Non-Coding RNA Search

Ss1.1-Pig4-TMW8029O06.5

Sequence:


               
               TGAAAATCTAGGGGGCGATGGCGGTTGAGGAAATGACCACCGGTATGAGAGGAGGCTATC
AATCAGATAAAGACCAGAAGCAGGCGTCAGACTCGGCTTTCAACCTAGCCACCCCGGCCC
AATCAAGCTGCTCCGCACAGCCTCTTGTACTAAGCGATCCGCGCCTGGCCAGCGAGGACC
GCTAGGGACCTGGAGGCGGGCCCGGCGCAGGGAGGGCGGGCCAGCGCAGGGGACCGGACG
CAAAGGAACCGGAACCCTTCAGCTGAGGGCGCCTGTTTCCAGAGGGAGCTCGGATCCTGA
CGTCAAAGTTTCCAGCCGGCTTTCGGAGTCTCTTTGCGTCCCTGCGTATCAGAGATGTGG
AATTGGCGGTGACGATGAGGCAGAAGCACTACCTTGAGGCTGCGGCATGGAAACTACAAG
ATAGCTGCCCGGGCCAGGCCCGCTATCTCCTCTGGGCCTACAGTTCGTCACACGATGATA
AAAGCACTTTTGAAGGAACATGTCCATACTGTTTCCAGTTGCTGGTTCCAGATAAGTCTA
GAGTGCGCCTCAAGCCCAAGCCCAAACTGACACCCAAAATACAGAAACTTCTTAATCGAG
AAGCAAGAAATTATACACTCAGTTTTAAAGAAGCAAAAATTCTGGAAAAGTACAAAGAAT
CCAAAAGTGTATTGCTGATTACTTGTAAAACATGCAACAGAACAGTCAAGCATCATGGTA
AAAGTAGAAGCTCTCTATCAGCATTCAAGAGCAATCCTTCCACTCCTGCAAGTAAACTCA
GCCTGAAGACCCCAGAGAGAAAGACTCTAAGCTCTGCAAATCTAAATCCTGTTATGTCTG
GTTCCAAAGGCAAGAGCCCAGCTTTGAATTTCAGAACACCTACATCTGGACAGTCAACAC
CTATTAGTTCCTCAAAGAATGTGAACAAAACAAAGAAACGCTTCTCTCAACTAAAAATGT
TGCTTAGTCAGAGTGAATCCGAAAAGAATCCAAAGGTGGACTTCAGAAATTTCTTATCTT
CTTTGTAAAGGATGGACTATGAAAAAAAAAAAAGTTCAATACAGTTTCTGAAACTAACTC
AGAAAAACAGCTTTTTAAAAAACTTCTGTTTATTCTTAAAATACACAGAATCTAGGGTCC
AAGAGCAAAATTTTCTTGGCATTCTTCAGTGTTTATGGAGAAAATACTTCATTAGAATGA
AAAACTGAAACCTGGCTGCCTTGTAGGGTGATTGTGAGGATCAAAAATGTAAAAATGGTC
CTTGTATGTAGTAAAGATATATATGGACATTGAGTGGTTATATGATTATTTTCTCCTCCT
TTAATTAAGTTTTCATTATTTACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAATCTAGGGGGCGATGGCGGTTGAGGAAATGACCACCGGTATGAGAGGAGGCTATC
AATCAGATAAAGACCAGAAGCAGGCGTCAGACTCGGCTTTCAACCTAGCCACCCCGGCCC
AATCAAGCTGCTCCGCACAGCCTCTTGTACTAAGCGATCCGCGCCTGGCCAGCGAGGACC
GCTAGGGACCTGGAGGCGGGCCCGGCGCAGGGAGGGCGGGCCAGCGCAGGGGACCGGACG
CAAAGGAACCGGAACCCTTCAGCTGAGGGCGCCTGTTTCCAGAGGGAGCTCGGATCCTGA
CGTCAAAGTTTCCAGCCGGCTTTCGGAGTCTCTTTGCGTCCCTGCGTATCAGAGATGTGG
AATTGGCGGTGACGATGAGGCAGAAGCACTACCTTGAGGCTGCGGCATGGAAACTACAAG
ATAGCTGCCCGGGCCAGGCCCGCTATCTCCTCTGGGCCTACAGTTCGTCACACGATGATA
AAAGCACTTTTGAAGGAACATGTCCATACTGTTTCCAGTTGCTGGTTCCAGATAAGTCTA
GAGTGCGCCTCAAGCCCAAGCCCAAACTGACACCCAAAATACAGAAACTTCTTAATCGAG
AAGCAAGAAATTATACACTCAGTTTTAAAGAAGCAAAAATTCTGGAAAAGTACAAAGAAT
CCAAAAGTGTATTGCTGATTACTTGTAAAACATGCAACAGAACAGTCAAGCATCATGGTA
AAAGTAGAAGCTCTCTATCAGCATTCAAGAGCAATCCTTCCACTCCTGCAAGTAAACTCA
GCCTGAAGACCCCAGAGAGAAAGACTCTAAGCTCTGCAAATCTAAATCCTGTTATGTCTG
GTTCCAAAGGCAAGAGCCCAGCTTTGAATTTCAGAACACCTACATCTGGACAGTCAACAC
CTATTAGTTCCTCAAAGAATGTGAACAAAACAAAGAAACGCTTCTCTCAACTAAAAATGT
TGCTTAGTCAGAGTGAATCCGAAAAGAATCCAAAGGTGGACTTCAGAAATTTCTTATCTT
CTTTGTAAAGGATGGACTATGAAAAAAAAAAAAGTTCAATACAGTTTCTGAAACTAACTC
AGAAAAACAGCTTTTTAAAAAACTTCTGTTTATTCTTAAAATACACAGAATCTAGGGTCC
AAGAGCAAAATTTTCTTGGCATTCTTCAGTGTTTATGGAGAAAATACTTCATTAGAATGA
AAAACTGAAACCTGGCTGCCTTGTAGGGTGATTGTGAGGATCAAAAATGTAAAAATGGTC
CTTGTATGTAGTAAAGATATATATGGACATTGAGTGGTTATATGATTATTTTCTCCTCCT
TTAATTAAGTTTTCATTATTTACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61852693|ref|XP_590358.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61852693|ref|XP_590358.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               450-567, - strand, RNAz p=0.987617

