGAGCCCCTTATCTTCTCCTCAGCAA
ACACAGCTCCTGGGAGAGTTGGAAAAAGACCCCAAACTCGTTTATCATATTGGTCTCACT
CCAGCCAAACTTCCTGACCTAGTGGAAAACAACCCTCTAGTCGCTATAGAAATGTTGCTG
AAGCTAATGCAGTCAAGCCAGATCACGGAGTATTTTCTCCTGAATTTATTCACCTTTATA
TATCAAATTGCATTTCTACCTGTGAACAAATTAAGGATAAATATATGCAGGTAAGTAATA
GAAATTTCTGTAAATTTTATAAATGCCTGCCAAGAAAAAAAAGACTAAAACTTGTTTCTC
TTTCAGAATCGTTTGGTGCGTCTCGTGTGTGTTTTTCTCCAGTCCCTGATCCGTAACAAA
ATCATCAACGTGCAGGACTTGTTTATAGAGGTGCAGGCCTTCTGCATCGAGTTCAGCAGG
ATACGAGAAGCTGCCGGCCTCTTCCGCTTGCTGAAGACTTTGGACACTGGGGAGGCACCT
TCTGAGACCAAGATGTCAAAGTGATACCTCATCCAGCCCCCCTCCATTGCTGCACTGTAC
TGTGACCTGATTCTTCAAACCCTGAGTGGATTGCTTGGCTTAATGGCTACAAACCCCATT
TTACCTACTTAAGGCAACATTTTGCTTTCCTGGATGACCTTTTTTTTTTTTAGATGAATT
TTCGGTAAGAACTTGGAAAGAACATCCTCTAGGTGTCTGGCTCATGATTATCCACAGGGG
AGCGTCACCCCAGAGTTAATACTCAAAAGTAGATGAGGTCTCTTGCACTAAAGATGGAGC
AGGATGCCTGGTCTGGCTTAAAACTTAAGTCACAGGCTCCTGATAAAGCAAGAATCCCAT
TTTCCTGAGGTTCCAATGTTAAAGCTGGAGTGAGAGAGTAAATGAAGACATTGTGAAGGT
CTTACTGCCCATGAGGTTTTGAATCATCATGACAGTGCCTGACCCTTGAACTTCACATTA
GGCACAGTGACTGCAGACACAGGTGTAACTTTATCCTTCCTCGTTGTGGGGACCTAGGAG
ACAAGAGAAGAATTACATTTCTTGAGCTTCCTATAAACACGAGGACTCTTAGAAACCTTT
CTTGAGACTCTGATAGCTGGTTTAGTTTTCTGGGCTTTTGTTGTCTTTGAGACGTTCATT
CATTCTTCTGCTGTGCATCTAAGGCATCAGTGCTCTGGGAGGGAATGTGGTCACTGGGGA
GCTGTCAGGTACAGTTGCTCACCGAATGGGACCTGTGCCCCCCAACCATGACGTTGGGGG
GGCCATTACCCCTTGTTTAACTCTGGACAACAGTGCCTTACATTAAAGTTTTCTATGAAC
TCTAAAAAAAAAAACAGGTGTTTTGACAGTCATTAAAGGAAAGTGATTACTGCCATAAAT
AATACAACCTTAACTAAATCGCTCTGACTTGCTCATCTTTCTGCATTTACATTCCCCACA
TCGCCAGCATTTTATCAACTCTGTATTTCAGCAAAAGTTGTAGGAATATCTGACCCTTTA
GCATGTTTATTTCCATCTAAGAAAAGCCTATCATCAAAGGAAACTTCCTTTCAAAGTCCT
GAAGACTCTTCTTTTCTCTGACTTCATCTGTTAAAAGACTTGTGTTTCCAGAGCTAAGAC
TACTATAATTGCCTTCTATTTATAATTTAGGGTTCAAACTATTTTTTTTTTTTCTTTTGT
GGCTGTACTCATGGTATGTGGAAGCCCCTGGGCCAGGGATCAAACCCGAGCCTCAGCTGC
GACCTATGCCACAACCGTGGCAACCTGGATCCTTACTGAACCCATTGTGCCAGGTCAGGG |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GCGCCTCACGGCGCTCTATTTGCTCTGGGAGATGTACCGCACCGAACCGCTCGCCGCCAA
CCCCTTCGCCGCCAGCTTCGCGCATCTGCTCAACCCCGCGCCGCCCGCCGCGGCGGCCAG
GAACCCGACCGGCCGCCGCTCTCAGGCTTTTTACCTCCTATAACTCCACCAGAAAAGTTT
TTTCTTTCCCAGCTGATGCTGGCACCCCCAAGGGAACTCTTCAAAAAGACCCCTCGACAG
ATTGCCTTGATGGATGTCGGAAATATGGGCCAGTCCGTGGACATCAGCGGGCTTCAGCTG
