Non-Coding RNA Search

Ss1.1-Pig4-TMW8029O11.3

Sequence:


               
               TGAAAGAACTGCAGGAGTCCGCTGCCATAGAAAAGATTCCCTTGATCCCGTCCACCCCCG
AAGAGATGAGTGAAATGCTCCAGCTCTGCTCCTATGCCCGTATCAAGGTGCCCCAGCAGA
TCCTGCAAGGCCTGGTCGATGTCCGCATCCCTCATAACAACTTCTACCGAAAGCTGTTTT
TGGAAATGGTCAGTGAGAAGTCAAGATACTGTCTCCATCAGAACATGGACAAGATCAAGG
TCCCAACGCAGATCATCTGGGGGAAAGAAGATCAGATACTCGATGTATCTGGGGCAGACA
TGTTGGCCAAGTCAATCACCAACTGCCATGTGGACCTCCTGGAAAACTGTGGGCACTCAG
TGGTGATGGAGAGACCCAGGAAGACAGCCAAGCTCGTGATTGACTTCTTAACTTCCGTGC
ACAACACAGACAACAACAAGAAGCTGGACTAAGGCCTCAATGGCAGCCTGCATTCCACAC
CTGGCATCCACTCCCATCTCCAAAATCTGACACGGCCACTATGTCTCAGGGATCCTGCCC
CAAATGTGGTGGGAGCGCCGGTGTCCCTGAGGAAGCCAGCCCCCCAGCCCCAGTCTCTAC
GGATCCACAGAGCTTCAAGGGCCACCAGGAAACCGCCAATATGTTTTTTGCAAAATGCAA
ATTCATGTGGAACAAAGTAAGAAAACCATCCATGAAATCTCCCCAGAAGTTTTCAAGTTC
ATGTCACAAAGCACTCACCTTGGACCATGACCACCAAGGACATTTTCTTTAAGATGTTCT
CACAAACTGAGGTATTTCTTTTACTTTAGACATTCTCCCCTGCATGGTCAGTGGCTGTTT
TAGGAGCATCAGTCCCCATTCACCAAGCCCCTCTTTTTTATGTCTAATATAAGTTTTATG
TAGAGTCTCATATTGTGAATACAGCCCATCAGCTGCAAGACCGGGGAGGAGTGTGGCAGG
CTGTAGAAAATGCATACATGTGTCCCACCTCAGCCAGCCCTCGGAGCATCAAAGAGCACA
GACGGGGATTTGATTGGCACCCTCGTGTCAGGCATGTCATGGGCAAACCTGAAACAGCTA
CAGTACAAATTGCACCTGACAGGGTAGGTTTTCTGGGAATAATTTATTATTTTAAAAAAT
AGGACTAATAGAGCAGTAACGATCTAGACATCTATCTAAATAATCAGATTTGGGTTCTGC
TCACAAGCACCTCTTTTCTATTTTGCTATGCTACCTAAAACCCTTGGATGTGAAGTACTA
GCCGTTAATGAATTCCATGAATTCTGTGAACAATAATGTGATTGAAAATAAGTCTAAATA
GCTCTAAAAGTGACAACAATGACATGAAACAAATTTAATAAATCTAGATCAGCAACATGC
AAGTGGTGTCTCTTTCTAAGATCTTTCTGTTAACTTTAAAATGTGTTTTTTAAAATAAGG
CTTATTCTACAGGCATTGGAAGAACAATGTTTGCATAAGTTTGCATAAGTTATTAGTTTT
ATTTTTGGAAACCATGTTTGCAGTTTTTATTCAATTGAGGTTATATAGGAACCCAAACTC
CCCAGAAGATTCATTCTTTCAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAAAGAACTGCAGGAGTCCGCTGCCATAGAAAAGATTCCCTTGATCCCGTCCACCCCCG
AAGAGATGAGTGAAATGCTCCAGCTCTGCTCCTATGCCCGTATCAAGGTGCCCCAGCAGA
TCCTGCAAGGCCTGGTCGATGTCCGCATCCCTCATAACAACTTCTACCGAAAGCTGTTTT
TGGAAATGGTCAGTGAGAAGTCAAGATACTGTCTCCATCAGAACATGGACAAGATCAAGG
TCCCAACGCAGATCATCTGGGGGAAAGAAGATCAGATACTCGATGTATCTGGGGCAGACA
TGTTGGCCAAGTCAATCACCAACTGCCATGTGGACCTCCTGGAAAACTGTGGGCACTCAG
TGGTGATGGAGAGACCCAGGAAGACAGCCAAGCTCGTGATTGACTTCTTAACTTCCGTGC
ACAACACAGACAACAACAAGAAGCTGGACTAAGGCCTCAATGGCAGCCTGCATTCCACAC
CTGGCATCCACTCCCATCTCCAAAATCTGACACGGCCACTATGTCTCAGGGATCCTGCCC
CAAATGTGGTGGGAGCGCCGGTGTCCCTGAGGAAGCCAGCCCCCCAGCCCCAGTCTCTAC
GGATCCACAGAGCTTCAAGGGCCACCAGGAAACCGCCAATATGTTTTTTGCAAAATGCAA
ATTCATGTGGAACAAAGTAAGAAAACCATCCATGAAATCTCCCCAGAAGTTTTCAAGTTC
ATGTCACAAAGCACTCACCTTGGACCATGACCACCAAGGACATTTTCTTTAAGATGTTCT
CACAAACTGAGGTATTTCTTTTACTTTAGACATTCTCCCCTGCATGGTCAGTGGCTGTTT
TAGGAGCATCAGTCCCCATTCACCAAGCCCCTCTTTTTTATGTCTAATATAAGTTTTATG
TAGAGTCTCATATTGTGAATACAGCCCATCAGCTGCAAGACCGGGGAGGAGTGTGGCAGG
CTGTAGAAAATGCATACATGTGTCCCACCTCAGCCAGCCCTCGGAGCATCAAAGAGCACA
GACGGGGATTTGATTGGCACCCTCGTGTCAGGCATGTCATGGGCAAACCTGAAACAGCTA
CAGTACAAATTGCACCTGACAGGGTAGGTTTTCTGGGAATAATTTATTATTTTAAAAAAT
AGGACTAATAGAGCAGTAACGATCTAGACATCTATCTAAATAATCAGATTTGGGTTCTGC
TCACAAGCACCTCTTTTCTATTTTGCTATGCTACCTAAAACCCTTGGATGTGAAGTACTA
GCCGTTAATGAATTCCATGAATTCTGTGAACAATAATGTGATTGAAAATAAGTCTAAATA
GCTCTAAAAGTGACAACAATGACATGAAACAAATTTAATAAATCTAGATCAGCAACATGC
AAGTGGTGTCTCTTTCTAAGATCTTTCTGTTAACTTTAAAATGTGTTTTTTAAAATAAGG
CTTATTCTACAGGCATTGGAAGAACAATGTTTGCATAAGTTTGCATAAGTTATTAGTTTT
ATTTTTGGAAACCATGTTTGCAGTTTTTATTCAATTGAGGTTATATAGGAACCCAAACTC
CCCAGAAGATTCATTCTTTCAAAC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61887609|ref|XP_581547.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61887609|ref|XP_581547.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-119, gnl|bosTau2|chr22 (31948378-31948494)
               

