Non-Coding RNA Search

Ss1.1-Pig4-TMW8029M20.5

Sequence:


               
               CATGGTGGCTCGTGGACTTGTCCGGGAGGCTCGGGAGGACTTGGAGGGTCAACAGGCCAA
GCTGAAGGAGGTGAGGGACCGTTTGGACCGCATCTCCAGAGACGATAACCAGTATCTGGA
ACTGGCTACTCTGGAGCACAGGATGCTGCAGACACATTCTCTAGACACCAGAGCATGTCT
GGTCAGACCCACTGCTGCCAGGGGAAGAGGATAGTGCCGCTCACCTTGACCAGCCCCAAT
TTCTTTGCTCCCAAAAAGTGTTCATGGTGGCTCGTGGACTTGTCCGGGAGGCTCGGGAGG
ACTTGGAGGGTCAACAGGCCAAGCTGAAGGAGGTGAGGGACCGTTTGGACCGCATCTCCA
GAGACGATAACCAGTATCTGGAACTGGCTACTCTGGAGCACAGGATGCTGCAGGAGGAGA
AGAGGCTGCGCATGACCTATCTGCGTGCCGAAGACTCTGAGCGAGAGAAGTTCTCCCTCT
TCTCTGCAGCTGTGCGGGAAAGTCATGAGAAGGAGCGCACTCGGGCTGAGAGAACCAAGA
ACTGGTCCCTCATTGGGTCCGTCCTGGGGGCCCTGATTGGTGTGGCTGGCTCCACCTATG
TGAACCGTGTGCGGTTACAGGAGCTGAAGGCCTTGCTTCTGGAGGCTCAGAAAGGGCCTG
TGAGCCTCCAGGAGGCCATTCGAGAACAGGCATCCAGCTACTCCCTCCAGCAGAGGGACC
TCCGTGACCTCATGGCGGACTTGAGGGGCCTGGTGCAAGCCGGGCCTGGGCAGAGCTCTT
TGTCCCAGGCAGGTACTTCACCTACCCATGACAGAGACACAGGTGTCCTTTCAGCTGCCC
TGAAAGAGCAGCTCAGCCATTCCAGGCAGGTCCATTCATGTCTAGAAGCTTTACGAGAGC
AACTTGATGGCCTGGAAAAGACTTTCAGCCAAATGGCTGGGGTGGTTCAGCTTGCAAAGG
CTGCAGCGCATCCAGGCATGGCGGAGCCAGGAGATGGGCCTCTGCCTGGCTCCTTGCTGG
AACAGGGGAGCGTGATCTTGGCGCTGTCGGACACGGAGCAGAGGCTACAAGCCCAGGTCA
ACAGGAACACCATCTGTGGCACACTGGTCACCTGCATGACATTTGTGGCCATCCTGCCTG
TGCTTTATACACTGTTCAGGGCCAGCTAGCCCCTGGACGCTTTTCCAGAGGGTCTGAAGA
AATAGGTATGGATGTGGATTTAATTAGAGAGTGAAGCAGTTGAACTGAGCCTTTGGGTGT
GCACTCAGCCTGAGGCTGAGTCGGAGCACTGTCTGTGTGGCTTACCAGCTGATACACTTT
GCTTTTTAGGCAGCACTCATTTACATTAACTGTCAAAAGTTTGTGCTAATGTCCAATTAA
AATGTGTTTGGGGTTTATTATTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGTGGCTCGTGGACTTGTCCGGGAGGCTCGGGAGGACTTGGAGGGTCAACAGGCCAA
GCTGAAGGAGGTGAGGGACCGTTTGGACCGCATCTCCAGAGACGATAACCAGTATCTGGA
ACTGGCTACTCTGGAGCACAGGATGCTGCAGACACATTCTCTAGACACCAGAGCATGTCT
GGTCAGACCCACTGCTGCCAGGGGAAGAGGATAGTGCCGCTCACCTTGACCAGCCCCAAT
TTCTTTGCTCCCAAAAAGTGTTCATGGTGGCTCGTGGACTTGTCCGGGAGGCTCGGGAGG
ACTTGGAGGGTCAACAGGCCAAGCTGAAGGAGGTGAGGGACCGTTTGGACCGCATCTCCA
GAGACGATAACCAGTATCTGGAACTGGCTACTCTGGAGCACAGGATGCTGCAGGAGGAGA
AGAGGCTGCGCATGACCTATCTGCGTGCCGAAGACTCTGAGCGAGAGAAGTTCTCCCTCT
TCTCTGCAGCTGTGCGGGAAAGTCATGAGAAGGAGCGCACTCGGGCTGAGAGAACCAAGA
ACTGGTCCCTCATTGGGTCCGTCCTGGGGGCCCTGATTGGTGTGGCTGGCTCCACCTATG
TGAACCGTGTGCGGTTACAGGAGCTGAAGGCCTTGCTTCTGGAGGCTCAGAAAGGGCCTG
TGAGCCTCCAGGAGGCCATTCGAGAACAGGCATCCAGCTACTCCCTCCAGCAGAGGGACC
TCCGTGACCTCATGGCGGACTTGAGGGGCCTGGTGCAAGCCGGGCCTGGGCAGAGCTCTT
TGTCCCAGGCAGGTACTTCACCTACCCATGACAGAGACACAGGTGTCCTTTCAGCTGCCC
TGAAAGAGCAGCTCAGCCATTCCAGGCAGGTCCATTCATGTCTAGAAGCTTTACGAGAGC
AACTTGATGGCCTGGAAAAGACTTTCAGCCAAATGGCTGGGGTGGTTCAGCTTGCAAAGG
CTGCAGCGCATCCAGGCATGGCGGAGCCAGGAGATGGGCCTCTGCCTGGCTCCTTGCTGG
AACAGGGGAGCGTGATCTTGGCGCTGTCGGACACGGAGCAGAGGCTACAAGCCCAGGTCA
ACAGGAACACCATCTGTGGCACACTGGTCACCTGCATGACATTTGTGGCCATCCTGCCTG
TGCTTTATACACTGTTCAGGGCCAGCTAGCCCCTGGACGCTTTTCCAGAGGGTCTGAAGA
AATAGGTATGGATGTGGATTTAATTAGAGAGTGAAGCAGTTGAACTGAGCCTTTGGGTGT
GCACTCAGCCTGAGGCTGAGTCGGAGCACTGTCTGTGTGGCTTACCAGCTGATACACTTT
GCTTTTTAGGCAGCACTCATTTACATTAACTGTCAAAAGTTTGTGCTAATGTCCAATTAA
AATGTGTTTGGGGTTTATTATTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9HA01_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9HA01_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               449-1045, + strand, RNAz p=0.939212

