Non-Coding RNA Search

Ss1.1-Pig4-TMW8030A02.5

Sequence:


               
               CTTCCACACTGTAAAAAAGTTTACTGCATCATTTGAAGCATCGCTTTCAGGGGAAAGAGA
ACTCAAAACCCCAACAATTTCTCTGAAGGAAACAATTGGGAGATACTCTGATGATCGTGA
AAAGCAAAATGAAATTTATCACAGGAAAATCATCTCTTGGTTTGGTGATTCCCCCTTGAC
TCTCTTTGGTCTGCATCAGCTAATAGAATGTGGAAAGAAGTCTGGGAAAAAAGCTGGAGA
TTGGTATGGACCGGCTGTGGTTGCTCACATTTTAAGAAAAGCAGTTGAAGAAGCAAGACA
CCCTGATTTACAAGGGATAACAATTTATGTTGCTCAAGATTGTACAGTTTACAGTTCTGA
TGTAATTGATAAACAGTGCGCTTCCATGGCCCCTGATAATACAGATGACAAAGCTGTTAT
TATTCTAGTTCCTGTTAGACTTGGTGGAGAAAGAACCAATGCCGACTACTTAGATTTTGT
AAAGGGTATTTTAAGCCTTGAATATTGTGTGGGTATTATTGGTGGCAAACCTAAACAGTC
ATATTACTTTGCTGGATTTCAAGATGACAGTTTGATTTACATGGATCCTCATTACTGCCA
ATCTTTTGTAGATGTCAGCATAAAGGATTTCCCTCTTGAGACATTCCACTGCCCTTCTCC
CAAAAAGATGTCATTTCGAAAAATGGATCCTAGCTGTACAATAGGATTTTACTGTCGAAA
TGTTCAGGACTTCAAACGAGCTTCTGAAGAAATCACTAAGATGCTGAAAAGTTCTTCTAA
GGAGAAATATCCCTTATTTACTTTTGTAAATGCTCATTCCAGAGACTATGATTTTACATC
TACTACAACCAATAAAGAAGACCTTTTCTCAGAGGATGAAAAGAAAAGATTAAACAGATT
TAGCACAGAAGAGTTTGTCTTGCTTTAAAGATTAGCACATGTGTGCTCCATGAGAAGAAA
TCCTTTGAAAAGGAGGGAAAATGAAGAGAAACAAGTATACTTGAAACTGGTATATTTTCA
CAAATATCTTAATTTTATATGTTCTTTTAAGAAAGAACGTTTGAAAACATACACGTTTTA
AAAGATATTTTTCTGAAAAAGAAATGATTTAGTGAATTTTGATTTCTAATAAATATTAAG
TGATTCTGGCTGCATTCCTATTTCCTTGAAATCTGCTAATGATAACTCTACCTTAACTTC
AAGTCTTCCAGTCTTCAAATTCTTCCACCTGAGTCCACTCTTCTCCTGAAGGTTTTGTGA
TATTGGGTCCCAAATTGGGATCACCAAATAGTTTCAAAAGCTTCATTTTATACTAATGAC
CAGAAGACCAGAGAATGACTCATCACTGCTGCCTGAGCTTCGATATTAATGCAACCAAAG
GATGCTTTTGGATGTATCTTGATATATTGAATAATAATTTTAAACTGTGATCTGAGTTAA
GGTAATACTTAGCAATATGATTTTATAATGGCTCCTCATTTTGTGTGCTATTGAGCCTTC
TCTGAGGAGTAAATATAAAGTATTGGTTTTGCCCACAAATGTAAAGGTTATGTTATTAAT
AGTAACTATATCCAATCAGACAGATAAAGGCAAAATTATGTTTGTTTCCTAACTCAAAAA
TGAAACTTTATGGAAACTACTTATTATGCAGTTTTTAAATCTAAAGATAAGTAACAAGAA
AGATATCAATAGATACTCCTCTATGTGATTTTTGCTATTTGTATAAATCAGTATAGTGTT
GTTTAGAAGCTGAGGCCATCTAAAAGGCAAATCTGCCTTAAGTGTATTATATATTACCTA
AAGGCAAATTTGTGATATAAAAGTATGAGTTATTATTGAGCCAGGTTTATAAAATAAGTA
CTTTAATAAAGATATAAGAACACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCCACACTGTAAAAAAGTTTACTGCATCATTTGAAGCATCGCTTTCAGGGGAAAGAGA
ACTCAAAACCCCAACAATTTCTCTGAAGGAAACAATTGGGAGATACTCTGATGATCGTGA
AAAGCAAAATGAAATTTATCACAGGAAAATCATCTCTTGGTTTGGTGATTCCCCCTTGAC
TCTCTTTGGTCTGCATCAGCTAATAGAATGTGGAAAGAAGTCTGGGAAAAAAGCTGGAGA
TTGGTATGGACCGGCTGTGGTTGCTCACATTTTAAGAAAAGCAGTTGAAGAAGCAAGACA
CCCTGATTTACAAGGGATAACAATTTATGTTGCTCAAGATTGTACAGTTTACAGTTCTGA
TGTAATTGATAAACAGTGCGCTTCCATGGCCCCTGATAATACAGATGACAAAGCTGTTAT
TATTCTAGTTCCTGTTAGACTTGGTGGAGAAAGAACCAATGCCGACTACTTAGATTTTGT
AAAGGGTATTTTAAGCCTTGAATATTGTGTGGGTATTATTGGTGGCAAACCTAAACAGTC
ATATTACTTTGCTGGATTTCAAGATGACAGTTTGATTTACATGGATCCTCATTACTGCCA
ATCTTTTGTAGATGTCAGCATAAAGGATTTCCCTCTTGAGACATTCCACTGCCCTTCTCC
CAAAAAGATGTCATTTCGAAAAATGGATCCTAGCTGTACAATAGGATTTTACTGTCGAAA
TGTTCAGGACTTCAAACGAGCTTCTGAAGAAATCACTAAGATGCTGAAAAGTTCTTCTAA
GGAGAAATATCCCTTATTTACTTTTGTAAATGCTCATTCCAGAGACTATGATTTTACATC
TACTACAACCAATAAAGAAGACCTTTTCTCAGAGGATGAAAAGAAAAGATTAAACAGATT
TAGCACAGAAGAGTTTGTCTTGCTTTAAAGATTAGCACATGTGTGCTCCATGAGAAGAAA
TCCTTTGAAAAGGAGGGAAAATGAAGAGAAACAAGTATACTTGAAACTGGTATATTTTCA
CAAATATCTTAATTTTATATGTTCTTTTAAGAAAGAACGTTTGAAAACATACACGTTTTA
AAAGATATTTTTCTGAAAAAGAAATGATTTAGTGAATTTTGATTTCTAATAAATATTAAG
TGATTCTGGCTGCATTCCTATTTCCTTGAAATCTGCTAATGATAACTCTACCTTAACTTC
AAGTCTTCCAGTCTTCAAATTCTTCCACCTGAGTCCACTCTTCTCCTGAAGGTTTTGTGA
TATTGGGTCCCAAATTGGGATCACCAAATAGTTTCAAAAGCTTCATTTTATACTAATGAC
CAGAAGACCAGAGAATGACTCATCACTGCTGCCTGAGCTTCGATATTAATGCAACCAAAG
GATGCTTTTGGATGTATCTTGATATATTGAATAATAATTTTAAACTGTGATCTGAGTTAA
GGTAATACTTAGCAATATGATTTTATAATGGCTCCTCATTTTGTGTGCTATTGAGCCTTC
TCTGAGGAGTAAATATAAAGTATTGGTTTTGCCCACAAATGTAAAGGTTATGTTATTAAT
AGTAACTATATCCAATCAGACAGATAAAGGCAAAATTATGTTTGTTTCCTAACTCAAAAA
TGAAACTTTATGGAAACTACTTATTATGCAGTTTTTAAATCTAAAGATAAGTAACAAGAA
AGATATCAATAGATACTCCTCTATGTGATTTTTGCTATTTGTATAAATCAGTATAGTGTT
GTTTAGAAGCTGAGGCCATCTAAAAGGCAAATCTGCCTTAAGTGTATTATATATTACCTA
AAGGCAAATTTGTGATATAAAAGTATGAGTTATTATTGAGCCAGGTTTATAAAATAAGTA
CTTTAATAAAGATATAAGAACACA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|34869885|ref|XP_342868.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34869885|ref|XP_342868.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1760-1859, - strand, RNAz p=0.99427

