Ss1.1-Pig4-TMW8029O04.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGACCTTAAAAAATTAGGGCACAACTGGTAGTGGTAGTAGCCGTGTGCACTGATTATAGT ATGTCTTTTGGGCTGTGAATCTTGTGATAGCATTGAGAACTTCAATTTGTGTGATGAAAT TTCCAATGATGCTAATTTTAGGTTTGCATGATTATTAATGAGTGACAGTCTCAAGACTGC ATTAAATAAGGTTTCAAGGGAGGTATTTCCTGTGTTGGGCAGAAGGCTTAATTTTTTTCC GCGTTATTCCATAGAAAGCACAATGTTAATTCAACTCTTTATTTTTTTTTTCAGTTCTTA CTGCTTATTTATTGGTCATCTGAGCTGGAACTACTATTATCTCTTTCTTCTTTAAAGCTA GTGCCATTCTGAATTTGTTAAAATAACTGTTGATAGTTTTAGGACAGTTAACTATTTCAG TTGTATGAGACACCCACTGTACAGTTCTCAGGGTGCTAAAACTCAGTCATGTTTCAGTAG CTACTCAAATAGCCCCTTAAGACAGTTTACAGTTGGCTATTACCTTAGAGATGTCTAGAA GGGAAGATACACAAATGCTTTTGATGGATAAAAAATTGCACATATTGAAGAGAAATCAAA ATAAAATTCTATTCTATAGATCATGTTTTAATTTTTTTAACTAAGGAAAGAGAGTCCTCA GGGAAAATTTGTTCTAAACTATAAGGATATAAAAATTGTGTGTTTGGAAATTACTTACAC GTAGCTCTTTAAGATGCATTGTTTCTATTTTTAGTCTTCTTTTGCCTCAATTTTGAAATT TCTTCAGATTACTAGAGAACAGACTTTTTTGTTTGTTTTTTGGGGGTTTTGGCCACACTC TTGGCATGTGGAGGTTCCCAGACCAGGGATCGAGCCCAAGCCACAGCTCTGACAACACTG GATTCTTAACCCGCTGTGCCACAGGGAACGCCTAGAGAATAGACTTTAATAAGTGTATGA CAGAACAGCACTTTCTATTGAAATGTCAAAGTGTTATACTCAGTTTACCCGTACAGAAAT CATTTTTAATGAGTGTTTCAGTTAGTAAATGAAGCTAGATTGTATTTGATGTTATATTTG TGGCTCTGCCAAGATTTCTGAACTTCCGTTTGGAAATTTTGTTGCAGTTGATATTTTTCA ATTGTTTGATATTTTTGAAATAGATTATAAAATTTTTATTTTCAAAAAAATATATTTTAT AGTACATGATCTCTACACCCTCTTAAATACCACAGTCTTGCTTAGTTTACTGTGTTCTCT GATCAAAAGGGTTTAGGTTTATACATGGTATATGGTGCTGTCATGGTCACAAATAAAGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGACCTTAAAAAATTAGGGCACAACTGGTAGTGGTAGTAGCCGTGTGCACTGATTATAGT ATGTCTTTTGGGCTGTGAATCTTGTGATAGCATTGAGAACTTCAATTTGTGTGATGAAAT TTCCAATGATGCTAATTTTAGGTTTGCATGATTATTAATGAGTGACAGTCTCAAGACTGC ATTAAATAAGGTTTCAAGGGAGGTATTTCCTGTGTTGGGCAGAAGGCTTAATTTTTTTCC GCGTTATTCCATAGAAAGCACAATGTTAATTCAACTCTTTATTTTTTTTTTCAGTTCTTA CTGCTTATTTATTGGTCATCTGAGCTGGAACTACTATTATCTCTTTCTTCTTTAAAGCTA GTGCCATTCTGAATTTGTTAAAATAACTGTTGATAGTTTTAGGACAGTTAACTATTTCAG TTGTATGAGACACCCACTGTACAGTTCTCAGGGTGCTAAAACTCAGTCATGTTTCAGTAG CTACTCAAATAGCCCCTTAAGACAGTTTACAGTTGGCTATTACCTTAGAGATGTCTAGAA GGGAAGATACACAAATGCTTTTGATGGATAAAAAATTGCACATATTGAAGAGAAATCAAA ATAAAATTCTATTCTATAGATCATGTTTTAATTTTTTTAACTAAGGAAAGAGAGTCCTCA GGGAAAATTTGTTCTAAACTATAAGGATATAAAAATTGTGTGTTTGGAAATTACTTACAC GTAGCTCTTTAAGATGCATTGTTTCTATTTTTAGTCTTCTTTTGCCTCAATTTTGAAATT TCTTCAGATTACTAGAGAACAGACTTTTTTGTTTGTTTTTTGGGGGTTTTGGCCACACTC TTGGCATGTGGAGGTTCCCAGACCAGGGATCGAGCCCAAGCCACAGCTCTGACAACACTG GATTCTTAACCCGCTGTGCCACAGGGAACGCCTAGAGAATAGACTTTAATAAGTGTATGA CAGAACAGCACTTTCTATTGAAATGTCAAAGTGTTATACTCAGTTTACCCGTACAGAAAT CATTTTTAATGAGTGTTTCAGTTAGTAAATGAAGCTAGATTGTATTTGATGTTATATTTG TGGCTCTGCCAAGATTTCTGAACTTCCGTTTGGAAATTTTGTTGCAGTTGATATTTTTCA ATTGTTTGATATTTTTGAAATAGATTATAAAATTTTTATTTTCAAAAAAATATATTTTAT AGTACATGATCTCTACACCCTCTTAAATACCACAGTCTTGCTTAGTTTACTGTGTTCTCT GATCAAAAGGGTTTAGGTTTATACATGGTATATGGTGCTGTCATGGTCACAAATAAAGAG |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 629-730, - strand, RNAz p=0.708773 | |
