Non-Coding RNA Search

Ss1.1-Pig4-TMW8029N18.3

Sequence:


               
               AGAGCCCGGCCGGGGCGATGTGGAGCGCGGGTTGCCGGCGAGCTGCCGGACCGGCGCTGC
TGGGGCTGCTGCTAGCGCTCTTGGTGCCGGGCAGCGGTGCCGCCAAGACCGGCTCGGGCC
TCGTGACCTGTGGGTCGGTGCTGAAGCTGCTCAACACGCAGCACCGGGTGCGGCTGCATT
CGCACGACATCAAATACGGATCCGGTGCGCGGGCTGGTTGCCGGCGAGCTGCCGGACCGG
CGCTGCTGGGGCTGCTGCTAGCGCTCTTGGTGCCGGGCAGCGGTGCCGCCAAGACCGGCT
CGGGCCTCGTGACCTGTGGGTCGGTGCTGAAGCTGCTCAACACGCAGCACCGGGTGCGGC
TGCATTCGCACGACATCAAATACGGATCCGGCAGCGGCCAGCAGTCGGTGACCGGCGTGG
AGGCGTCCGACGACGCCAACAGCTACTGGCAAATCCGCGGCGGCTCGGAGGGCGGGTGTC
CGCGCGGGTCTCCGGTGCGCTGCGGGCAGGCGGTTCGGCTGACTCACGTGCTCACCGGCA
AGAACCTGCACACGCACCACTTCCCTTCGCCGCTGTCCAACAACCAGGAGGTGAGCGCCT
TTGGGGAGGATGGCGAGGGTGATGACCTGGACCTGTGGACAGTGCGCTGCTCAGGGCAGC
ACTGGGAGCGGGAGGCTGCAGTGCGCTTCCAGCACGTGGGCACCTCTGTGTTCCTTTCGG
TCACCGGTGAGCAATACGGGAGTCCCATCCGTGGGCAACACGAGGTGCACGGCATGCCCA
GCGCCAACACTCACAATAGGTGGAAGGCCATGGAAGGCATCTTCATCAAGCCCAGCATGG
ACCCCTCTGCAGGTCATGATGAACTCTGAGTGCTCTGGATGGGTGGATGGAGGGCAGAAG
GATGGGTTGACTGCAGACCCACTCTTGGGGGAAACTTTGGGTTTGTAGGGATTCTTAAGT
GCCTTTATGATTAAAGAATGTTGGTCTAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAGCCCGGCCGGGGCGATGTGGAGCGCGGGTTGCCGGCGAGCTGCCGGACCGGCGCTGC
TGGGGCTGCTGCTAGCGCTCTTGGTGCCGGGCAGCGGTGCCGCCAAGACCGGCTCGGGCC
TCGTGACCTGTGGGTCGGTGCTGAAGCTGCTCAACACGCAGCACCGGGTGCGGCTGCATT
CGCACGACATCAAATACGGATCCGGTGCGCGGGCTGGTTGCCGGCGAGCTGCCGGACCGG
CGCTGCTGGGGCTGCTGCTAGCGCTCTTGGTGCCGGGCAGCGGTGCCGCCAAGACCGGCT
CGGGCCTCGTGACCTGTGGGTCGGTGCTGAAGCTGCTCAACACGCAGCACCGGGTGCGGC
TGCATTCGCACGACATCAAATACGGATCCGGCAGCGGCCAGCAGTCGGTGACCGGCGTGG
AGGCGTCCGACGACGCCAACAGCTACTGGCAAATCCGCGGCGGCTCGGAGGGCGGGTGTC
CGCGCGGGTCTCCGGTGCGCTGCGGGCAGGCGGTTCGGCTGACTCACGTGCTCACCGGCA
AGAACCTGCACACGCACCACTTCCCTTCGCCGCTGTCCAACAACCAGGAGGTGAGCGCCT
TTGGGGAGGATGGCGAGGGTGATGACCTGGACCTGTGGACAGTGCGCTGCTCAGGGCAGC
ACTGGGAGCGGGAGGCTGCAGTGCGCTTCCAGCACGTGGGCACCTCTGTGTTCCTTTCGG
TCACCGGTGAGCAATACGGGAGTCCCATCCGTGGGCAACACGAGGTGCACGGCATGCCCA
GCGCCAACACTCACAATAGGTGGAAGGCCATGGAAGGCATCTTCATCAAGCCCAGCATGG
ACCCCTCTGCAGGTCATGATGAACTCTGAGTGCTCTGGATGGGTGGATGGAGGGCAGAAG
GATGGGTTGACTGCAGACCCACTCTTGGGGGAAACTTTGGGTTTGTAGGGATTCTTAAGT
GCCTTTATGATTAAAGAATGTTGGTCTAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SDF2L_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               SDF2L_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               744-863, + strand, RNAz p=0.742811

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               744-863, + strand, RNAz p=0.742811

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-257, gnl|bosTau2|chr17 (45428286-45428536)
               

               
               2-257, gnl|Hg17|chr22 (20321164-20321412)
               

               
               2-257, gnl|Mm7|chr16 (16682063-16681805)
               


               
               585-987, gnl|bosTau2|chr17 (45429766-45430167)
               

               
               585-987, gnl|Hg17|chr22 (20322734-20323138)
               

               
               585-987, gnl|Mm7|chr16 (16680522-16680128)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-257, gnl|bosTau2|chr17 (45428286-45428536)
               

               
               2-257, gnl|Hg17|chr22 (20321164-20321412)
               

               
               2-257, gnl|Mm7|chr16 (16682063-16681805)
               


               
               585-987, gnl|bosTau2|chr17 (45429766-45430167)
               

               
               585-987, gnl|Hg17|chr22 (20322734-20323138)
               

               
               585-987, gnl|Mm7|chr16 (16680522-16680128)

Expressed library(ies): 15 entry(ies)

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Expressed library(ies): 15 entry(ies)

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               cje (0.660939)
               

               
               cte (0.58548)
               

               
               cst (0.560146)
               

               
               lun (0.300978)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csk (0.140746)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.660939)
               

               
               cte (0.58548)
               

               
               cst (0.560146)
               

               
               lun (0.300978)
               

               
               fce (0.271592)
               

               
               pgl (0.236967)
               

               
               tes (0.207814)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               fhi (0.169578)
               

               
               cki (0.165235)
               

               
               csk (0.140746)
               

               
               cov (0.132153)
               

               
               sug (0.127291)
               

               
               jej (0.0989218)

	2-257, gnl\|bosTau2\|chr17 (45428286-45428536)
	2-257, gnl\|Hg17\|chr22 (20321164-20321412)
	2-257, gnl\|Mm7\|chr16 (16682063-16681805)

	585-987, gnl\|bosTau2\|chr17 (45429766-45430167)
	585-987, gnl\|Hg17\|chr22 (20322734-20323138)
	585-987, gnl\|Mm7\|chr16 (16680522-16680128)

	cje (0.660939)
	cte (0.58548)
	cst (0.560146)
	lun (0.300978)
	fce (0.271592)
	pgl (0.236967)
	tes (0.207814)
	col (0.195008)
	sto (0.179824)
	fhi (0.169578)
	cki (0.165235)
	csk (0.140746)
	cov (0.132153)
	sug (0.127291)
	jej (0.0989218)