Non-Coding RNA Search

Ss1.1-Pig4-TMW8029M19.3

Sequence:


               
               AGCTCCAATTCTAACAAACGTCTTTTTGATTGGAAATTGAAGAATCAGGCCACGTTTGAG
ATTGGTACTAGCAATGGGCATAACTTCCATCTATGGATTTAAATCCTTTGGAGGAACATC
CATTTTAGATTTTTGCAGATGTCCTCATGTGGCAGGGCTTTCCAAGTGGCTTGGTCTGTT
CTTCCAGAAATCTGCGTAAGAACTGATTCCCCATATATCATATTTTTTTTAATCTCCCCA
GGCCTCCCGAAACCTTGGTAGCCAAATGAAACACAGTCAAGTGACTGTGTTTGGTTTCGT
TTTTTTTAACTGCTGGCCCTCTGAGGCTGGACGTTTCTGCACCAGATAATCGAAGGTTTC
AGTGATGCCAGTGGACCAGCACTCTGTGCTCGGAGTCCAAGGATCCCCATAGTGTTAATG
GAATCTCTAAGGGTGTGGTCCTGACCTATGAGTGGCCAAATTGTTAACCCTGGAGAGATG
ATTTGTGGCCTTCTTGAAATAAAACAGTTTGAAAAGACCAGGCCTGACCTCTGATCTGTG
TGTAAAGAATTAGCATCCGCCCTGTAGATCTGCAAGAGAAGGCTCCCTCCTGCAGTGCTA
TCTCTTGGTGAATGCTAACTCTGCTCACGGGCCTTTTGGGGAAAGGACAGTGAAAAGCCT
CTAGAGAGGTAAGTTTCCCACCCTTCCAACCTCTCTCCAGCTGCAGCTTGCTTGGTGCTG
TCAGAATCTGGATTTGGGGGGAGTGTCTCTGTAGTGGAACCAGTGACAGAAGCTGTTCTT
TAGAATTTTCAGGATGGCTGTATTCTGCGGTCAGAATGAGAGAGTCAAGCTGGGCAGAAT
CTCTCGCCAAGAGTTCAGGTAAGGTAAAGTTTATTCACTGGGAATGCTTTCCACAGCCAG
ACAGCTATGCTGACAATCTCGAGTTTTCTCCCAGTTTGTTTAAATTTAAATGATGCATTT
GTAACCTTTTAAAACTCAATTTGGGTTGGATTTTTCATGAAAACCTTTTTTTTTCAATCC
CCCTGTATCCCATACAAAATGGTTTGAAATGTAATTGTTTTTTTAAAAACCCTGTGTGTT
GGAAATTCTTTAATCTGCTGTTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGCTCCAATTCTAACAAACGTCTTTTTGATTGGAAATTGAAGAATCAGGCCACGTTTGAG
ATTGGTACTAGCAATGGGCATAACTTCCATCTATGGATTTAAATCCTTTGGAGGAACATC
CATTTTAGATTTTTGCAGATGTCCTCATGTGGCAGGGCTTTCCAAGTGGCTTGGTCTGTT
CTTCCAGAAATCTGCGTAAGAACTGATTCCCCATATATCATATTTTTTTTAATCTCCCCA
GGCCTCCCGAAACCTTGGTAGCCAAATGAAACACAGTCAAGTGACTGTGTTTGGTTTCGT
TTTTTTTAACTGCTGGCCCTCTGAGGCTGGACGTTTCTGCACCAGATAATCGAAGGTTTC
AGTGATGCCAGTGGACCAGCACTCTGTGCTCGGAGTCCAAGGATCCCCATAGTGTTAATG
GAATCTCTAAGGGTGTGGTCCTGACCTATGAGTGGCCAAATTGTTAACCCTGGAGAGATG
ATTTGTGGCCTTCTTGAAATAAAACAGTTTGAAAAGACCAGGCCTGACCTCTGATCTGTG
TGTAAAGAATTAGCATCCGCCCTGTAGATCTGCAAGAGAAGGCTCCCTCCTGCAGTGCTA
TCTCTTGGTGAATGCTAACTCTGCTCACGGGCCTTTTGGGGAAAGGACAGTGAAAAGCCT
CTAGAGAGGTAAGTTTCCCACCCTTCCAACCTCTCTCCAGCTGCAGCTTGCTTGGTGCTG
TCAGAATCTGGATTTGGGGGGAGTGTCTCTGTAGTGGAACCAGTGACAGAAGCTGTTCTT
TAGAATTTTCAGGATGGCTGTATTCTGCGGTCAGAATGAGAGAGTCAAGCTGGGCAGAAT
CTCTCGCCAAGAGTTCAGGTAAGGTAAAGTTTATTCACTGGGAATGCTTTCCACAGCCAG
ACAGCTATGCTGACAATCTCGAGTTTTCTCCCAGTTTGTTTAAATTTAAATGATGCATTT
GTAACCTTTTAAAACTCAATTTGGGTTGGATTTTTCATGAAAACCTTTTTTTTTCAATCC
CCCTGTATCCCATACAAAATGGTTTGAAATGTAATTGTTTTTTTAAAAACCCTGTGTGTT
GGAAATTCTTTAATCTGCTGTTTC

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               255-362, - strand, RNAz p=0.767287
               

               
               507-666, - strand, RNAz p=0.990556
               

               
               747-866, + strand, RNAz p=0.511257

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               255-362, - strand, RNAz p=0.767287
               

               
               507-666, - strand, RNAz p=0.990556
               

               
               747-866, + strand, RNAz p=0.511257

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               576-699, - strand, RNAmicro p=1

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               576-699, - strand, RNAmicro p=1

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1104, gnl|bosTau2|chr1 (51622520-51621398)
               

               
               1-1104, gnl|Hg17|chr3 (185186686-185185557)
               

               
               1-1104, gnl|Mm7|chr16 (19953125-19952054)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1104, gnl|bosTau2|chr1 (51622520-51621398)
               

               
               1-1104, gnl|Hg17|chr3 (185186686-185185557)
               

               
               1-1104, gnl|Mm7|chr16 (19953125-19952054)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cov (0.132153)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.132153)
               

               
               ecc (0.115035)

	255-362, - strand, RNAz p=0.767287
	507-666, - strand, RNAz p=0.990556
	747-866, + strand, RNAz p=0.511257

	1-1104, gnl\|bosTau2\|chr1 (51622520-51621398)
	1-1104, gnl\|Hg17\|chr3 (185186686-185185557)
	1-1104, gnl\|Mm7\|chr16 (19953125-19952054)