Non-Coding RNA Search

Ss1.1-Pig4-TMW8029N08.5

Sequence:


               
               GGTGAGCAGCGAGCGCAACCGAGGATTGCAGCTGGAAGACCTCAAGCAGCAGCTGCAGCA
GGCCGAGGAGGCCCTGGTGGCCAAACAGGAAGTGATCGACAAGCTGAAGGAGGAGGCCGA
GCAGCACAAGATTGTGATGGAGACGGTTCCGGTGCTCAAAGCCCAGGCCGACATCTACAA
GGCGGACTTCCAGGCCGAGCGGCAGGCCCGGGAGCAGCTGGCTGAGAGGAAGGAGCTCCT
GCAGGAGCAGCTGGAGCAGCTGCAGAGGGAGTACAGCCGGCTGAAGACCAGCTGCCAGGA
ATCGGCCAGGATCGAAGACATGAGGAAGCGGCACGTCGAGGTCTCCCAGCCCACCTTGCC
CCCCGCCCCAGCTCATCACTCCTTTCACCCGGCCCTGCCCAGCCAGAGGAGAAGCCCCCC
CGAGGAGCCCCCCAACTTCTGTTGCCCCAAGTGCCAGTACCAGGCTCCCGACATGGACAC
CCTGCAGATCCATGTCATGGAGTGTATCGAGTAGGCCGCCCGCCGCCGGCCAGCCCAGGA
CGCTGCGCTCTCCTGCTCCGAGACTGAGGGTGGCCCCTTCTCTGGGCCCCGGAGCCAGCT
GCGGGCCTCACGCCTCCGCCCCGCCTGCTGGTCGACCTCTTTCTGGGCGCACGGAGCCCA
GCCAGGCCTGACGCTCTGCTCTTTCTGTTTGTTCTGTCTGCTTGAACCGCTTGTCTCTGG
AGCTCGCTCATCCTCTGCCTGCACCAGCGAAGTCAGGAGTGAAGGCCGGGCTCTCGGAAG
GAGCTGCTTCCCCGGCCCAGACGGGCGGGACCCCTCCTGCCAGCCGCCTGGCACAGGGCA
GCGCCGCGGGCGTGGGCTGAGTGGTGGCCTGGTGGCGGCTGCGCCGAGTTGGATCGAACC
TGTCCGCTGCCCATGGACACTGGGTTTGTTACCGATCATCGTTTTATGGTCATAAATGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAGCAGCGAGCGCAACCGAGGATTGCAGCTGGAAGACCTCAAGCAGCAGCTGCAGCA
GGCCGAGGAGGCCCTGGTGGCCAAACAGGAAGTGATCGACAAGCTGAAGGAGGAGGCCGA
GCAGCACAAGATTGTGATGGAGACGGTTCCGGTGCTCAAAGCCCAGGCCGACATCTACAA
GGCGGACTTCCAGGCCGAGCGGCAGGCCCGGGAGCAGCTGGCTGAGAGGAAGGAGCTCCT
GCAGGAGCAGCTGGAGCAGCTGCAGAGGGAGTACAGCCGGCTGAAGACCAGCTGCCAGGA
ATCGGCCAGGATCGAAGACATGAGGAAGCGGCACGTCGAGGTCTCCCAGCCCACCTTGCC
CCCCGCCCCAGCTCATCACTCCTTTCACCCGGCCCTGCCCAGCCAGAGGAGAAGCCCCCC
CGAGGAGCCCCCCAACTTCTGTTGCCCCAAGTGCCAGTACCAGGCTCCCGACATGGACAC
CCTGCAGATCCATGTCATGGAGTGTATCGAGTAGGCCGCCCGCCGCCGGCCAGCCCAGGA
CGCTGCGCTCTCCTGCTCCGAGACTGAGGGTGGCCCCTTCTCTGGGCCCCGGAGCCAGCT
GCGGGCCTCACGCCTCCGCCCCGCCTGCTGGTCGACCTCTTTCTGGGCGCACGGAGCCCA
GCCAGGCCTGACGCTCTGCTCTTTCTGTTTGTTCTGTCTGCTTGAACCGCTTGTCTCTGG
AGCTCGCTCATCCTCTGCCTGCACCAGCGAAGTCAGGAGTGAAGGCCGGGCTCTCGGAAG
GAGCTGCTTCCCCGGCCCAGACGGGCGGGACCCCTCCTGCCAGCCGCCTGGCACAGGGCA
GCGCCGCGGGCGTGGGCTGAGTGGTGGCCTGGTGGCGGCTGCGCCGAGTTGGATCGAACC
TGTCCGCTGCCCATGGACACTGGGTTTGTTACCGATCATCGTTTTATGGTCATAAATGAC

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

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               366-557, gnl|bosTau2|chrX (14611004-14610812)
               

               
               366-557, gnl|Hg17|chrX (153356232-153356441)
               

               
               366-557, gnl|Mm7|chrX (69834860-69835065)
               


               
               560-932, gnl|bosTau2|chrX (14610772-14610392)
               

               
               560-932, gnl|Hg17|chrX (153356483-153356921)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               366-557, gnl|bosTau2|chrX (14611004-14610812)
               

               
               366-557, gnl|Hg17|chrX (153356232-153356441)
               

               
               366-557, gnl|Mm7|chrX (69834860-69835065)
               


               
               560-932, gnl|bosTau2|chrX (14610772-14610392)
               

               
               560-932, gnl|Hg17|chrX (153356483-153356921)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               eli (0.151814)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eli (0.151814)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               med (0.116252)

	366-557, gnl\|bosTau2\|chrX (14611004-14610812)
	366-557, gnl\|Hg17\|chrX (153356232-153356441)
	366-557, gnl\|Mm7\|chrX (69834860-69835065)

	560-932, gnl\|bosTau2\|chrX (14610772-14610392)
	560-932, gnl\|Hg17\|chrX (153356483-153356921)