Ss1.1-Pig4-TMW8029N02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCCTCTCGGAGGCGGGAGGAGCCTGCCGCAGCCATGTTTGTGGCGCGCAGCATCGCGGC GGACCACAAGGATCTCATCCACGATGTGTCTTTCGACTTCCATGGGCGGCGGATGGCCAC CTGCTCCAGCGACCAGAGCGTCAAGGTCTGGGACAAAAGTGAAAGTGGGGATTGGCATTG CACTGCTAGCTGGAAGACACATAGTGGATCCGTGTGGCGTGTGACGTGGGCCCATCCTGA ATTTGGCCAGGTTTTGGCTTCCTGTTCCTTTGACCGAACAGCTGCTGTTTGGGAAGAAAT AGTAGGAGAATCAAATGATAAACTGCGAGGACAGAGCCACTGGGTGAAGAGGACAACGCT AGTGGACAGTAGGACATCTGTTACTGATGTAAAGTTTGCTCCTAAGCATATGGGTCTTAT GTTAGCCACCTGCTCAGCAGACGGTATAGTAAGAATATATGAGGCACCAGATGTCATGAA CCTCAGCCAGTGGTCTCTGCAGCATGAGGTTTCCTGCAAGCTAAGCTGCAGTTGCATTTC TTGGAACCCTTCAAGCTCTCGAGCTCACCCCCCCATGATCGCAGTGGGCAGTGATGATGG TAGTCCTAATGCAATGGCCAAGGTGCAGATTTTCGAATATAATGAGAACACCAGGAAATA TGCCAAAGCCGAAACTCTCATGACAGTCACAGATCCTGTCCATGACATTGCTTTTGCTCC AAACTTGGGGAGGTCATTCCATATCCTAGCCATAGCAACCAAAGATGTGAGAATTTTTAC ACTGAAGCCTGTGAGGAAAGAACTTACTTCCTCCGGTGGGCCAACCAAATTTGAAATCCA GGTGGTGGCTCAGTTTGATAATCATAATTCCCAGGTCTGGAGAGTGAGCTGGAATATAAC AGGGACAGTGCTGGCATCATCAGGAGACGATGGCTGTGTCCGACTGTGGAAAGCTAACTA TATGGACAACTGGAAGTGCACTGGGATTCTGAAAGGTAACGGGAGCCCTGTCAGTGGGAG TTCTCAGCAGGGAAACGCAAATCCTTCCCTAGGTTCAAATACCCCAAATCTGCAGCATTC ACTAAATGGATCTTCTGCCAGCAGAAAGCACAGCTGAGTACCAGCTAACTGGAGTAACTT ATGGAGCCGGCCCAGCTATGCCCACACACAGGAATGTCCTCCTCTGGTAGAGCACTCTTG CGCTGCTGACACTGCCAGCCTCCAGTATCCTCACCCTCGCAGACCATCTCTCTCTCGGCC TCTTAATCCCTTGCCTGAGAATGAAGGGGTTTAAAACACTGATTTAACACTTAAAGGCCT TATTCAAGTGCTTGTAAATGCTTTCATTCTTGGCTTTTTGTTTTTCTTCATTTTCTTTCA GAAGATTTTTCTAATTTAGGGTCTGTCTTGCATGTACTACAACCAGAACATGGTGTTTGG AACCTAAATGTGTTTGTGCTTCCACATCAAAGGAATAGTTGCCTCGTTGGTTGATAACCT TTGATGAAATATGAGATGTGTACACACAACAGTGACTCTGAGAGTTAACACACAGTAGCT GACTTCAGAACCTTTGGTGAAATACGAGAGGTGTACACATGACGGCCACAGTAGCTGGCT TCAGAATGCCTGTTCTGTACATTTTATTTTGAACTGTCACGGTATTAAGTTTCTTGTGAT TTGTCATACTGGTTAATGTGAAAGCATATCATTACAAAGATCATTATAAAGTTCACTTTG CCTTTGAGACATATTAAGAAATGTTCTTAATTTTACAGGCTAATGTTGCAAATGACTAGT TTGTAAAATAAATCATTCCTGTGTATAAAGCAGCAAAACTTAATATGGTTTGGTCTTTTT TTTTTTTTGTTTTGTTTTAAAGGAGACTGCCTCTTTTACTACTTGGAATTACTGTTTAAA ACTTTTGTAATTATTGTCCAAGTAGATTCTTTAATAAAATATATTTTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCCTCTCGGAGGCGGGAGGAGCCTGCCGCAGCCATGTTTGTGGCGCGCAGCATCGCGGC GGACCACAAGGATCTCATCCACGATGTGTCTTTCGACTTCCATGGGCGGCGGATGGCCAC CTGCTCCAGCGACCAGAGCGTCAAGGTCTGGGACAAAAGTGAAAGTGGGGATTGGCATTG CACTGCTAGCTGGAAGACACATAGTGGATCCGTGTGGCGTGTGACGTGGGCCCATCCTGA ATTTGGCCAGGTTTTGGCTTCCTGTTCCTTTGACCGAACAGCTGCTGTTTGGGAAGAAAT AGTAGGAGAATCAAATGATAAACTGCGAGGACAGAGCCACTGGGTGAAGAGGACAACGCT AGTGGACAGTAGGACATCTGTTACTGATGTAAAGTTTGCTCCTAAGCATATGGGTCTTAT GTTAGCCACCTGCTCAGCAGACGGTATAGTAAGAATATATGAGGCACCAGATGTCATGAA CCTCAGCCAGTGGTCTCTGCAGCATGAGGTTTCCTGCAAGCTAAGCTGCAGTTGCATTTC TTGGAACCCTTCAAGCTCTCGAGCTCACCCCCCCATGATCGCAGTGGGCAGTGATGATGG TAGTCCTAATGCAATGGCCAAGGTGCAGATTTTCGAATATAATGAGAACACCAGGAAATA TGCCAAAGCCGAAACTCTCATGACAGTCACAGATCCTGTCCATGACATTGCTTTTGCTCC AAACTTGGGGAGGTCATTCCATATCCTAGCCATAGCAACCAAAGATGTGAGAATTTTTAC