Ss1.1-Pig4-TMW8029N17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGACAAGGAGTACATCAACGGGGACAAGTATTTCCAGCAGATTTTTGATTGTCCCCGG CTGAAGTTTTCTGAGATCCCCCAGCGCCTCACAGCTCTGCTGTTGCCCCCTGACCCCATT GTCATCAACCACGTCATCAGCGTGGACCCGTCGGACCAGAAGAAGACAGCGTGCTACGAC ATTGACGTGGAGGTAGAGGAGCCACTGAAGGGACAGATGAGCAGCTTCCTCCTGTCCACA GCCAACCAGCAGGAGATCAGCGCTCTGGACAGTAAGATCCACGAGACGATTGAATCCATA AACCAGCTCAAGATCCAGAGGGACTTCATGCTAAGCTTCTCCAGAGACCCCAAAGGCTAC ATCCAAGACCTCCTCCGCTCCCAGAGCCGGGACCTCAAGGTGATGACAGACGTGGCAGGC AACCCTGAGGAGGAGCGGCGGGCTGAGTTCTACCACCAGCCCTGGTCCCAGGAAGCTGTC AGCCGCTACTTCTACTGCAAGATCCAGCAGCGCAGGCAGGAGCTGGAGCAGTCGCTGGTT GTGCGCAACACCTAGGAGCCCTGGGCACGAGCGCTGCTGTGGGCCCCTGGGCCCCTGCCC TGTCACCTCGGGCACTGCCGTCACTCCTGATGCCTTGCGGCCGAGGTGGGGACCGGATTA AAGGTCATTCATCTGATGGCACTCGTGTGGTCACTGGCAACTGGGGAGGGAGGAGGAAGG GGCAGGCCGTGGGTCCCTCTGGGCAGTTCCTCACCCCTCCCGCAGAGCCGCCTCACTCCA TTTGCCCTAGACCTAAAAACGGTTTGGCAGAAGACACTTTTAATAACATTTTCTTATTAA AAAAAATACAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGACAAGGAGTACATCAACGGGGACAAGTATTTCCAGCAGATTTTTGATTGTCCCCGG CTGAAGTTTTCTGAGATCCCCCAGCGCCTCACAGCTCTGCTGTTGCCCCCTGACCCCATT GTCATCAACCACGTCATCAGCGTGGACCCGTCGGACCAGAAGAAGACAGCGTGCTACGAC ATTGACGTGGAGGTAGAGGAGCCACTGAAGGGACAGATGAGCAGCTTCCTCCTGTCCACA GCCAACCAGCAGGAGATCAGCGCTCTGGACAGTAAGATCCACGAGACGATTGAATCCATA AACCAGCTCAAGATCCAGAGGGACTTCATGCTAAGCTTCTCCAGAGACCCCAAAGGCTAC ATCCAAGACCTCCTCCGCTCCCAGAGCCGGGACCTCAAGGTGATGACAGACGTGGCAGGC AACCCTGAGGAGGAGCGGCGGGCTGAGTTCTACCACCAGCCCTGGTCCCAGGAAGCTGTC AGCCGCTACTTCTACTGCAAGATCCAGCAGCGCAGGCAGGAGCTGGAGCAGTCGCTGGTT GTGCGCAACACCTAGGAGCCCTGGGCACGAGCGCTGCTGTGGGCCCCTGGGCCCCTGCCC TGTCACCTCGGGCACTGCCGTCACTCCTGATGCCTTGCGGCCGAGGTGGGGACCGGATTA AAGGTCATTCATCTGATGGCACTCGTGTGGTCACTGGCAACTGGGGAGGGAGGAGGAAGG GGCAGGCCGTGGGTCCCTCTGGGCAGTTCCTCACCCCTCCCGCAGAGCCGCCTCACTCCA TTTGCCCTAGACCTAAAAACGGTTTGGCAGAAGACACTTTTAATAACATTTTCTTATTAA AAAAAATACAGC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 139-269, gnl|bosTau2|chr19 (40507845-40507715) | |
| 139-269, gnl|canFam2|chr9 (14914961-14915070) | |
| 139-269, gnl|danRer3|chr7 (36074305-36074196) | |
| 139-269, gnl|dasNov1|scaffold_11277 (7885-7994) | |
| 139-269, gnl|echTel1|scaffold_313474 (48474-48365) | |
| 139-269, gnl|fr1|chrUn (38981192-38981084) | |
| 139-269, gnl|galGal2|chr27 (213295-213404) | |
| 139-269, gnl|hg17|chr17 (59264678-59264787) | |
| 139-269, gnl|Hg17|chr17 (59264816-59264686) | |
| 139-269, gnl|loxAfr1|scaffold_4277 (46715-46607) | |
| 139-269, gnl|mm7|chr11 (106373712-106373821) | |
| 139-269, gnl|Mm7|chr11 (106373850-106373720) | |
| 139-269, gnl|monDom2|scaffold_18 (35672081-35671972) | |
| 139-269, gnl|oryCun1|scaffold_215464 (53517-53626) | |
| 139-269, gnl|panTro1|chr19 (45871198-45871089) | |
| 139-269, gnl|rheMac2|chr16 (59347142-59347251) | |
| 139-269, gnl|rn3|chr10 (95672873-95672982) | |
| 139-269, gnl|tetNig1|chr2 (5652075-5651967) | |
| 139-269, gnl|xenTro1|scaffold_58 (616096-615987) | |
| 275-402, gnl|bosTau2|chr19 (40507550-40507423) | |
| 275-402, gnl|canFam2|chr9 (14914658-14914790) | |
| 275-402, gnl|danRer3|chr7 (36074980-36074848) | |
| 275-402, gnl|dasNov1|scaffold_11277 (7574-7706) | |
| 275-402, gnl|echTel1|scaffold_313474 (48748-48616) | |
| 275-402, gnl|fr1|chrUn (38981399-38981272) | |
| 275-402, gnl|galGal2|chr27 (213021-213153) | |
| 275-402, gnl|hg17|chr17 (59264388-59264520) | |
| 275-402, gnl|Hg17|chr17 (59264514-59264387) | |