| 1022-1176, + strand, RNAz p=0.997152 | |
| 1056-1156, - strand, RNAz p=0.702858 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 629-730, - strand, RNAz p=0.708773 | |
| 1022-1176, + strand, RNAz p=0.997152 | |
| 1056-1156, - strand, RNAz p=0.702858 |
| Aligned organism(s): 42 entry(ies) | More info |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
| 1-598, gnl|bosTau2|chr11 (30265386-30264771) | |
| 1-598, gnl|canFam2|chr10 (64345285-64345862) | |
| 1-598, gnl|dasNov1|scaffold_37182 (9691-10257) | |
| 1-598, gnl|echTel1|scaffold_291800 (19545-18963) | |
| 1-598, gnl|hg17|chr2 (61261162-61261760) | |
| 1-598, gnl|Hg17|chr2 (61261284-61261903) | |
| 1-598, gnl|loxAfr1|scaffold_7142 (28915-29503) | |
| 1-598, gnl|mm7|chr11 (23527238-23526694) | |
| 1-598, gnl|Mm7|chr11 (23527114-23526581) | |
| 1-598, gnl|monDom2|scaffold_1 (25945945-25946564) | |
| 1-598, gnl|oryCun1|scaffold_94762 (13379-13912) | |
| 1-598, gnl|panTro1|chr12 (63484211-63484794) | |
| 1-598, gnl|rheMac2|chr13 (61299076-61299678) | |
| 1-598, gnl|rn3|chr14 (104503176-104502614) | |
| 603-806, gnl|bosTau2|chr11 (30264797-30264588) | |
| 603-806, gnl|canFam2|chr10 (64345917-64346509) | |
| 603-806, gnl|dasNov1|scaffold_37182 (10313-10888) | |
| 603-806, gnl|echTel1|scaffold_291800 (18907-18315) | |
| 603-806, gnl|hg17|chr2 (61261811-61262371) | |
| 603-806, gnl|Hg17|chr2 (61261844-61262091) | |
| 603-806, gnl|loxAfr1|scaffold_7142 (29559-30135) | |
| 603-806, gnl|mm7|chr11 (23526642-23526110) | |
| 603-806, gnl|Mm7|chr11 (23526607-23526376) | |
| 603-806, gnl|monDom2|scaffold_1 (25946620-25947220) | |
| 603-806, gnl|oryCun1|scaffold_94762 (13970-14526) | |
| 603-806, gnl|panTro1|chr12 (63484845-63485405) | |
| 603-806, gnl|rheMac2|chr13 (61299729-61300292) | |
| 603-806, gnl|rn3|chr14 (104502559-104502082) | |
| 1022-1232, gnl|bosTau2|chr11 (30264536-30264326) | |
| 1022-1232, gnl|canFam2|chr10 (64345917-64346509) | |
| 1022-1232, gnl|dasNov1|scaffold_37182 (10313-10888) | |
| 1022-1232, gnl|echTel1|scaffold_291800 (18907-18315) | |
| 1022-1232, gnl|hg17|chr2 (61261811-61262371) | |
| 1022-1232, gnl|Hg17|chr2 (61262168-61262369) | |
| 1022-1232, gnl|loxAfr1|scaffold_7142 (29559-30135) | |
| 1022-1232, gnl|mm7|chr11 (23526642-23526110) | |
| 1022-1232, gnl|Mm7|chr11 (23526301-23526110) | |
| 1022-1232, gnl|monDom2|scaffold_1 (25946620-25947220) | |
