Ss1.1-Pig4-TMW8029N24.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGCCGCTCTCTTCTGGAAAGAGGGGAAAGGAAGACCGCAGAGATGAATGAACGCTTGC AGAAAATGGGAGAGTCTTCTCTGAGAAATTTTAGAATGGACACTGAACAAAGTTTGTACA AGTTTGAAGGAGAAGATTATAGAGAAAAACAGAAGCTTGGAATGGTGGAATGGATTGAAC CTCCCAAACGAGAACGCAAAGCAAACTATGCGGTGGATGCCTACTTCAGAGAGGCATTAC GTGTCAGCGAGCCAAAGGTGCCAAAGGCTCCACGACCTCCAAAACAGCCAAATGTTCAAG ATTTTCAGTTTTTTCCACCACGCTTATTCGAGCTCCTCGAAAAGGAAATTCTTTATTATA GGAAGACAATAGGCTATAAGGTCCCAAGGAATCCTGACATCCCCAATCCAGCTGTGGCTC AAAGAGAGGAGCAAAAAAAGATTGATGGAGCTGAACCTCTTACACCAGAAGAGACTGAAG AAAAGGAAAAACTTCTCACACAAGGATTCACCAACTGGACTAAGCGAGATTTTAACCAGT TTATTAAAGCTAATGAGAAGTACGGAAGAGATGACATTGATAACATAGCTCGAGAGGTGG AGGGCAAATCCCCTGAGGAGGTCATGGAGTATTCAGCTGTGTTTTGGGAACGTTGCAATG AATTACAGGACATTGAGAAAATTATGGCTCAAATTGAACGCGGAGAAGCAAGAATTCAAC GAAGGATCAGTATCAAGAAAGCCCTGGATGCCAAAATTGCAAGGTACAAGGCTCCATTTC ATCAGTTACGTATTCAGTACGGAACCAGCAAAGGAAAGAACTATACTGAGGAAGAAGATA GATTCTTGATTTGTATGTTACACAAAATGGGCTTTGATAGAGAAAACGTGTATGAAGAAT TAAGACAGTGTGTTCGGAATGCTCCTCAGTTTAGATTTGACTGGTTTATCAAGTCTAGAA CTGCCATGGAATTCCAGAGACGCTGTAATACTCTGATTTCATTGATTGAAAAAGAAAATA TGGAAATTGAGGAAAGAGAAAGAGCAGAAAAGAAGAAACGGGCAACTAAAACTCCAATGT CACAGAAAAGAAAAGCAGAGTCAGCTACTGAGAGCTCTGGAAAGAAGGATGTCAAGAAGG TGAAATCCTAAAGCCTAGAAATAAAGTTTTAAATGGGAAACTGCTATTTTCTTGTTCCCA TCTTCAAATGCTAATTGCCAGTTCCAGTGTATTCATGGTACTCTAAGAAAAATCTCTTTG GTTTTGATTTCTTGCATATTTTATATATTTTACGATGCTTTCTACCTGAAATGTGTAGCT TTATATTTTATGCATTCTAGTATTTTTGTGTACTGTATTTTGTGCATTTCATGTCTTCAT CAAAATTCTCTCAGTCCTTGTTCTTTTGAAGCTTGTGCTGAGGTTTTAGCTTTTCTATGT TTTATATGCCGCTGCTTTGAAAGAGAACCTAGATTCTATAGCTGTATTATTGTTGTTTCA TACTTTAAATTTATATGGCTGTGGAAAAATGAATTAAAATGATTTGAGGAGAAAGACTTT TTCACTTCTTTGTTGCTTTCTTTTCTATTGAGTATGGGCTTGTACGTGTTACTGCATACT GTGATTAGCATAATAATTGTTTCTTTGAGGTCATCTAAATATTTTTTTCCTAAAGGAATA AAGGGTGAGAACAGAAAAATATTAAAAAAAACCTAATATTTGATACTGTGCTTGCTGTCA GTATGCATTACAGTTAAATTATTCTCTAAATATTCAAGTGGGAAAATATAATAAAGAAAC GTCTATAAGAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGCCGCTCTCTTCTGGAAAGAGGGGAAAGGAAGACCGCAGAGATGAATGAACGCTTGC AGAAAATGGGAGAGTCTTCTCTGAGAAATTTTAGAATGGACACTGAACAAAGTTTGTACA AGTTTGAAGGAGAAGATTATAGAGAAAAACAGAAGCTTGGAATGGTGGAATGGATTGAAC CTCCCAAACGAGAACGCAAAGCAAACTATGCGGTGGATGCCTACTTCAGAGAGGCATTAC GTGTCAGCGAGCCAAAGGTGCCAAAGGCTCCACGACCTCCAAAACAGCCAAATGTTCAAG ATTTTCAGTTTTTTCCACCACGCTTATTCGAGCTCCTCGAAAAGGAAATTCTTTATTATA GGAAGACAATAGGCTATAAGGTCCCAAGGAATCCTGACATCCCCAATCCAGCTGTGGCTC AAAGAGAGGAGCAAAAAAAGATTGATGGAGCTGAACCTCTTACACCAGAAGAGACTGAAG AAAAGGAAAAACTTCTCACACAAGGATTCACCAACTGGACTAAGCGAGATTTTAACCAGT TTATTAAAGCTAATGAGAAGTACGGAAGAGATGACATTGATAACATAGCTCGAGAGGTGG AGGGCAAATCCCCTGAGGAGGTCATGGAGTATTCAGCTGTGTTTTGGGAACGTTGCAATG