Non-Coding RNA Search

Ss1.1-Pig4-TMW8029P14.5

Sequence:


               
               GAGTGGAGCTCTGCCCGGAAGCTAGGTGAGTTAGGCATCCCAGCCGAGGGAAGGGAGCCT
GCCACACTGCTGCTGATCCCGGCTGTCTCGCCTTTCTCCCTGATGGGATTCCCGTCGGCG
CCTTCTCGAGCCTGCTGCGCCCCAGTTCCCGGCCCTCGCCCAGGTTCACTGCAGCCGTTC
AGAGGTCTCCAGGAACTGCAACTGGGGAGCCCGCTACCGCAGGGACCTATGGAGCCATTC
TGTAGTGCCATCCAGAGCAACGCACTGCCGCAGCTCCTCTGAGCCTTTCCAGCAAGTTTG
TTCAAGATTGGCTGTCAAGAATCATGGACTGTTATTATATGCCTTGTTTTCTGTCAAGAC
ACCATGATTCCTGGTAACCGAATGCTGATGGTCGTTTTATTATGCCAAGTCCTGCTAGGA
GGCGCGAGCCATGCTAGTTTGATACCTGAGACGGGGAAGAAAAAAGTCGCCGAGATTCAG
GGCCACGCGGGAGGACGCCGCTCAGGGCAGAGCCATGAGCTCCTTCGGGACTTCGAGGCT
ACACTTCTGCAGATGTTCGGGCTGCGTCGCCGCCCGCAGCCTAGCAAGAGCGCCGTCATC
CCAGATTACATGCGGGATCTTTACCGGCTTCAGTCTGGAGAGGAGGAGGAGGAAGAGCAG
ACCCACAGCGTTGGTCTCGAGTATCCCGAGCGCCCTGCCAGTCGGGCCAACACCGTGAGA
AGCTTCCACCACGAAGAACATCTGGAGAACATCCCAGGGACCAGCGAAAACTCTGCTTTT
CGTTTCCTCTTTAACCTCAGCAGCATCCCAGAGAACGAGGTGATCTCATCCGCAGAGCTT
CGACTCTTCCGGGAGCAGGTGGACCAGGGCCCTGACTGGGAGCAGGGCTTCCATCGTATA
AACATTTATGAGGTTATGAAGCCCCCACCAGAAGTGGTGCCTGGACACCTCATCACACGA
CTACTGGACACGAGACTGGTCCACCACAATGTGACACGGTGGGAAACTTTTGATGTGAGC
CCTGCGGTCCTTCGCTGGACCCGGGAGAAGCAGCCAAACTATGGGCTGGCCATTGAGGTG
ACCCACCTCCATCAGACACGGACCCACCAGGGCCAGCATGTCAGGATTAGCCGATCGTTA
CCTCAAGGGAGTGGGGACTGGGCCCAGCTCCGGCCCCTCCTGGTCACATTTGGCCATGAT
GGCCGGGGACATGCCTTGACCCGACGCCGGAGGGCCAAGCGTAGCCCCAAGCATCACCCA
CAGAGGGCTCGGAAGAAGAATAAGAACTGCCGGCGCCACTCGCTCTATGTGGACTTCAGT
GACGTGGGCTGGAATGACTGGATTGTGGCTCCACCAGGCTACCAGGCCTTCTACTGCCAT
GGGGACTGCCCCTTTCCACTGGCTGACCACCTCAACTCAACCAATCATGCCATCGTTCAG
ACCCTGGTCAACTCTGTTAATTCCAGTATCCCCAAAGCCTGTTGTGTTCCCACCGAACTG
AGTGCCATCTCCATGCTATACCTGGATGAGTATGACAAGGTGGTACTGAAAAATTATCAG
GAGATGGTAGTAGAGGGATGTGGTTGCCGCTGAATCAGGCCTTCCGTGGGGAGAGACAGA
CAGACACACACACACACACACCCCATCCACTACTCACTCACACACTACACAGACCGCTTC
CTTATAGCTGGACTTTTATCTTTAAGAAAAAAAAAAAAAAAAGGAAAAAACCCTAAACAT
TCACCTTGACCTTATTTATGACTTTATGTGCAAATGTTTTGACCATATTGATCATATATT
TTGACAAAATATATTTATAACTACATATTAAAAAATAAAATGAGTCATTATTTTAAAGGC
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTGGAGCTCTGCCCGGAAGCTAGGTGAGTTAGGCATCCCAGCCGAGGGAAGGGAGCCT
GCCACACTGCTGCTGATCCCGGCTGTCTCGCCTTTCTCCCTGATGGGATTCCCGTCGGCG
CCTTCTCGAGCCTGCTGCGCCCCAGTTCCCGGCCCTCGCCCAGGTTCACTGCAGCCGTTC
AGAGGTCTCCAGGAACTGCAACTGGGGAGCCCGCTACCGCAGGGACCTATGGAGCCATTC
TGTAGTGCCATCCAGAGCAACGCACTGCCGCAGCTCCTCTGAGCCTTTCCAGCAAGTTTG
TTCAAGATTGGCTGTCAAGAATCATGGACTGTTATTATATGCCTTGTTTTCTGTCAAGAC
ACCATGATTCCTGGTAACCGAATGCTGATGGTCGTTTTATTATGCCAAGTCCTGCTAGGA
GGCGCGAGCCATGCTAGTTTGATACCTGAGACGGGGAAGAAAAAAGTCGCCGAGATTCAG
GGCCACGCGGGAGGACGCCGCTCAGGGCAGAGCCATGAGCTCCTTCGGGACTTCGAGGCT
ACACTTCTGCAGATGTTCGGGCTGCGTCGCCGCCCGCAGCCTAGCAAGAGCGCCGTCATC
CCAGATTACATGCGGGATCTTTACCGGCTTCAGTCTGGAGAGGAGGAGGAGGAAGAGCAG
ACCCACAGCGTTGGTCTCGAGTATCCCGAGCGCCCTGCCAGTCGGGCCAACACCGTGAGA
AGCTTCCACCACGAAGAACATCTGGAGAACATCCCAGGGACCAGCGAAAACTCTGCTTTT
CGTTTCCTCTTTAACCTCAGCAGCATCCCAGAGAACGAGGTGATCTCATCCGCAGAGCTT
CGACTCTTCCGGGAGCAGGTGGACCAGGGCCCTGACTGGGAGCAGGGCTTCCATCGTATA
AACATTTATGAGGTTATGAAGCCCCCACCAGAAGTGGTGCCTGGACACCTCATCACACGA
CTACTGGACACGAGACTGGTCCACCACAATGTGACACGGTGGGAAACTTTTGATGTGAGC
CCTGCGGTCCTTCGCTGGACCCGGGAGAAGCAGCCAAACTATGGGCTGGCCATTGAGGTG
ACCCACCTCCATCAGACACGGACCCACCAGGGCCAGCATGTCAGGATTAGCCGATCGTTA
CCTCAAGGGAGTGGGGACTGGGCCCAGCTCCGGCCCCTCCTGGTCACATTTGGCCATGAT
GGCCGGGGACATGCCTTGACCCGACGCCGGAGGGCCAAGCGTAGCCCCAAGCATCACCCA
CAGAGGGCTCGGAAGAAGAATAAGAACTGCCGGCGCCACTCGCTCTATGTGGACTTCAGT
GACGTGGGCTGGAATGACTGGATTGTGGCTCCACCAGGCTACCAGGCCTTCTACTGCCAT
GGGGACTGCCCCTTTCCACTGGCTGACCACCTCAACTCAACCAATCATGCCATCGTTCAG
ACCCTGGTCAACTCTGTTAATTCCAGTATCCCCAAAGCCTGTTGTGTTCCCACCGAACTG
AGTGCCATCTCCATGCTATACCTGGATGAGTATGACAAGGTGGTACTGAAAAATTATCAG
GAGATGGTAGTAGAGGGATGTGGTTGCCGCTGAATCAGGCCTTCCGTGGGGAGAGACAGA
CAGACACACACACACACACACCCCATCCACTACTCACTCACACACTACACAGACCGCTTC
CTTATAGCTGGACTTTTATCTTTAAGAAAAAAAAAAAAAAAAGGAAAAAACCCTAAACAT
TCACCTTGACCTTATTTATGACTTTATGTGCAAATGTTTTGACCATATTGATCATATATT
TTGACAAAATATATTTATAACTACATATTAAAAAATAAAATGAGTCATTATTTTAAAGGC
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q53XC5_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q53XC5_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1380-1530, - strand, RNAz p=0.857322