| 1022-1232, gnl|oryCun1|scaffold_94762 (13970-14526) | |
| 1022-1232, gnl|panTro1|chr12 (63484845-63485405) | |
| 1022-1232, gnl|rheMac2|chr13 (61299729-61300292) | |
| 1022-1232, gnl|rn3|chr14 (104502559-104502082) |
| Aligned organism(s): 42 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-598, gnl|bosTau2|chr11 (30265386-30264771) | |
| 1-598, gnl|canFam2|chr10 (64345285-64345862) | |
| 1-598, gnl|dasNov1|scaffold_37182 (9691-10257) | |
| 1-598, gnl|echTel1|scaffold_291800 (19545-18963) | |
| 1-598, gnl|hg17|chr2 (61261162-61261760) | |
| 1-598, gnl|Hg17|chr2 (61261284-61261903) | |
| 1-598, gnl|loxAfr1|scaffold_7142 (28915-29503) | |
| 1-598, gnl|mm7|chr11 (23527238-23526694) | |
| 1-598, gnl|Mm7|chr11 (23527114-23526581) | |
| 1-598, gnl|monDom2|scaffold_1 (25945945-25946564) | |
| 1-598, gnl|oryCun1|scaffold_94762 (13379-13912) | |
| 1-598, gnl|panTro1|chr12 (63484211-63484794) | |
| 1-598, gnl|rheMac2|chr13 (61299076-61299678) | |
| 1-598, gnl|rn3|chr14 (104503176-104502614) | |
| 603-806, gnl|bosTau2|chr11 (30264797-30264588) | |
| 603-806, gnl|canFam2|chr10 (64345917-64346509) | |
| 603-806, gnl|dasNov1|scaffold_37182 (10313-10888) | |
| 603-806, gnl|echTel1|scaffold_291800 (18907-18315) | |
| 603-806, gnl|hg17|chr2 (61261811-61262371) | |
| 603-806, gnl|Hg17|chr2 (61261844-61262091) | |
| 603-806, gnl|loxAfr1|scaffold_7142 (29559-30135) | |
| 603-806, gnl|mm7|chr11 (23526642-23526110) | |
| 603-806, gnl|Mm7|chr11 (23526607-23526376) | |
| 603-806, gnl|monDom2|scaffold_1 (25946620-25947220) | |
| 603-806, gnl|oryCun1|scaffold_94762 (13970-14526) | |
| 603-806, gnl|panTro1|chr12 (63484845-63485405) | |
| 603-806, gnl|rheMac2|chr13 (61299729-61300292) | |
| 603-806, gnl|rn3|chr14 (104502559-104502082) | |
| 1022-1232, gnl|bosTau2|chr11 (30264536-30264326) | |
| 1022-1232, gnl|canFam2|chr10 (64345917-64346509) | |
| 1022-1232, gnl|dasNov1|scaffold_37182 (10313-10888) | |
| 1022-1232, gnl|echTel1|scaffold_291800 (18907-18315) | |
| 1022-1232, gnl|hg17|chr2 (61261811-61262371) | |
| 1022-1232, gnl|Hg17|chr2 (61262168-61262369) | |
| 1022-1232, gnl|loxAfr1|scaffold_7142 (29559-30135) | |
| 1022-1232, gnl|mm7|chr11 (23526642-23526110) | |
| 1022-1232, gnl|Mm7|chr11 (23526301-23526110) | |
| 1022-1232, gnl|monDom2|scaffold_1 (25946620-25947220) | |
| 1022-1232, gnl|oryCun1|scaffold_94762 (13970-14526) | |
| 1022-1232, gnl|panTro1|chr12 (63484845-63485405) | |
| 1022-1232, gnl|rheMac2|chr13 (61299729-61300292) | |
| 1022-1232, gnl|rn3|chr14 (104502559-104502082) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| aor (0.195274) | |
| ova (0.129132) | |
| eru (0.120048) |