Non-Coding RNA Search

Ss1.1-Pig4-TMW8029N13.3

Sequence:


               
               CCTCTAGACTCTAGCGGCCGCGCCTCGAGGTTGATTTTCCTTAGGAAGGAAGAGAACTCA
AACATGGTGACACTGAGGGTTTTAATTCAGGTAAAAAGGAGGCTGTGTTTCAAGGACCAG
AAATGAGGAAGTCAGAAGGAAGGAGATTAGGTTTCTGCTGTGATAAATTGAACCTGTTTA
ATTCTATGGCTTTTACATTTCTAACTAGGTTGAACCAGTTGTGTCACTCATTAGGTAGCT
TTCGATTTGTTTGAAAAGTACAAGAGTCCCTCCTACTGGACCTTGATCCAGCAAAAACAA
CTTACCTAACAACTTCAGACCGGCACCACGACACCTGCACGAAGAATGTTCTTTAGTTTT
TTGAATGGTTCTACCCGTGTGATTTATTTAAGCTTTCAAAATGATCAGAAAACTTTTTAT
TGTCCTGCTTTTGTCGTCTGAGACTCTTGGAGAAGCAAAGGAATCATTTCTCAGTTTTCC
AAATGTCGAAAAGACTGAAATACTTTTTTTCACAAAGACTGAAGAAACCGTTGTTGTAAG
GTCAAGTTACAGAGGTAAACAACCAAACTCCAACTACCTCTTTGTGCAGCTAGAAGATCC
TAAAATGCTGCAAGTGGTAAATGTGACCAAGACCTCATCGGATGTTACGAACTTTACCAT
AAACCTGGTGACGGTTGAAAACGGAGAGACAAATTTAACCATTCAGCTGTGGGATTCTGC
AGGTAGGCAAGAAAGACTCATTGAAGAAATAAAGAATGTCAGAGTCAGAGTGCTCAAACC
GAGACAAGACAACCTTTTCCGGGCCTCAAACCTTATGGACAGAAACATCCTAATGCTTTT
TCTACCAATGATACTGTTAAATAAATGTGCGTTCGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTCTAGACTCTAGCGGCCGCGCCTCGAGGTTGATTTTCCTTAGGAAGGAAGAGAACTCA
AACATGGTGACACTGAGGGTTTTAATTCAGGTAAAAAGGAGGCTGTGTTTCAAGGACCAG
AAATGAGGAAGTCAGAAGGAAGGAGATTAGGTTTCTGCTGTGATAAATTGAACCTGTTTA
ATTCTATGGCTTTTACATTTCTAACTAGGTTGAACCAGTTGTGTCACTCATTAGGTAGCT
TTCGATTTGTTTGAAAAGTACAAGAGTCCCTCCTACTGGACCTTGATCCAGCAAAAACAA
CTTACCTAACAACTTCAGACCGGCACCACGACACCTGCACGAAGAATGTTCTTTAGTTTT
TTGAATGGTTCTACCCGTGTGATTTATTTAAGCTTTCAAAATGATCAGAAAACTTTTTAT
TGTCCTGCTTTTGTCGTCTGAGACTCTTGGAGAAGCAAAGGAATCATTTCTCAGTTTTCC
AAATGTCGAAAAGACTGAAATACTTTTTTTCACAAAGACTGAAGAAACCGTTGTTGTAAG
GTCAAGTTACAGAGGTAAACAACCAAACTCCAACTACCTCTTTGTGCAGCTAGAAGATCC
TAAAATGCTGCAAGTGGTAAATGTGACCAAGACCTCATCGGATGTTACGAACTTTACCAT
AAACCTGGTGACGGTTGAAAACGGAGAGACAAATTTAACCATTCAGCTGTGGGATTCTGC
AGGTAGGCAAGAAAGACTCATTGAAGAAATAAAGAATGTCAGAGTCAGAGTGCTCAAACC
GAGACAAGACAACCTTTTCCGGGCCTCAAACCTTATGGACAGAAACATCCTAATGCTTTT
TCTACCAATGATACTGTTAAATAAATGTGCGTTCGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61876452|ref|XP_596405.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61876452|ref|XP_596405.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               463-582, - strand, RNAz p=0.688758

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               463-582, - strand, RNAz p=0.688758

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               423-873, gnl|bosTau2|chr14 (49844069-49843619)
               

               
               423-873, gnl|Hg17|chr8 (82769740-82769290)
               

               
               423-873, gnl|Mm7|chr3 (10343761-10343317)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               423-873, gnl|bosTau2|chr14 (49844069-49843619)
               

               
               423-873, gnl|Hg17|chr8 (82769740-82769290)
               

               
               423-873, gnl|Mm7|chr3 (10343761-10343317)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	423-873, gnl\|bosTau2\|chr14 (49844069-49843619)
	423-873, gnl\|Hg17\|chr8 (82769740-82769290)
	423-873, gnl\|Mm7\|chr3 (10343761-10343317)