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1380-1530, - strand, RNAz p=0.857322

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               781-1589, gnl|bosTau2|chr13 (32141647-32142443)
               

               
               781-1589, gnl|Hg17|chr20 (6706936-6707732)
               

               
               781-1589, gnl|Mm7|chr2 (133301771-133302564)
               


               
               1261-1530, gnl|bosTau2|chr11 (47629537-47629267)
               

               
               1261-1530, gnl|Hg17|chr2 (69004747-69004477)
               

               
               1261-1530, gnl|Mm7|chr6 (87509252-87509522)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               781-1589, gnl|bosTau2|chr13 (32141647-32142443)
               

               
               781-1589, gnl|Hg17|chr20 (6706936-6707732)
               

               
               781-1589, gnl|Mm7|chr2 (133301771-133302564)
               


               
               1261-1530, gnl|bosTau2|chr11 (47629537-47629267)
               

               
               1261-1530, gnl|Hg17|chr2 (69004747-69004477)
               

               
               1261-1530, gnl|Mm7|chr6 (87509252-87509522)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               cst (0.280073)
               

               
               fce (0.271592)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)
               

               
               fce (0.271592)
               

               
               jca (0.22792)
               

               
               tes (0.207814)
               

               
               ill (0.175593)
               

               
               eye (0.170503)
               

               
               fco (0.157208)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               nbm (0.0993246)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	781-1589, gnl\|bosTau2\|chr13 (32141647-32142443)
	781-1589, gnl\|Hg17\|chr20 (6706936-6707732)
	781-1589, gnl\|Mm7\|chr2 (133301771-133302564)

	1261-1530, gnl\|bosTau2\|chr11 (47629537-47629267)
	1261-1530, gnl\|Hg17\|chr2 (69004747-69004477)
	1261-1530, gnl\|Mm7\|chr6 (87509252-87509522)

	cst (0.280073)
	fce (0.271592)
	jca (0.22792)
	tes (0.207814)
	ill (0.175593)
	eye (0.170503)
	fco (0.157208)
	pla (0.133672)
	eep (0.122564)
	ebs (0.118301)
	nbm (0.0993246)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)