Non-Coding RNA Search

Ss1.1-Pig4-TMW8030A01.3

Sequence:


               
               TTTTTTTTTTTTGAGGTTTCCTTCTCAGTTTATTCTGTACCCAGCATTAGGATGAAATGG
TTCTCACAAATAAGGGCCACATGAGCCCTTCCTCGCGACCATGGTCCATGGCAAAGGGCA
GGGCAGAGGGGGGCCTGGGTGGGAGTCCTTGTGAGGGACCAGGCAGGGGACTCGGATTCA
CAAGCACCAGAGGATGAGCAGGAGGCTGCCCCAGGCTGGAGGCCGACAGCGGCCCACAGC
GCCAGGCCAGGGGGAGGGTCAGGAGCTGCCCCGGATCCTTTCCATGTAGCTGCGCAGCTC
CTCAGGGTCCTTCAGTCCCATGTCCTCGCACACCCAGCGGATGTCCTCCTCGCCCGCCAC
CAGGATGGACTGCACCGCAGGGGCCCCCACGGGCTCCTCGGGCAGCTGGGCTGGGGGTGC
TGGCGCAAACGTCACAAACTCCACACGCCTCCGCCGCCCCCCAGCTTCCTTCCTGGTCAA
AGTGCTTGAGGAGCTGGGGGTGCCCTCTGCAGGGGCCTGGGCCTGGGCCAGGGTCAGGGC
CTCCCCTCCTCCCCCACTCTCGCAGGGGCAGCCCCCCTCCCCCTTGGGCAAGCCAGGAGA
CTGGCGGTCCAGCTGGCGGCTCAGTTCCTCCTGGTCAGTGCCCAGCCAGACCCAGTTGTG
GGGCTGGGGGGAGGCGGGGTCGGCGGCACTGTCGGGAGGCTCCTTGCGCTGGTAGCGCAG
CACGAAGACCACGCCATTGACCAGGAAGATGAGGATGGCCAGACAGAAGATGCCCAGCAG
GGCGTACATGCCCAGTTCTAGGTCGGTGACCCGCTGAGGGGCGGGGACCATCTCCTCCTC
TTCCTCCTCCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTTTGAGGTTTCCTTCTCAGTTTATTCTGTACCCAGCATTAGGATGAAATGG
TTCTCACAAATAAGGGCCACATGAGCCCTTCCTCGCGACCATGGTCCATGGCAAAGGGCA
GGGCAGAGGGGGGCCTGGGTGGGAGTCCTTGTGAGGGACCAGGCAGGGGACTCGGATTCA
CAAGCACCAGAGGATGAGCAGGAGGCTGCCCCAGGCTGGAGGCCGACAGCGGCCCACAGC
GCCAGGCCAGGGGGAGGGTCAGGAGCTGCCCCGGATCCTTTCCATGTAGCTGCGCAGCTC
CTCAGGGTCCTTCAGTCCCATGTCCTCGCACACCCAGCGGATGTCCTCCTCGCCCGCCAC
CAGGATGGACTGCACCGCAGGGGCCCCCACGGGCTCCTCGGGCAGCTGGGCTGGGGGTGC
TGGCGCAAACGTCACAAACTCCACACGCCTCCGCCGCCCCCCAGCTTCCTTCCTGGTCAA
AGTGCTTGAGGAGCTGGGGGTGCCCTCTGCAGGGGCCTGGGCCTGGGCCAGGGTCAGGGC
CTCCCCTCCTCCCCCACTCTCGCAGGGGCAGCCCCCCTCCCCCTTGGGCAAGCCAGGAGA
CTGGCGGTCCAGCTGGCGGCTCAGTTCCTCCTGGTCAGTGCCCAGCCAGACCCAGTTGTG
GGGCTGGGGGGAGGCGGGGTCGGCGGCACTGTCGGGAGGCTCCTTGCGCTGGTAGCGCAG
CACGAAGACCACGCCATTGACCAGGAAGATGAGGATGGCCAGACAGAAGATGCCCAGCAG
GGCGTACATGCCCAGTTCTAGGTCGGTGACCCGCTGAGGGGCGGGGACCATCTCCTCCTC
TTCCTCCTCCTC

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               52-171, - strand, RNAz p=0.741201
               

               
               379-852, - strand, RNAz p=0.981803

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               52-171, - strand, RNAz p=0.741201
               

               
               379-852, - strand, RNAz p=0.981803

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               16-852, gnl|bosTau2|chr29 (28303460-28304290)
               

               
               16-852, gnl|Hg17|chr11 (60461203-60460371)
               

               
               16-852, gnl|Mm7|chr19 (10537958-10538817)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               16-852, gnl|bosTau2|chr29 (28303460-28304290)
               

               
               16-852, gnl|Hg17|chr11 (60461203-60460371)
               

               
               16-852, gnl|Mm7|chr19 (10537958-10538817)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               fcc (0.197785)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               pty (0.142714)
               

               
               ebs (0.118301)

	52-171, - strand, RNAz p=0.741201
	379-852, - strand, RNAz p=0.981803

	16-852, gnl\|bosTau2\|chr29 (28303460-28304290)
	16-852, gnl\|Hg17\|chr11 (60461203-60460371)
	16-852, gnl\|Mm7\|chr19 (10537958-10538817)

	fce (0.271592)
	fcc (0.197785)
	nlu (0.191681)
	fbs (0.175346)
	pty (0.142714)
	ebs (0.118301)