AATTACAGGACATTGAGAAAATTATGGCTCAAATTGAACGCGGAGAAGCAAGAATTCAAC GAAGGATCAGTATCAAGAAAGCCCTGGATGCCAAAATTGCAAGGTACAAGGCTCCATTTC ATCAGTTACGTATTCAGTACGGAACCAGCAAAGGAAAGAACTATACTGAGGAAGAAGATA GATTCTTGATTTGTATGTTACACAAAATGGGCTTTGATAGAGAAAACGTGTATGAAGAAT TAAGACAGTGTGTTCGGAATGCTCCTCAGTTTAGATTTGACTGGTTTATCAAGTCTAGAA CTGCCATGGAATTCCAGAGACGCTGTAATACTCTGATTTCATTGATTGAAAAAGAAAATA TGGAAATTGAGGAAAGAGAAAGAGCAGAAAAGAAGAAACGGGCAACTAAAACTCCAATGT CACAGAAAAGAAAAGCAGAGTCAGCTACTGAGAGCTCTGGAAAGAAGGATGTCAAGAAGG TGAAATCCTAAAGCCTAGAAATAAAGTTTTAAATGGGAAACTGCTATTTTCTTGTTCCCA TCTTCAAATGCTAATTGCCAGTTCCAGTGTATTCATGGTACTCTAAGAAAAATCTCTTTG GTTTTGATTTCTTGCATATTTTATATATTTTACGATGCTTTCTACCTGAAATGTGTAGCT TTATATTTTATGCATTCTAGTATTTTTGTGTACTGTATTTTGTGCATTTCATGTCTTCAT CAAAATTCTCTCAGTCCTTGTTCTTTTGAAGCTTGTGCTGAGGTTTTAGCTTTTCTATGT TTTATATGCCGCTGCTTTGAAAGAGAACCTAGATTCTATAGCTGTATTATTGTTGTTTCA TACTTTAAATTTATATGGCTGTGGAAAAATGAATTAAAATGATTTGAGGAGAAAGACTTT TTCACTTCTTTGTTGCTTTCTTTTCTATTGAGTATGGGCTTGTACGTGTTACTGCATACT GTGATTAGCATAATAATTGTTTCTTTGAGGTCATCTAAATATTTTTTTCCTAAAGGAATA AAGGGTGAGAACAGAAAAATATTAAAAAAAACCTAATATTTGATACTGTGCTTGCTGTCA GTATGCATTACAGTTAAATTATTCTCTAAATATTCAAGTGGGAAAATATAATAAAGAAAC GTCTATAAGAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 34-155, gnl|bosTau2|chrX (3807369-3807248) | |
| 34-155, gnl|canFam2|chrX (103769650-103769782) | |
| 34-155, gnl|danRer3|chr5 (8452995-8452855) | |
| 34-155, gnl|dasNov1|scaffold_3930 (36220-36352) | |
| 34-155, gnl|echTel1|scaffold_325388 (9364-9232) | |
| 34-155, gnl|fr1|chrUn (164896439-164896571) | |
| 34-155, gnl|galGal2|chr4 (14074157-14074025) | |
| 34-155, gnl|hg17|chrX (128346523-128346655) | |
| 34-155, gnl|Hg17|chrX (128346651-128346530) | |
| 34-155, gnl|loxAfr1|scaffold_3170 (4952-5084) | |
| 34-155, gnl|mm7|chrX (42942163-42942293) | |
| 34-155, gnl|Mm7|chrX (42942289-42942168) | |
| 34-155, gnl|monDom2|scaffold_126 (2031477-2031617) | |
| 34-155, gnl|panTro1|chrX (132577737-132577869) | |
| 34-155, gnl|rheMac2|chrX (127722832-127722964) | |
| 34-155, gnl|rn3|chrX (134288366-134288498) | |
| 34-155, gnl|xenTro1|scaffold_224 (956265-956398) | |
| 261-382, gnl|bosTau2|chrX (3800875-3800754) | |
| 261-382, gnl|canFam2|chrX (103763822-103763960) | |
| 261-382, gnl|danRer3|chr5 (8458439-8458312) | |
| 261-382, gnl|dasNov1|scaffold_17140 (13820-13964) | |
| 261-382, gnl|echTel1|scaffold_325388 (15142-15005) | |
| 261-382, gnl|fr1|chrUn (164896038-164896166) | |
| 261-382, gnl|galGal2|chr4 (14075116-14074973) | |
| 261-382, gnl|hg17|chrX (128340204-128340345) | |
| 261-382, gnl|Hg17|chrX (128340332-128340211) | |
| 261-382, gnl|loxAfr1|scaffold_52557 (6339-6220) | |
| 261-382, gnl|mm7|chrX (42933780-42933919) | |