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               449-1045, + strand, RNAz p=0.939212

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_024661, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_024661, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-151, gnl|bosTau2|chr22 (39014473-39014323)
               

               
               1-151, gnl|Hg17|chr3 (48450271-48450121)
               

               
               1-151, gnl|Mm7|chr9 (108801118-108801268)
               


               
               410-1278, gnl|bosTau2|chr22 (39013791-39012934)
               

               
               410-1278, gnl|Hg17|chr3 (48449584-48448713)
               

               
               410-1278, gnl|Mm7|chr9 (108801774-108802620)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-151, gnl|bosTau2|chr22 (39014473-39014323)
               

               
               1-151, gnl|Hg17|chr3 (48450271-48450121)
               

               
               1-151, gnl|Mm7|chr9 (108801118-108801268)
               


               
               410-1278, gnl|bosTau2|chr22 (39013791-39012934)
               

               
               410-1278, gnl|Hg17|chr3 (48449584-48448713)
               

               
               410-1278, gnl|Mm7|chr9 (108801774-108802620)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nje (0.16592)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.16592)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)

	1-151, gnl\|bosTau2\|chr22 (39014473-39014323)
	1-151, gnl\|Hg17\|chr3 (48450271-48450121)
	1-151, gnl\|Mm7\|chr9 (108801118-108801268)

	410-1278, gnl\|bosTau2\|chr22 (39013791-39012934)
	410-1278, gnl\|Hg17\|chr3 (48449584-48448713)
	410-1278, gnl\|Mm7\|chr9 (108801774-108802620)

	nje (0.16592)
	pty (0.142714)
	csk (0.140746)
	pla (0.133672)
	eru (0.120048)
	ebs (0.118301)