ACTGAAGCCTGTGAGGAAAGAACTTACTTCCTCCGGTGGGCCAACCAAATTTGAAATCCA GGTGGTGGCTCAGTTTGATAATCATAATTCCCAGGTCTGGAGAGTGAGCTGGAATATAAC AGGGACAGTGCTGGCATCATCAGGAGACGATGGCTGTGTCCGACTGTGGAAAGCTAACTA TATGGACAACTGGAAGTGCACTGGGATTCTGAAAGGTAACGGGAGCCCTGTCAGTGGGAG TTCTCAGCAGGGAAACGCAAATCCTTCCCTAGGTTCAAATACCCCAAATCTGCAGCATTC ACTAAATGGATCTTCTGCCAGCAGAAAGCACAGCTGAGTACCAGCTAACTGGAGTAACTT ATGGAGCCGGCCCAGCTATGCCCACACACAGGAATGTCCTCCTCTGGTAGAGCACTCTTG CGCTGCTGACACTGCCAGCCTCCAGTATCCTCACCCTCGCAGACCATCTCTCTCTCGGCC TCTTAATCCCTTGCCTGAGAATGAAGGGGTTTAAAACACTGATTTAACACTTAAAGGCCT TATTCAAGTGCTTGTAAATGCTTTCATTCTTGGCTTTTTGTTTTTCTTCATTTTCTTTCA GAAGATTTTTCTAATTTAGGGTCTGTCTTGCATGTACTACAACCAGAACATGGTGTTTGG AACCTAAATGTGTTTGTGCTTCCACATCAAAGGAATAGTTGCCTCGTTGGTTGATAACCT TTGATGAAATATGAGATGTGTACACACAACAGTGACTCTGAGAGTTAACACACAGTAGCT GACTTCAGAACCTTTGGTGAAATACGAGAGGTGTACACATGACGGCCACAGTAGCTGGCT TCAGAATGCCTGTTCTGTACATTTTATTTTGAACTGTCACGGTATTAAGTTTCTTGTGAT TTGTCATACTGGTTAATGTGAAAGCATATCATTACAAAGATCATTATAAAGTTCACTTTG CCTTTGAGACATATTAAGAAATGTTCTTAATTTTACAGGCTAATGTTGCAAATGACTAGT TTGTAAAATAAATCATTCCTGTGTATAAAGCAGCAAAACTTAATATGGTTTGGTCTTTTT TTTTTTTTGTTTTGTTTTAAAGGAGACTGCCTCTTTTACTACTTGGAATTACTGTTTAAA ACTTTTGTAATTATTGTCCAAGTAGATTCTTTAATAAAATATATTTTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1068-1176, - strand, RNAz p=0.736359 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1068-1176, - strand, RNAz p=0.736359 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 2-165, gnl|bosTau2|chr24 (31227474-31227637) | |
| 2-165, gnl|Hg17|chr18 (12938080-12938251) | |
| 2-165, gnl|Mm7|chr18 (68167269-68167431) | |
| 343-555, gnl|bosTau2|chr24 (31235165-31235377) | |
| 343-555, gnl|Hg17|chr18 (12953158-12953370) | |
| 343-555, gnl|Mm7|chr18 (68177181-68177393) | |
| 794-957, gnl|bosTau2|chr24 (31242017-31242180) | |
| 794-957, gnl|canFam2|chr7 (81425002-81425180) | |
| 794-957, gnl|danRer3|chr19 (40610489-40610668) | |
| 794-957, gnl|dasNov1|scaffold_153328 (3414-3236) | |
| 794-957, gnl|echTel1|scaffold_317041 (51752-51925) | |
| 794-957, gnl|fr1|chrUn (139758203-139758041) | |
| 794-957, gnl|galGal2|chr2 (96691175-96691344) | |
| 794-957, gnl|hg17|chr18 (12972502-12972680) | |
| 794-957, gnl|Hg17|chr18 (12972515-12972678) | |
| 794-957, gnl|loxAfr1|scaffold_40946 (17111-16941) | |
| 794-957, gnl|mm7|chr18 (68181625-68181798) | |
| 794-957, gnl|Mm7|chr18 (68181634-68181796) | |
| 794-957, gnl|monDom2|scaffold_21 (18787143-18786963) | |
| 794-957, gnl|oryCun1|scaffold_106702 (4178-4000) | |
| 794-957, gnl|panTro1|chr17_random (4667241-4667063) | |
| 794-957, gnl|rheMac2|chr18 (1750186-1750008) | |
| 794-957, gnl|rn3|chr18 (64416125-64416298) | |
| 794-957, gnl|tetNig1|chr8 (10177997-10178159) | |
| 794-957, gnl|xenTro1|scaffold_202 (1253006-1252828) | |
| 1068-1176, gnl|bosTau2|chr26 (6079743-6079851) | |
| 1177-1567, gnl|bosTau2|chr24 (31246241-31246623) | |
| 1177-1567, gnl|Hg17|chr18 (12976939-12977325) | |
| 1177-1567, gnl|Mm7|chr18 (68187087-68187453) | |
