Non-Coding RNA Search

Ss1.1-Pig4-TMW8029O09.5

Sequence:


               
               GGGACACAGCCCTGCGCGTTCGGAGCTCCAGTGGCGAGCGGTCCAGCAGGGAGCATGAGC
GCCCCTTCCGCGACCCCCATCTTCGCGCCGGGCGAGAACTGCAGCCCCGCATGGCGAGCT
GCGCCCGCGGCCTACGACGCGTCGGACACGCACCTGCAGATCCTGGGCAAGCCGGTGATG
GAGCGCTGGGAGACCCCCTACATGCACGCGCTGGCGGCCGTCGCTGCCTCCAAAGGGGGC
CGGGTCCTGGAGGTGGGGTTTGGCATGGCCATCGCAGCCACTAAGGTGCAGGAGGGTGCC
ATCGACGAGCACTGGATCATCGAGTGCAATGACGGCGTCTTCCAGCGGCTCCAGGACTGG
GCCCAGCAGCAGCCACACAAGGTGGTTCCCTTGAAAGGCCTGTGGGAGGAGGTGGCGCCC
ACCCTGCCAGACAGTCACTTCGATGGAATCCTGTATGACACGTACCCGCTGTCTGAGGAG
ACCTGGCACACACACCAGTTCAACTTCATCAGGGAACATGCTTTCCGCCTGCTGAAGCCA
GGGGGCGTCCTCACCTACTGCAACCTCACCTCCTGGGGCGAGCTGATGAAGTCCAAGTAC
TCGGACATCACCACCATGTTCCAGGAGACGCAGGTGCCAGCCCTGCTGGAGGCAGGTTTC
AGGCAGGAGAACATCCGCACACAGGTCATGGAGCTGGTCCCACCGGCCGACTGCCGCTAT
TATGCCTTCCCGCAGATGATTACACCGCTGGTCACTAAGCAGTGAGCCCTCTGGCTCAGC
TGCCCACACCACTCTGGGGGCTCTGGGCTGCAGGATCCCCAACCCCAACTCAGTGCCTTC
GAGGCTGGGAGCGCCGGCTCTGACCTTTTGCGTCGCTGTCCAGACCCACACCAGCTGCGT
GAGGCCAGCAAGCTTCCCCAACCCCTGCAGTGGGATCACCACTACTGTCCTCCTGGGGGC
TTGAGGATGAAATAAACACTAACAGTAAGCTTGGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGACACAGCCCTGCGCGTTCGGAGCTCCAGTGGCGAGCGGTCCAGCAGGGAGCATGAGC
GCCCCTTCCGCGACCCCCATCTTCGCGCCGGGCGAGAACTGCAGCCCCGCATGGCGAGCT
GCGCCCGCGGCCTACGACGCGTCGGACACGCACCTGCAGATCCTGGGCAAGCCGGTGATG
GAGCGCTGGGAGACCCCCTACATGCACGCGCTGGCGGCCGTCGCTGCCTCCAAAGGGGGC
CGGGTCCTGGAGGTGGGGTTTGGCATGGCCATCGCAGCCACTAAGGTGCAGGAGGGTGCC
ATCGACGAGCACTGGATCATCGAGTGCAATGACGGCGTCTTCCAGCGGCTCCAGGACTGG
GCCCAGCAGCAGCCACACAAGGTGGTTCCCTTGAAAGGCCTGTGGGAGGAGGTGGCGCCC
ACCCTGCCAGACAGTCACTTCGATGGAATCCTGTATGACACGTACCCGCTGTCTGAGGAG
ACCTGGCACACACACCAGTTCAACTTCATCAGGGAACATGCTTTCCGCCTGCTGAAGCCA
GGGGGCGTCCTCACCTACTGCAACCTCACCTCCTGGGGCGAGCTGATGAAGTCCAAGTAC
TCGGACATCACCACCATGTTCCAGGAGACGCAGGTGCCAGCCCTGCTGGAGGCAGGTTTC
AGGCAGGAGAACATCCGCACACAGGTCATGGAGCTGGTCCCACCGGCCGACTGCCGCTAT
TATGCCTTCCCGCAGATGATTACACCGCTGGTCACTAAGCAGTGAGCCCTCTGGCTCAGC
TGCCCACACCACTCTGGGGGCTCTGGGCTGCAGGATCCCCAACCCCAACTCAGTGCCTTC
GAGGCTGGGAGCGCCGGCTCTGACCTTTTGCGTCGCTGTCCAGACCCACACCAGCTGCGT
GAGGCCAGCAAGCTTCCCCAACCCCTGCAGTGGGATCACCACTACTGTCCTCCTGGGGGC
TTGAGGATGAAATAAACACTAACAGTAAGCTTGGCC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|30582907|gb|AAP35682.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|30582907|gb|AAP35682.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               740-850, + strand, RNAz p=0.996673

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               740-850, + strand, RNAz p=0.996673

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               5' of NM_000156, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000156, +

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-257, gnl|bosTau2|chr7 (29073009-29073266)
               

               
               1-257, gnl|Hg17|chr19 (1352530-1352254)
               

               
               1-257, gnl|Mm7|chr10 (80043236-80042988)
               


               
               621-895, gnl|bosTau2|chr7 (29075687-29075957)
               

               
               621-895, gnl|Hg17|chr19 (1348502-1348184)
               

               
               621-895, gnl|Mm7|chr10 (80040752-80040507)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-257, gnl|bosTau2|chr7 (29073009-29073266)
               

               
               1-257, gnl|Hg17|chr19 (1352530-1352254)
               

               
               1-257, gnl|Mm7|chr10 (80043236-80042988)
               


               
               621-895, gnl|bosTau2|chr7 (29075687-29075957)
               

               
               621-895, gnl|Hg17|chr19 (1348502-1348184)
               

               
               621-895, gnl|Mm7|chr10 (80040752-80040507)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               cli (1.37531)
               

               
               fli (0.608643)
               

               
               fcc (0.39557)
               

               
               eli (0.303628)
               

               
               jca (0.22792)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (1.37531)
               

               
               fli (0.608643)
               

               
               fcc (0.39557)
               

               
               eli (0.303628)
               

               
               jca (0.22792)
               

               
               fbs (0.175346)
               

               
               duo (0.172801)
               

               
               fhi (0.169578)
               

               
               pla (0.133672)
               

               
               ova (0.129132)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	1-257, gnl\|bosTau2\|chr7 (29073009-29073266)
	1-257, gnl\|Hg17\|chr19 (1352530-1352254)
	1-257, gnl\|Mm7\|chr10 (80043236-80042988)

	621-895, gnl\|bosTau2\|chr7 (29075687-29075957)
	621-895, gnl\|Hg17\|chr19 (1348502-1348184)
	621-895, gnl\|Mm7\|chr10 (80040752-80040507)

	cli (1.37531)
	fli (0.608643)
	fcc (0.39557)
	eli (0.303628)
	jca (0.22792)
	fbs (0.175346)
	duo (0.172801)
	fhi (0.169578)
	pla (0.133672)
	ova (0.129132)
	eru (0.120048)
	cty (0.10408)