GCCTTGGCCGAACGCCAGTCTGAGCTGCCAACTCAAAGTAAAGCCAGCTTCCCCAGCATT
CTCAGTGACCCAGACCCGGATTCTTCGAATTCTGGATTCGACAGCTCGGTTGCCTCTCAG
ATCACGGAAGCTTTAGTCAGTGGACCAAAGCCACCTATTGAAAGCCACTTCCGGCCGGAG
TTCATTCGCCCACCACCTCCCCTGCACATCTGCGAGGACGAGCTGGCCTGGCTGAACCCC
ACGGAGCCTGACCATACGATTCAGTGGGACAGGTCAATGTGTGTGAAGAACAGCACTGGT
GTGGAAATCAAACGAATAATGGCCAAAGCCTTCAAGAGCCCCTTATCTTCTCCTCAGCAA
ACACAGCTCCTGGGAGAGTTGGAAAAAGACCCCAAACTCGTTTATCATATTGGTCTCACT
CCAGCCAAACTTCCTGACCTAGTGGAAAACAACCCTCTAGTCGCTATAGAAATGTTGCTG
AAGCTAATGCAGTCAAGCCAGATCACGGAGTATTTTCTCCTGAATTTATTCACCTTTATA
TATCAAATTGCATTTCTACCTGTGAACAAATTAAGGATAAATATATGCAGGTAAGTAATA
GAAATTTCTGTAAATTTTATAAATGCCTGCCAAGAAAAAAAAGACTAAAACTTGTTTCTC
TTTCAGAATCGTTTGGTGCGTCTCGTGTGTGTTTTTCTCCAGTCCCTGATCCGTAACAAA
ATCATCAACGTGCAGGACTTGTTTATAGAGGTGCAGGCCTTCTGCATCGAGTTCAGCAGG
ATACGAGAAGCTGCCGGCCTCTTCCGCTTGCTGAAGACTTTGGACACTGGGGAGGCACCT
TCTGAGACCAAGATGTCAAAGTGATACCTCATCCAGCCCCCCTCCATTGCTGCACTGTAC
TGTGACCTGATTCTTCAAACCCTGAGTGGATTGCTTGGCTTAATGGCTACAAACCCCATT
TTACCTACTTAAGGCAACATTTTGCTTTCCTGGATGACCTTTTTTTTTTTTAGATGAATT
TTCGGTAAGAACTTGGAAAGAACATCCTCTAGGTGTCTGGCTCATGATTATCCACAGGGG
AGCGTCACCCCAGAGTTAATACTCAAAAGTAGATGAGGTCTCTTGCACTAAAGATGGAGC
AGGATGCCTGGTCTGGCTTAAAACTTAAGTCACAGGCTCCTGATAAAGCAAGAATCCCAT
TTTCCTGAGGTTCCAATGTTAAAGCTGGAGTGAGAGAGTAAATGAAGACATTGTGAAGGT
CTTACTGCCCATGAGGTTTTGAATCATCATGACAGTGCCTGACCCTTGAACTTCACATTA
GGCACAGTGACTGCAGACACAGGTGTAACTTTATCCTTCCTCGTTGTGGGGACCTAGGAG
ACAAGAGAAGAATTACATTTCTTGAGCTTCCTATAAACACGAGGACTCTTAGAAACCTTT
CTTGAGACTCTGATAGCTGGTTTAGTTTTCTGGGCTTTTGTTGTCTTTGAGACGTTCATT
CATTCTTCTGCTGTGCATCTAAGGCATCAGTGCTCTGGGAGGGAATGTGGTCACTGGGGA
GCTGTCAGGTACAGTTGCTCACCGAATGGGACCTGTGCCCCCCAACCATGACGTTGGGGG
GGCCATTACCCCTTGTTTAACTCTGGACAACAGTGCCTTACATTAAAGTTTTCTATGAAC
TCTAAAAAAAAAAACAGGTGTTTTGACAGTCATTAAAGGAAAGTGATTACTGCCATAAAT
AATACAACCTTAACTAAATCGCTCTGACTTGCTCATCTTTCTGCATTTACATTCCCCACA
TCGCCAGCATTTTATCAACTCTGTATTTCAGCAAAAGTTGTAGGAATATCTGACCCTTTA
GCATGTTTATTTCCATCTAAGAAAAGCCTATCATCAAAGGAAACTTCCTTTCAAAGTCCT
GAAGACTCTTCTTTTCTCTGACTTCATCTGTTAAAAGACTTGTGTTTCCAGAGCTAAGAC
TACTATAATTGCCTTCTATTTATAATTTAGGGTTCAAACTATTTTTTTTTTTTCTTTTGT
GGCTGTACTCATGGTATGTGGAAGCCCCTGGGCCAGGGATCAAACCCGAGCCTCAGCTGC
GACCTATGCCACAACCGTGGCAACCTGGATCCTTACTGAACCCATTGTGCCAGGTCAGGG |
|
gi|62822540|gb|AAY15088.1| |