               
               3-119, gnl|Hg17|chr3 (58235466-58235582)
               

               
               3-119, gnl|Mm7|chr14 (5855582-5855698)
               


               
               273-1405, gnl|bosTau2|chr22 (31956993-31958116)
               

               
               273-1405, gnl|Hg17|chr3 (58254353-58255531)
               

               
               273-1405, gnl|Mm7|chr14 (5865541-5866876)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-119, gnl|bosTau2|chr22 (31948378-31948494)
               

               
               3-119, gnl|Hg17|chr3 (58235466-58235582)
               

               
               3-119, gnl|Mm7|chr14 (5855582-5855698)
               


               
               273-1405, gnl|bosTau2|chr22 (31956993-31958116)
               

               
               273-1405, gnl|Hg17|chr3 (58254353-58255531)
               

               
               273-1405, gnl|Mm7|chr14 (5865541-5866876)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               sag (0.548145)
               

               
               cje (0.330469)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.548145)
               

               
               cje (0.330469)
               

               
               liv (0.292569)
               

               
               lin (0.291206)
               

               
               cga (0.279096)
               

               
               cbe (0.239234)
               

               
               hea (0.204499)
               

               
               cmu (0.186393)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               isp (0.150376)
               

               
               csk (0.140746)
               

               
               che (0.136314)
               

               
               cov (0.132153)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               tra (0.123092)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	3-119, gnl\|bosTau2\|chr22 (31948378-31948494)
	3-119, gnl\|Hg17\|chr3 (58235466-58235582)
	3-119, gnl\|Mm7\|chr14 (5855582-5855698)

	273-1405, gnl\|bosTau2\|chr22 (31956993-31958116)
	273-1405, gnl\|Hg17\|chr3 (58254353-58255531)
	273-1405, gnl\|Mm7\|chr14 (5865541-5866876)

	sag (0.548145)
	cje (0.330469)
	liv (0.292569)
	lin (0.291206)
	cga (0.279096)
	cbe (0.239234)
	hea (0.204499)
	cmu (0.186393)
	sin (0.174948)
	duo (0.172801)
	eye (0.170503)
	cli (0.152812)
	lun (0.150489)
	isp (0.150376)
	csk (0.140746)
	che (0.136314)
	cov (0.132153)
	ret (0.128733)
	thg (0.126791)
	tra (0.123092)
	spc (0.113366)
	jej (0.0989218)