| 261-382, gnl|Mm7|chrX (42933908-42933787) | |
| 261-382, gnl|monDom2|scaffold_126 (2025511-2025648) | |
| 261-382, gnl|oryCun1|scaffold_84172 (7513-7652) | |
| 261-382, gnl|panTro1|chrX (132571297-132571438) | |
| 261-382, gnl|rheMac2|chrX (127717166-127717305) | |
| 261-382, gnl|rn3|chrX (134279545-134279684) | |
| 261-382, gnl|tetNig1|chr18 (6789696-6789577) | |
| 261-382, gnl|xenTro1|scaffold_224 (952063-952207) | |
| 499-642, gnl|bosTau2|chrX (3789035-3788892) | |
| 499-642, gnl|Hg17|chrX (128328422-128328280) | |
| 499-642, gnl|Mm7|chrX (42918882-42918740) | |
| 756-972, gnl|bosTau2|chrX (3786234-3786018) | |
| 756-972, gnl|canFam2|chrX (103748477-103748661) | |
| 756-972, gnl|danRer3|chr5 (8461514-8461233) | |
| 756-972, gnl|dasNov1|scaffold_113280 (256-72) | |
| 756-972, gnl|echTel1|scaffold_682 (744-928) | |
| 756-972, gnl|fr1|chrUn (164895096-164895282) | |
| 756-972, gnl|galGal2|chr4 (14080824-14080647) | |
| 756-972, gnl|hg17|chrX (128325016-128325200) | |
| 756-972, gnl|Hg17|chrX (128325244-128325028) | |
| 756-972, gnl|loxAfr1|scaffold_29027 (21333-21517) | |
| 756-972, gnl|mm7|chrX (42915600-42915785) | |
| 756-972, gnl|Mm7|chrX (42915829-42915613) | |
| 756-972, gnl|monDom2|scaffold_126 (2002059-2002236) | |
| 756-972, gnl|oryCun1|scaffold_207913 (19680-19849) | |
| 756-972, gnl|panTro1|chrX (132555816-132556000) | |
| 756-972, gnl|rheMac2|chrX (127701740-127701924) | |
| 756-972, gnl|rn3|chrX (134264780-134264965) | |
| 756-972, gnl|tetNig1|chr18 (6790614-6790444) | |
| 756-972, gnl|xenTro1|scaffold_224 (939179-939363) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 34-155, gnl|bosTau2|chrX (3807369-3807248) | |
| 34-155, gnl|canFam2|chrX (103769650-103769782) | |
| 34-155, gnl|danRer3|chr5 (8452995-8452855) | |
| 34-155, gnl|dasNov1|scaffold_3930 (36220-36352) | |
| 34-155, gnl|echTel1|scaffold_325388 (9364-9232) | |
| 34-155, gnl|fr1|chrUn (164896439-164896571) | |
| 34-155, gnl|galGal2|chr4 (14074157-14074025) | |
| 34-155, gnl|hg17|chrX (128346523-128346655) | |
| 34-155, gnl|Hg17|chrX (128346651-128346530) | |
| 34-155, gnl|loxAfr1|scaffold_3170 (4952-5084) | |
| 34-155, gnl|mm7|chrX (42942163-42942293) | |
| 34-155, gnl|Mm7|chrX (42942289-42942168) | |
| 34-155, gnl|monDom2|scaffold_126 (2031477-2031617) | |
| 34-155, gnl|panTro1|chrX (132577737-132577869) | |
| 34-155, gnl|rheMac2|chrX (127722832-127722964) | |
| 34-155, gnl|rn3|chrX (134288366-134288498) | |
| 34-155, gnl|xenTro1|scaffold_224 (956265-956398) | |
| 261-382, gnl|bosTau2|chrX (3800875-3800754) | |
| 261-382, gnl|canFam2|chrX (103763822-103763960) | |
| 261-382, gnl|danRer3|chr5 (8458439-8458312) | |