| 1616-1968, gnl|bosTau2|chr24 (31246616-31246941) | |
| 1616-1968, gnl|Hg17|chr18 (12977318-12977661) | |
| 1616-1968, gnl|Mm7|chr18 (68187447-68187771) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-165, gnl|bosTau2|chr24 (31227474-31227637) | |
| 2-165, gnl|Hg17|chr18 (12938080-12938251) | |
| 2-165, gnl|Mm7|chr18 (68167269-68167431) | |
| 343-555, gnl|bosTau2|chr24 (31235165-31235377) | |
| 343-555, gnl|Hg17|chr18 (12953158-12953370) | |
| 343-555, gnl|Mm7|chr18 (68177181-68177393) | |
| 794-957, gnl|bosTau2|chr24 (31242017-31242180) | |
| 794-957, gnl|canFam2|chr7 (81425002-81425180) | |
| 794-957, gnl|danRer3|chr19 (40610489-40610668) | |
| 794-957, gnl|dasNov1|scaffold_153328 (3414-3236) | |
| 794-957, gnl|echTel1|scaffold_317041 (51752-51925) | |
| 794-957, gnl|fr1|chrUn (139758203-139758041) | |
| 794-957, gnl|galGal2|chr2 (96691175-96691344) | |
| 794-957, gnl|hg17|chr18 (12972502-12972680) | |
| 794-957, gnl|Hg17|chr18 (12972515-12972678) | |
| 794-957, gnl|loxAfr1|scaffold_40946 (17111-16941) | |
| 794-957, gnl|mm7|chr18 (68181625-68181798) | |
| 794-957, gnl|Mm7|chr18 (68181634-68181796) | |
| 794-957, gnl|monDom2|scaffold_21 (18787143-18786963) | |
| 794-957, gnl|oryCun1|scaffold_106702 (4178-4000) | |
| 794-957, gnl|panTro1|chr17_random (4667241-4667063) | |
| 794-957, gnl|rheMac2|chr18 (1750186-1750008) | |
| 794-957, gnl|rn3|chr18 (64416125-64416298) | |
| 794-957, gnl|tetNig1|chr8 (10177997-10178159) | |
| 794-957, gnl|xenTro1|scaffold_202 (1253006-1252828) | |
| 1068-1176, gnl|bosTau2|chr26 (6079743-6079851) | |
| 1177-1567, gnl|bosTau2|chr24 (31246241-31246623) | |
| 1177-1567, gnl|Hg17|chr18 (12976939-12977325) | |
| 1177-1567, gnl|Mm7|chr18 (68187087-68187453) | |
| 1616-1968, gnl|bosTau2|chr24 (31246616-31246941) | |
| 1616-1968, gnl|Hg17|chr18 (12977318-12977661) | |
| 1616-1968, gnl|Mm7|chr18 (68187447-68187771) |
| Expressed library(ies): 35 entry(ies) | More info |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
| cbl (0.688784) | |
| bfe (0.599431) | |
| pro (0.512033) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| ski (0.29347) | |
| csk (0.281492) | |
| fce (0.271592) | |
| ute (0.265569) | |
| ova (0.258264) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 35 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cbl (0.688784) | |
| bfe (0.599431) | |
| pro (0.512033) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| ski (0.29347) | |
| csk (0.281492) | |
| fce (0.271592) | |
| ute (0.265569) | |
| ova (0.258264) | |
| thg (0.253582) | |
| cbe (0.239234) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| sag (0.182715) | |
| gul (0.177588) | |
| fty (0.17584) | |
| ton (0.1755) | |
| tbr (0.154178) | |
| fat (0.147427) | |
| liv (0.146284) | |
| lin (0.145603) | |
| spl (0.143184) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| sug (0.127291) | |
| ese (0.126502) | |
| bla (0.124347) | |
| spc (0.113366) | |
| eje (0.0988338) |