Non-Coding RNA Search

Ss1.1-Pig4-TMW8029M21.5

Sequence:


               
               CGGCTGTCTCCTCGTGACGAGTACAAGCCACTGGATCTATCTGATTCCACATTGTCTTAC
ACTGAAACGGAGGCCAGCAACTCCCTCATCACGGCTCCGGGTGAATTCTCAGACGCCAGC
ATGTCTCCGGATGCCACCAAGCCGAGCCATTGGTGCAGCGTGGCCTACTGGGAGCACCGG
ACACGTGTGGGCCGCCTCTACGCGGTGTACGACCAGGCCGTCAGCATCTTCTACGACCTA
CCTCAGGGCAGCGGCTTCTGCCTGGGCCAGCTCAACCTGGAGCAGCGCAGCGAGTCGGTG
CGGCGCACGCGCAGCAAGATCGGCTTTGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTG
TGGGCCTATAACCGCGGCGAGCACCCCATCTTCGTCAACTCCCCCACGCTGGATGCGCCC
GGCGGCCGCGCCCTGGTGGTCCGCAAGGTGCCCCCCGGCTACTCCATCAAGGTGTTCGAC
TTCGAGCGCTCCGGCCTCCTCCAGCACGGGCCCGAGCCCGATGCCGCCGACGGCCCCTAC
GACCCCAACAGCGTCCGCATCAGCTTCGCCAAGGGCTGGGGGCCCTGCTACTCCCGGCAG
TTCATCACCTCCTGCCCCTGCTGGCTCGAGATCCTTCTCAACAACCACAGATAGCGGCCC
CGCCGCCGGGCCGGTGCCCAGAGACACAGCCCCACCGGAAGAACCCTCCCCCAGATATCA
TCTACCTAGATTTAATATAAAGTTTTATATATTATATGGAAATATATATTATACTTGTAA
TTATGGAGTCATTTTTACAATGTAATTATTTATGTATGGTGCAATGTGTGTATATGGACA
AAACAAGAAAGACGCACTTTGGCTTATAATACAGATATATTTTCTTTCTTTTCCTCCTTC
CTCTTTTTTTTAAAGAGAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTA
TGGTTTTTGAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCTGTCTCCTCGTGACGAGTACAAGCCACTGGATCTATCTGATTCCACATTGTCTTAC
ACTGAAACGGAGGCCAGCAACTCCCTCATCACGGCTCCGGGTGAATTCTCAGACGCCAGC
ATGTCTCCGGATGCCACCAAGCCGAGCCATTGGTGCAGCGTGGCCTACTGGGAGCACCGG
ACACGTGTGGGCCGCCTCTACGCGGTGTACGACCAGGCCGTCAGCATCTTCTACGACCTA
CCTCAGGGCAGCGGCTTCTGCCTGGGCCAGCTCAACCTGGAGCAGCGCAGCGAGTCGGTG
CGGCGCACGCGCAGCAAGATCGGCTTTGGCATCCTGCTCAGCAAGGAGCCCGACGGCGTG
TGGGCCTATAACCGCGGCGAGCACCCCATCTTCGTCAACTCCCCCACGCTGGATGCGCCC
GGCGGCCGCGCCCTGGTGGTCCGCAAGGTGCCCCCCGGCTACTCCATCAAGGTGTTCGAC
TTCGAGCGCTCCGGCCTCCTCCAGCACGGGCCCGAGCCCGATGCCGCCGACGGCCCCTAC
GACCCCAACAGCGTCCGCATCAGCTTCGCCAAGGGCTGGGGGCCCTGCTACTCCCGGCAG
TTCATCACCTCCTGCCCCTGCTGGCTCGAGATCCTTCTCAACAACCACAGATAGCGGCCC
CGCCGCCGGGCCGGTGCCCAGAGACACAGCCCCACCGGAAGAACCCTCCCCCAGATATCA
TCTACCTAGATTTAATATAAAGTTTTATATATTATATGGAAATATATATTATACTTGTAA
TTATGGAGTCATTTTTACAATGTAATTATTTATGTATGGTGCAATGTGTGTATATGGACA
AAACAAGAAAGACGCACTTTGGCTTATAATACAGATATATTTTCTTTCTTTTCCTCCTTC
CTCTTTTTTTTAAAGAGAATGATACAGCAGAGCTAGGTGGAAAAGCCTGGGTTTGGTGTA
TGGTTTTTGAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61875342|ref|XP_588583.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61875342|ref|XP_588583.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               668-772, - strand, RNAz p=0.88989
               

               
               876-972, - strand, RNAz p=0.999863

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               668-772, - strand, RNAz p=0.88989
               

               
               876-972, - strand, RNAz p=0.999863

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               110-972, gnl|bosTau2|chr10 (6742533-6741636)
               

               
               110-972, gnl|Hg17|chr15 (64860386-64861320)
               

               
               110-972, gnl|Mm7|chr9 (63982490-63981593)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               110-972, gnl|bosTau2|chr10 (6742533-6741636)
               

               
               110-972, gnl|Hg17|chr15 (64860386-64861320)
               

               
               110-972, gnl|Mm7|chr9 (63982490-63981593)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nlu (0.191681)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               eje (0.0988338)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cje (0.165235)
               

               
               cki (0.165235)
               

               
               che (0.136314)
               

               
               eje (0.0988338)

	668-772, - strand, RNAz p=0.88989
	876-972, - strand, RNAz p=0.999863

	110-972, gnl\|bosTau2\|chr10 (6742533-6741636)
	110-972, gnl\|Hg17\|chr15 (64860386-64861320)
	110-972, gnl\|Mm7\|chr9 (63982490-63981593)

	nlu (0.191681)
	cje (0.165235)
	cki (0.165235)
	che (0.136314)
	eje (0.0988338)