Protein identifier
|
gi|62822540|gb|AAY15088.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1-146, gnl|bosTau2|chr19 (2758711-2758565) |
|
1-146, gnl|Hg17|chr2 (101328313-101328459) |
|
1-146, gnl|Mm7|chr1 (39777573-39777719) |
| |
|
825-935, gnl|bosTau2|chr22 (18875871-18875981) |
|
825-935, gnl|Hg17|chr2 (101344051-101344157) |
|
825-935, gnl|Mm7|chr1 (39786304-39786396) |
| |
|
1055-1338, gnl|bosTau2|chr22 (18876917-18877206) |
|
1055-1338, gnl|Hg17|chr2 (101344284-101344579) |
|
1055-1338, gnl|Mm7|chr1 (39786538-39786821) |
| |
|
1394-1815, gnl|bosTau2|chr22 (18877236-18877644) |
|
1394-1815, gnl|Hg17|chr2 (101344638-101345117) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-146, gnl|bosTau2|chr19 (2758711-2758565) |
|
1-146, gnl|Hg17|chr2 (101328313-101328459) |
|
1-146, gnl|Mm7|chr1 (39777573-39777719) |
| |
|
825-935, gnl|bosTau2|chr22 (18875871-18875981) |
|
825-935, gnl|Hg17|chr2 (101344051-101344157) |
|
825-935, gnl|Mm7|chr1 (39786304-39786396) |
| |
|
1055-1338, gnl|bosTau2|chr22 (18876917-18877206) |
|
1055-1338, gnl|Hg17|chr2 (101344284-101344579) |
|
1055-1338, gnl|Mm7|chr1 (39786538-39786821) |
| |
|
1394-1815, gnl|bosTau2|chr22 (18877236-18877644) |
|
1394-1815, gnl|Hg17|chr2 (101344638-101345117) |
|
cte (0.58548) |
|
nlu (0.383362) |
|
sag (0.36543) |
|
cty (0.31224) |
|
liv (0.292569) |
|
cga (0.279096) |
|
eep (0.245128) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
sto (0.179824) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
ski (0.146735) |
|
lin (0.145603) |
|
nca (0.136874) |
|
ova (0.129132) |
|
ret (0.128733) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cly (0.120642) |
|
med (0.116252) |
|
ecc (0.115035) |
|
cte (0.58548) |
|
nlu (0.383362) |
|
sag (0.36543) |
|
cty (0.31224) |
|
liv (0.292569) |
|
cga (0.279096) |
|
eep (0.245128) |
|
mas (0.210305) |
|
fcc (0.197785) |
|
sto (0.179824) |
|
ill (0.175593) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
cut (0.169924) |
|
fhi (0.169578) |
|
cki (0.165235) |
|
nco (0.161734) |
|
csp (0.161186) |
|
ski (0.146735) |
|
lin (0.145603) |
|
nca (0.136874) |
|
ova (0.129132) |
|
ret (0.128733) |
|
thg (0.126791) |
|
bla (0.124347) |
|
cly (0.120642) |
|
med (0.116252) |
|
ecc (0.115035) |
