Non-Coding RNA Search

Ss1.1-Pig4-TMW8029O03.3

Sequence:


               
               AAACTGTTGGAAAATATGGATATATGTACATCTGTACATGTATATAGTGTATAATATGTA
TGTATATGTTATGGCTCATATGCAGAAATCTATCCATTTGAAGACAGTCCAGGTGGGTCA
GTTTTTCTATTAGAAAACCATTGAGAGCCATTCAAAACCATTAGGGCTGATGGGGAGAGT
TAGATTCTACTCATTGGGGAATTATTTGCTGTATTCTGAAGTCTACAAAGCTTGAAACAT
AATGTGGCCATCATTTAAGTTATTCTGTTTACCTGGAGTCAGAAGAATCTTTGTTTGAAT
TAATAATTGTTGGTTTGCGAACTTCATTGGCACCCCTTAGTTTTGAGTGACCCCTCCCCA
CCAAGTCTTTTGAGAGTGTGGGCTTCTCTGACCATTCAGATAAAGGGCCTTATCTATAAG
TGGACAGGTTTCCCCATAGGGACCATTACACATATACATATAAGTACATACTTCCATAAC
GCTTGTAACAGTTGATTTAAAATCACTCCACAGTATTGATAAATAGCTCTATATTTTCAA
GGTGCAGAAGAATTCCACAGCCTTAATTATTTCAGTGTCTTGCTGGTCTGCCTTAAGTGT
ATCTTCTGGGTTTTTGGTTGTCTCATTATTTTTAAATTTTTCTGCAGTTGTTCATTTTGT
ATGCACACAACGTCGTTTTGTAAAGGTAGGTTGTAAATATTTTATTTGTAAGTCAAAATC
ACTCATGTGTAATGTTGTAAAGTGATGATCTGCTGTCTTGTTATTATTACTACAGTAAAT
GTTATAAGTTATGGATGAAACTTCAAAATGTACATCTCACAAGTTATGCATTCCTATAAA
TATACTATACTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAACTGTTGGAAAATATGGATATATGTACATCTGTACATGTATATAGTGTATAATATGTA
TGTATATGTTATGGCTCATATGCAGAAATCTATCCATTTGAAGACAGTCCAGGTGGGTCA
GTTTTTCTATTAGAAAACCATTGAGAGCCATTCAAAACCATTAGGGCTGATGGGGAGAGT
TAGATTCTACTCATTGGGGAATTATTTGCTGTATTCTGAAGTCTACAAAGCTTGAAACAT
AATGTGGCCATCATTTAAGTTATTCTGTTTACCTGGAGTCAGAAGAATCTTTGTTTGAAT
TAATAATTGTTGGTTTGCGAACTTCATTGGCACCCCTTAGTTTTGAGTGACCCCTCCCCA
CCAAGTCTTTTGAGAGTGTGGGCTTCTCTGACCATTCAGATAAAGGGCCTTATCTATAAG
TGGACAGGTTTCCCCATAGGGACCATTACACATATACATATAAGTACATACTTCCATAAC
GCTTGTAACAGTTGATTTAAAATCACTCCACAGTATTGATAAATAGCTCTATATTTTCAA
GGTGCAGAAGAATTCCACAGCCTTAATTATTTCAGTGTCTTGCTGGTCTGCCTTAAGTGT
ATCTTCTGGGTTTTTGGTTGTCTCATTATTTTTAAATTTTTCTGCAGTTGTTCATTTTGT
ATGCACACAACGTCGTTTTGTAAAGGTAGGTTGTAAATATTTTATTTGTAAGTCAAAATC
ACTCATGTGTAATGTTGTAAAGTGATGATCTGCTGTCTTGTTATTATTACTACAGTAAAT
GTTATAAGTTATGGATGAAACTTCAAAATGTACATCTCACAAGTTATGCATTCCTATAAA
TATACTATACTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-118, + strand, RNAz p=0.988992

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, + strand, RNAz p=0.988992

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               20-84, + strand, RNAmicro p=0.90363

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               20-84, + strand, RNAmicro p=0.90363

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-852, gnl|bosTau2|chr1 (38429343-38428476)
               

               
               1-852, gnl|Hg17|chr3 (125926981-125927853)
               

               
               1-852, gnl|Mm7|chr16 (33644937-33643855)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-852, gnl|bosTau2|chr1 (38429343-38428476)
               

               
               1-852, gnl|Hg17|chr3 (125926981-125927853)
               

               
               1-852, gnl|Mm7|chr16 (33644937-33643855)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               pgl (0.236967)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pgl (0.236967)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	1-852, gnl\|bosTau2\|chr1 (38429343-38428476)
	1-852, gnl\|Hg17\|chr3 (125926981-125927853)
	1-852, gnl\|Mm7\|chr16 (33644937-33643855)

	pgl (0.236967)
	fco (0.157208)
	lun (0.150489)
	ebs (0.118301)
	ecc (0.115035)