Non-Coding RNA Search

Ss1.1-Pig4-TMW8029O05.5

Sequence:


               
               TCTTGGAGCAGAAGTTGGACTTTATAGAGTCTGATAGTTCCTGTTCCTCCGAAGCACTTT
CAAAGAAAGAACTCTCAGCGGAAGAGCTATATAAACGACTTGAGAAACTCATTATTGAGG
ACAAAGCAAATGATGAGCAGATCTTTGACTGGGTAGAGGCTAATCTAGATGAAAGCCAGA
TGAGTTCACCTACATTCCTTAGAGCTTTAATGACAGCCGTTTGTAAAGCAGCAATTATAG
CTGACTGCTCTACCTTCCGAGTGGACACTGCTGTTATCAAGCAGAGAGTGCCGATCTTAC
TCAAGTACCTAGACTCAGATACAGAGAAGGAACTGCAAGCACTTTATGCACTACAAGCAT
CAATAGTAAAACTTGATCAACCTGCCAATTTGCTACGGATGTTTTTTGATTGCCTATATG
ATGAGGAGGTGATCTCTGAGGATGCCTTCTACAAATGGGAAAGCAGCAAGGACCCTGCAG
AGCAGAACGGGAAGGGTGTGGCCCTGAAATCTGTCACAGCATTCTTCACATGGCTGCGGG
AAGCAGAAGAGGAGTCTGAGGATAACTAAAACTTCAAATACACAAAACGAAACAAAAGAA
ACAATTTAAGTATTTTTTTAAAAAGTTTCACGTCTTCGCCAATCACAGTGCAGCAAGGCC
AATTCTCGCAGAAACCCCCACGTGTGCACGAGTGGGAGAGGGGAAAGAGAAAAAAAGGTG
ATCATGGAGGAAAAAGGTACTGGAAAAAAGTAAACTTCAAACCTGAGGGCGGGAGCACTA
AAACCAAAATACATGTATTATTTATAGAAAATATTTTCTGTTTTAATCTTTTCTTTTTAA
ACAAGGACTCATACTTAAAAAAAAAAAAACACATCTGTTTAGCAAAAAAAAAAAAGTTGA
GAACTTTTAATTTATTTTAAGGACTGCAAATGCCAGTGTAATTTTTTAATTTGCAGTTTC
TGTAAACAACTTGTATAATAGAAAAGCAGAGAAATAAATTTCCCTCCCCTTCAGATGCAC
CTCACGTTTGTTTTAAAGCATAGTAGTTAGTCCAGATTTAAGAAGGTTTGGGGTGAACAA
GGTAAGAAAGATTTTTTTTTTCTTTTTGGCATCAGATCTTTCTGCCTGCCTCTCAGCTTG
CTTCAGAAAATAAAAAAAAAATCACAATAGTAATCAAAACATACATAACCTGGAACAGAA
GGAAATGCTGTGGACCAGAGAACTCCAAGAATTGTTTTAAAAAAAAAAAAAAAAAAGTGC
TACCCTGGGAAAAGTACTCTTAATACTTTTGAAATCTTTAGAGCAACTTTAAGGCTTGTA
AATACATAGAACAAATATTTAAAAAAAAAAAGAAATTGACTCAATACTATTTCTTTTCAC
TTTCAAAATATAAAGAACAAAATAAAGACAAACATTGCAAGTTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTGGAGCAGAAGTTGGACTTTATAGAGTCTGATAGTTCCTGTTCCTCCGAAGCACTTT
CAAAGAAAGAACTCTCAGCGGAAGAGCTATATAAACGACTTGAGAAACTCATTATTGAGG
ACAAAGCAAATGATGAGCAGATCTTTGACTGGGTAGAGGCTAATCTAGATGAAAGCCAGA
TGAGTTCACCTACATTCCTTAGAGCTTTAATGACAGCCGTTTGTAAAGCAGCAATTATAG
CTGACTGCTCTACCTTCCGAGTGGACACTGCTGTTATCAAGCAGAGAGTGCCGATCTTAC
TCAAGTACCTAGACTCAGATACAGAGAAGGAACTGCAAGCACTTTATGCACTACAAGCAT
CAATAGTAAAACTTGATCAACCTGCCAATTTGCTACGGATGTTTTTTGATTGCCTATATG
ATGAGGAGGTGATCTCTGAGGATGCCTTCTACAAATGGGAAAGCAGCAAGGACCCTGCAG
AGCAGAACGGGAAGGGTGTGGCCCTGAAATCTGTCACAGCATTCTTCACATGGCTGCGGG
AAGCAGAAGAGGAGTCTGAGGATAACTAAAACTTCAAATACACAAAACGAAACAAAAGAA
ACAATTTAAGTATTTTTTTAAAAAGTTTCACGTCTTCGCCAATCACAGTGCAGCAAGGCC
AATTCTCGCAGAAACCCCCACGTGTGCACGAGTGGGAGAGGGGAAAGAGAAAAAAAGGTG
ATCATGGAGGAAAAAGGTACTGGAAAAAAGTAAACTTCAAACCTGAGGGCGGGAGCACTA
AAACCAAAATACATGTATTATTTATAGAAAATATTTTCTGTTTTAATCTTTTCTTTTTAA
ACAAGGACTCATACTTAAAAAAAAAAAAACACATCTGTTTAGCAAAAAAAAAAAAGTTGA
GAACTTTTAATTTATTTTAAGGACTGCAAATGCCAGTGTAATTTTTTAATTTGCAGTTTC
TGTAAACAACTTGTATAATAGAAAAGCAGAGAAATAAATTTCCCTCCCCTTCAGATGCAC
CTCACGTTTGTTTTAAAGCATAGTAGTTAGTCCAGATTTAAGAAGGTTTGGGGTGAACAA
GGTAAGAAAGATTTTTTTTTTCTTTTTGGCATCAGATCTTTCTGCCTGCCTCTCAGCTTG
CTTCAGAAAATAAAAAAAAAATCACAATAGTAATCAAAACATACATAACCTGGAACAGAA
GGAAATGCTGTGGACCAGAGAACTCCAAGAATTGTTTTAAAAAAAAAAAAAAAAAAGTGC
TACCCTGGGAAAAGTACTCTTAATACTTTTGAAATCTTTAGAGCAACTTTAAGGCTTGTA
AATACATAGAACAAATATTTAAAAAAAAAAAGAAATTGACTCAATACTATTTCTTTTCAC
TTTCAAAATATAAAGAACAAAATAAAGACAAACATTGCAAGTTTAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61837885|ref|XP_612458.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61837885|ref|XP_612458.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               383-501, + strand, RNAz p=0.624887
               

