Non-Coding RNA Search

Ss1.1-Pig4-TMW8029N19.3

Sequence:


               
               AGGGGTTGAATTGGAGCTGTAGCTGCCAGCCTGCACCACAGACGCAGCAATGCCAGATCT
GAGCTGCATCTGCGACCTACACCACAGCTCACGGCAATGCCGGATCCTTAACCCACGGAG
CAAGGCCAGGGATCGAACCTGTGTCCTCATGGATGCTAGTCAGATTTGTTTCCACTGAGC
CACGACAGGAACTCTGGAAGCTGATGTTTTAGAAAACACCCAAATTTAATTGATAGCAGG
GTTGGATATGAGAGCTGGGTTGGGTTGGATTTTAGAAAGGACAAGAGTTCTGGTTTTTTT
TTTTTTTATTTCAGAAATAAATGTAGTCTTTTCTCTATTATTATATTTTTTTGTGTTTTT
TTTTTCCTTCATTTTTTTATGTGTTATTGCAGTAGAGTTCTGAATTTTGGTTAGTGAGGC
GATAGCCATCACTGGTGTGGGAGGGGTCATGCTTCAGGAAATCTCTGCCGGGGAGCGGGG
GTGACTCATGGGACGCCAGAGTTGAGGCATCAGGTAGAGGGCAGGAGTGGTGGCTGGGTG
CTCCCCTTGCCCCTGCGCAGCTGCGCCCCCGCCCTGTGTTGTCCAGGCTCCTAAGCAGAG
CAGGCTTGCTCTCCTCCCCTCGCCTCCTGGGTGGCCCGTCCGCCTGAGAACCCTCGTCAG
CCAGGGAGCCGGGGCGCGGGCGGCCTTCATCTGCACCTGTGTCTCTCTCAGCCTCTGCAG
CCACGGGGACACCTGCACACGTTCCCAAAGACTCTGGACCTGGGCGGCCCCCTGCGAGGA
GGGGCGTGTCCTCCCCGCCACCCCTGGGTGGCCGCCCGCCCTCTGACTGGTGGACTTCGC
TGATCTGAGTGTCAGACCCACGGGCTTGACCCCTACCCAACCCCTCCTGAACCCTGAGAC
GTGGGAGCGCCGCGCCTCGCCGTCCGCATCTGTGAAATGGGCGCAGACCCCTACCTCACA
GGGCTGTTGTGAGGCGCGTGTGACGCGGTTTGGAAGTGCCCCACCTGGGGGCTTGGCACA
GCCATTGTGCTCTCAATAAATGTGTTTCTTGCCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGGTTGAATTGGAGCTGTAGCTGCCAGCCTGCACCACAGACGCAGCAATGCCAGATCT
GAGCTGCATCTGCGACCTACACCACAGCTCACGGCAATGCCGGATCCTTAACCCACGGAG
CAAGGCCAGGGATCGAACCTGTGTCCTCATGGATGCTAGTCAGATTTGTTTCCACTGAGC
CACGACAGGAACTCTGGAAGCTGATGTTTTAGAAAACACCCAAATTTAATTGATAGCAGG
GTTGGATATGAGAGCTGGGTTGGGTTGGATTTTAGAAAGGACAAGAGTTCTGGTTTTTTT
TTTTTTTATTTCAGAAATAAATGTAGTCTTTTCTCTATTATTATATTTTTTTGTGTTTTT
TTTTTCCTTCATTTTTTTATGTGTTATTGCAGTAGAGTTCTGAATTTTGGTTAGTGAGGC
GATAGCCATCACTGGTGTGGGAGGGGTCATGCTTCAGGAAATCTCTGCCGGGGAGCGGGG
GTGACTCATGGGACGCCAGAGTTGAGGCATCAGGTAGAGGGCAGGAGTGGTGGCTGGGTG
CTCCCCTTGCCCCTGCGCAGCTGCGCCCCCGCCCTGTGTTGTCCAGGCTCCTAAGCAGAG
CAGGCTTGCTCTCCTCCCCTCGCCTCCTGGGTGGCCCGTCCGCCTGAGAACCCTCGTCAG
CCAGGGAGCCGGGGCGCGGGCGGCCTTCATCTGCACCTGTGTCTCTCTCAGCCTCTGCAG
CCACGGGGACACCTGCACACGTTCCCAAAGACTCTGGACCTGGGCGGCCCCCTGCGAGGA
GGGGCGTGTCCTCCCCGCCACCCCTGGGTGGCCGCCCGCCCTCTGACTGGTGGACTTCGC
TGATCTGAGTGTCAGACCCACGGGCTTGACCCCTACCCAACCCCTCCTGAACCCTGAGAC
GTGGGAGCGCCGCGCCTCGCCGTCCGCATCTGTGAAATGGGCGCAGACCCCTACCTCACA
GGGCTGTTGTGAGGCGCGTGTGACGCGGTTTGGAAGTGCCCCACCTGGGGGCTTGGCACA
GCCATTGTGCTCTCAATAAATGTGTTTCTTGCCTTA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               757-874, - strand, RNAz p=0.663388
               