| 275-402, gnl|loxAfr1|scaffold_4277 (46992-46860) | |
| 275-402, gnl|mm7|chr11 (106373472-106373604) | |
| 275-402, gnl|Mm7|chr11 (106373598-106373471) | |
| 275-402, gnl|monDom2|scaffold_18 (35672358-35672226) | |
| 275-402, gnl|oryCun1|scaffold_215464 (53220-53350) | |
| 275-402, gnl|panTro1|chr19 (45871488-45871356) | |
| 275-402, gnl|rheMac2|chr16 (59346852-59346984) | |
| 275-402, gnl|rn3|chr10 (95672599-95672730) | |
| 275-402, gnl|tetNig1|chr2 (5652280-5652153) | |
| 275-402, gnl|xenTro1|scaffold_58 (616329-616198) | |
| 500-846, gnl|bosTau2|chr4 (64357647-64358010) | |
| 500-846, gnl|Hg17|chr7 (150373892-150373514) | |
| 500-846, gnl|Mm7|chr5 (23633299-23632938) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 139-269, gnl|bosTau2|chr19 (40507845-40507715) | |
| 139-269, gnl|canFam2|chr9 (14914961-14915070) | |
| 139-269, gnl|danRer3|chr7 (36074305-36074196) | |
| 139-269, gnl|dasNov1|scaffold_11277 (7885-7994) | |
| 139-269, gnl|echTel1|scaffold_313474 (48474-48365) | |
| 139-269, gnl|fr1|chrUn (38981192-38981084) | |
| 139-269, gnl|galGal2|chr27 (213295-213404) | |
| 139-269, gnl|hg17|chr17 (59264678-59264787) | |
| 139-269, gnl|Hg17|chr17 (59264816-59264686) | |
| 139-269, gnl|loxAfr1|scaffold_4277 (46715-46607) | |
| 139-269, gnl|mm7|chr11 (106373712-106373821) | |
| 139-269, gnl|Mm7|chr11 (106373850-106373720) | |
| 139-269, gnl|monDom2|scaffold_18 (35672081-35671972) | |
| 139-269, gnl|oryCun1|scaffold_215464 (53517-53626) | |
| 139-269, gnl|panTro1|chr19 (45871198-45871089) | |
| 139-269, gnl|rheMac2|chr16 (59347142-59347251) | |
| 139-269, gnl|rn3|chr10 (95672873-95672982) | |
| 139-269, gnl|tetNig1|chr2 (5652075-5651967) | |
| 139-269, gnl|xenTro1|scaffold_58 (616096-615987) | |
| 275-402, gnl|bosTau2|chr19 (40507550-40507423) | |
| 275-402, gnl|canFam2|chr9 (14914658-14914790) | |
| 275-402, gnl|danRer3|chr7 (36074980-36074848) | |
| 275-402, gnl|dasNov1|scaffold_11277 (7574-7706) | |
| 275-402, gnl|echTel1|scaffold_313474 (48748-48616) | |
| 275-402, gnl|fr1|chrUn (38981399-38981272) | |
| 275-402, gnl|galGal2|chr27 (213021-213153) | |
| 275-402, gnl|hg17|chr17 (59264388-59264520) | |
| 275-402, gnl|Hg17|chr17 (59264514-59264387) | |
| 275-402, gnl|loxAfr1|scaffold_4277 (46992-46860) | |
| 275-402, gnl|mm7|chr11 (106373472-106373604) | |
| 275-402, gnl|Mm7|chr11 (106373598-106373471) | |
| 275-402, gnl|monDom2|scaffold_18 (35672358-35672226) | |
| 275-402, gnl|oryCun1|scaffold_215464 (53220-53350) | |
| 275-402, gnl|panTro1|chr19 (45871488-45871356) | |
| 275-402, gnl|rheMac2|chr16 (59346852-59346984) | |
| 275-402, gnl|rn3|chr10 (95672599-95672730) | |
| 275-402, gnl|tetNig1|chr2 (5652280-5652153) | |
| 275-402, gnl|xenTro1|scaffold_58 (616329-616198) | |
| 500-846, gnl|bosTau2|chr4 (64357647-64358010) | |
| 500-846, gnl|Hg17|chr7 (150373892-150373514) | |
| 500-846, gnl|Mm7|chr5 (23633299-23632938) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| fhi (0.339155) | |
| hlv (0.278513) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jca (0.11396) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fhi (0.339155) | |
| hlv (0.278513) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| fbs (0.175346) | |
| hyp (0.142837) | |
| cst (0.140036) | |
| che (0.136314) | |
| nmm (0.132802) | |
| cov (0.132153) | |
| ese (0.126502) | |
| eru (0.120048) | |
| jca (0.11396) |