               
               904-1015, - strand, RNAz p=0.813964

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               383-501, + strand, RNAz p=0.624887
               

               
               904-1015, - strand, RNAz p=0.813964

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AB209119, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AB209119, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               9-159, gnl|bosTau2|chr2 (85785001-85784851)
               

               
               9-159, gnl|Hg17|chr1 (20889340-20889190)
               

               
               9-159, gnl|Mm7|chr4 (137576517-137576667)
               


               
               383-1428, gnl|bosTau2|chr2 (85778055-85777003)
               

               
               383-1428, gnl|Hg17|chr1 (20879304-20878278)
               

               
               383-1428, gnl|Mm7|chr4 (137584409-137585503)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-159, gnl|bosTau2|chr2 (85785001-85784851)
               

               
               9-159, gnl|Hg17|chr1 (20889340-20889190)
               

               
               9-159, gnl|Mm7|chr4 (137576517-137576667)
               


               
               383-1428, gnl|bosTau2|chr2 (85778055-85777003)
               

               
               383-1428, gnl|Hg17|chr1 (20879304-20878278)
               

               
               383-1428, gnl|Mm7|chr4 (137584409-137585503)

Expressed library(ies): 32 entry(ies)

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Expressed library(ies): 32 entry(ies)

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               fco (0.78604)
               

               
               cmu (0.55918)
               

               
               lyg (0.532411)
               

               
               tbr (0.462535)
               

               
               lin (0.436808)
               

               
               tes (0.415628)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

Expressed library(ies): 32 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.78604)
               

               
               cmu (0.55918)
               

               
               lyg (0.532411)
               

               
               tbr (0.462535)
               

               
               lin (0.436808)
               

               
               tes (0.415628)
               

               
               kid (0.389206)
               

               
               tra (0.369276)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               liv (0.292569)
               

               
               ldo (0.291008)
               

               
               fce (0.271592)
               

               
               ova (0.258264)
               

               
               ret (0.257467)
               

               
               thg (0.253582)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               cut (0.169924)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               eje (0.0988338)

	383-501, + strand, RNAz p=0.624887
	904-1015, - strand, RNAz p=0.813964

	9-159, gnl\|bosTau2\|chr2 (85785001-85784851)
	9-159, gnl\|Hg17\|chr1 (20889340-20889190)
	9-159, gnl\|Mm7\|chr4 (137576517-137576667)

	383-1428, gnl\|bosTau2\|chr2 (85778055-85777003)
	383-1428, gnl\|Hg17\|chr1 (20879304-20878278)
	383-1428, gnl\|Mm7\|chr4 (137584409-137585503)

	fco (0.78604)
	cmu (0.55918)
	lyg (0.532411)
	tbr (0.462535)
	lin (0.436808)
	tes (0.415628)
	kid (0.389206)
	tra (0.369276)
	sme (0.305437)
	isp (0.300752)
	liv (0.292569)
	ldo (0.291008)
	fce (0.271592)
	ova (0.258264)
	ret (0.257467)
	thg (0.253582)
	fcc (0.197785)
	sto (0.179824)
	cut (0.169924)
	nje (0.16592)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	hyp (0.142837)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	ese (0.126502)
	bla (0.124347)
	ecc (0.115035)
	spc (0.113366)
	eje (0.0988338)