               
               951-1056, - strand, RNAz p=0.575287

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               757-874, - strand, RNAz p=0.663388
               

               
               951-1056, - strand, RNAz p=0.575287

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               1018-1105, + strand, RNAmicro p=0.993912
               

               
               733-864, - strand, RNAmicro p=0.989895

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               1018-1105, + strand, RNAmicro p=0.993912
               

               
               733-864, - strand, RNAmicro p=0.989895

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               562-1056, gnl|bosTau2|chr21 (45999953-46000468)
               

               
               562-1056, gnl|canFam2|chr8 (72128850-72129457)
               

               
               562-1056, gnl|hg17|chr14 (100396584-100397118)
               

               
               562-1056, gnl|Hg17|chr14 (100396628-100397109)
               

               
               562-1056, gnl|mm7|chr12 (107092461-107092960)
               

               
               562-1056, gnl|Mm7|chr12 (107092446-107092949)
               

               
               562-1056, gnl|panTro1|chr15 (100954704-100955238)
               

               
               562-1056, gnl|rheMac2|chr7 (164143213-164143747)
               

               
               562-1056, gnl|rn3|chr6 (134155190-134155718)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               562-1056, gnl|bosTau2|chr21 (45999953-46000468)
               

               
               562-1056, gnl|canFam2|chr8 (72128850-72129457)
               

               
               562-1056, gnl|hg17|chr14 (100396584-100397118)
               

               
               562-1056, gnl|Hg17|chr14 (100396628-100397109)
               

               
               562-1056, gnl|mm7|chr12 (107092461-107092960)
               

               
               562-1056, gnl|Mm7|chr12 (107092446-107092949)
               

               
               562-1056, gnl|panTro1|chr15 (100954704-100955238)
               

               
               562-1056, gnl|rheMac2|chr7 (164143213-164143747)
               

               
               562-1056, gnl|rn3|chr6 (134155190-134155718)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               ese (0.379507)
               

               
               ebs (0.354904)
               

               
               eye (0.341006)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ese (0.379507)
               

               
               ebs (0.354904)
               

               
               eye (0.341006)
               

               
               nms (0.213858)
               

               
               fcc (0.197785)
               

               
               cbr (0.127975)
               

               
               eep (0.122564)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	757-874, - strand, RNAz p=0.663388
	951-1056, - strand, RNAz p=0.575287

	1018-1105, + strand, RNAmicro p=0.993912
	733-864, - strand, RNAmicro p=0.989895

	562-1056, gnl\|bosTau2\|chr21 (45999953-46000468)
	562-1056, gnl\|canFam2\|chr8 (72128850-72129457)
	562-1056, gnl\|hg17\|chr14 (100396584-100397118)
	562-1056, gnl\|Hg17\|chr14 (100396628-100397109)
	562-1056, gnl\|mm7\|chr12 (107092461-107092960)
	562-1056, gnl\|Mm7\|chr12 (107092446-107092949)
	562-1056, gnl\|panTro1\|chr15 (100954704-100955238)
	562-1056, gnl\|rheMac2\|chr7 (164143213-164143747)
	562-1056, gnl\|rn3\|chr6 (134155190-134155718)

	ese (0.379507)
	ebs (0.354904)
	eye (0.341006)
	nms (0.213858)
	fcc (0.197785)
	cbr (0.127975)
	eep (0.122564)
	eru (0.120048)
	ecc (0.115035)
	jca (0.11396)