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               450-567, - strand, RNAz p=0.987617

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               410-1341, gnl|bosTau2|chr9 (62960579-62959684)
               

               
               410-1341, gnl|Hg17|chr6 (157764576-157763420)
               


               
               556-1289, gnl|bosTau2|chr20 (24977917-24977216)
               

               
               556-1289, gnl|Hg17|chr18 (31808938-31813207)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               410-1341, gnl|bosTau2|chr9 (62960579-62959684)
               

               
               410-1341, gnl|Hg17|chr6 (157764576-157763420)
               


               
               556-1289, gnl|bosTau2|chr20 (24977917-24977216)
               

               
               556-1289, gnl|Hg17|chr18 (31808938-31813207)

Expressed library(ies): 37 entry(ies)

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Expressed library(ies): 37 entry(ies)

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               sag (0.730861)
               

               
               sin (0.524843)
               

               
               isp (0.451128)
               

               
               ret (0.3862)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               mcp (0.341297)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 37 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.730861)
               

               
               sin (0.524843)
               

               
               isp (0.451128)
               

               
               ret (0.3862)
               

               
               mgm (0.360685)
               

               
               fty (0.351679)
               

               
               mcp (0.341297)
               

               
               tbr (0.308356)
               

               
               fat (0.294855)
               

               
               spl (0.286369)
               

               
               sug (0.254582)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               pgl (0.236967)
               

               
               pan (0.23596)
               

               
               spc (0.226732)
               

               
               nms (0.213858)
               

               
               tes (0.207814)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               ill (0.175593)
               

               
               nco (0.161734)
               

               
               mga (0.160205)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	410-1341, gnl\|bosTau2\|chr9 (62960579-62959684)
	410-1341, gnl\|Hg17\|chr6 (157764576-157763420)

	556-1289, gnl\|bosTau2\|chr20 (24977917-24977216)
	556-1289, gnl\|Hg17\|chr18 (31808938-31813207)

	sag (0.730861)
	sin (0.524843)
	isp (0.451128)
	ret (0.3862)
	mgm (0.360685)
	fty (0.351679)
	mcp (0.341297)
	tbr (0.308356)
	fat (0.294855)
	spl (0.286369)
	sug (0.254582)
	tra (0.246184)
	cbe (0.239234)
	pgl (0.236967)
	pan (0.23596)
	spc (0.226732)
	nms (0.213858)
	tes (0.207814)
	aor (0.195274)
	sto (0.179824)
	gul (0.177588)
	ill (0.175593)
	nco (0.161734)
	mga (0.160205)
	bfe (0.149858)
	liv (0.146284)
	cst (0.140036)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	thg (0.126791)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)
	jej (0.0989218)
	ldo (0.0970026)