| 261-382, gnl|dasNov1|scaffold_17140 (13820-13964) | |
| 261-382, gnl|echTel1|scaffold_325388 (15142-15005) | |
| 261-382, gnl|fr1|chrUn (164896038-164896166) | |
| 261-382, gnl|galGal2|chr4 (14075116-14074973) | |
| 261-382, gnl|hg17|chrX (128340204-128340345) | |
| 261-382, gnl|Hg17|chrX (128340332-128340211) | |
| 261-382, gnl|loxAfr1|scaffold_52557 (6339-6220) | |
| 261-382, gnl|mm7|chrX (42933780-42933919) | |
| 261-382, gnl|Mm7|chrX (42933908-42933787) | |
| 261-382, gnl|monDom2|scaffold_126 (2025511-2025648) | |
| 261-382, gnl|oryCun1|scaffold_84172 (7513-7652) | |
| 261-382, gnl|panTro1|chrX (132571297-132571438) | |
| 261-382, gnl|rheMac2|chrX (127717166-127717305) | |
| 261-382, gnl|rn3|chrX (134279545-134279684) | |
| 261-382, gnl|tetNig1|chr18 (6789696-6789577) | |
| 261-382, gnl|xenTro1|scaffold_224 (952063-952207) | |
| 499-642, gnl|bosTau2|chrX (3789035-3788892) | |
| 499-642, gnl|Hg17|chrX (128328422-128328280) | |
| 499-642, gnl|Mm7|chrX (42918882-42918740) | |
| 756-972, gnl|bosTau2|chrX (3786234-3786018) | |
| 756-972, gnl|canFam2|chrX (103748477-103748661) | |
| 756-972, gnl|danRer3|chr5 (8461514-8461233) | |
| 756-972, gnl|dasNov1|scaffold_113280 (256-72) | |
| 756-972, gnl|echTel1|scaffold_682 (744-928) | |
| 756-972, gnl|fr1|chrUn (164895096-164895282) | |
| 756-972, gnl|galGal2|chr4 (14080824-14080647) | |
| 756-972, gnl|hg17|chrX (128325016-128325200) | |
| 756-972, gnl|Hg17|chrX (128325244-128325028) | |
| 756-972, gnl|loxAfr1|scaffold_29027 (21333-21517) | |
| 756-972, gnl|mm7|chrX (42915600-42915785) | |
| 756-972, gnl|Mm7|chrX (42915829-42915613) | |
| 756-972, gnl|monDom2|scaffold_126 (2002059-2002236) | |
| 756-972, gnl|oryCun1|scaffold_207913 (19680-19849) | |
| 756-972, gnl|panTro1|chrX (132555816-132556000) | |
| 756-972, gnl|rheMac2|chrX (127701740-127701924) | |
| 756-972, gnl|rn3|chrX (134264780-134264965) | |
| 756-972, gnl|tetNig1|chr18 (6790614-6790444) | |
| 756-972, gnl|xenTro1|scaffold_224 (939179-939363) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| fco (0.628832) | |
| fat (0.442282) | |
| tes (0.415628) | |
| elu (0.385356) | |
| pla (0.267344) | |
| aor (0.195274) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| liv (0.146284) | |
| spl (0.143184) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fco (0.628832) | |
| fat (0.442282) | |
| tes (0.415628) | |
| elu (0.385356) | |
| pla (0.267344) | |
| aor (0.195274) | |
| sin (0.174948) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| fhi (0.169578) | |
| liv (0.146284) | |
| spl (0.143184) | |
| ova (0.129132) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| eje (0.0988338) |