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1760-1859, - strand, RNAz p=0.99427

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-286, gnl|bosTau2|chr3 (56128675-56128388)
               

               
               1-286, gnl|Hg17|chr1 (62996751-62997038)
               

               
               1-286, gnl|Mm7|chr4 (98613853-98614139)
               


               
               345-485, gnl|bosTau2|chr3 (56120333-56120193)
               

               
               345-485, gnl|Hg17|chr1 (63006729-63006869)
               

               
               345-485, gnl|Mm7|chr4 (98617018-98617158)
               


               
               759-1435, gnl|bosTau2|chr3 (56083941-56083262)
               

               
               759-1435, gnl|Hg17|chr1 (63041682-63042359)
               

               
               759-1435, gnl|Mm7|chr4 (98651002-98651652)
               


               
               1760-1882, gnl|bosTau2|chr3 (56083110-56082988)
               

               
               1760-1882, gnl|Hg17|chr1 (63042549-63042843)
               

               
               1760-1882, gnl|Mm7|chr4 (98652266-98652391)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-286, gnl|bosTau2|chr3 (56128675-56128388)
               

               
               1-286, gnl|Hg17|chr1 (62996751-62997038)
               

               
               1-286, gnl|Mm7|chr4 (98613853-98614139)
               


               
               345-485, gnl|bosTau2|chr3 (56120333-56120193)
               

               
               345-485, gnl|Hg17|chr1 (63006729-63006869)
               

               
               345-485, gnl|Mm7|chr4 (98617018-98617158)
               


               
               759-1435, gnl|bosTau2|chr3 (56083941-56083262)
               

               
               759-1435, gnl|Hg17|chr1 (63041682-63042359)
               

               
               759-1435, gnl|Mm7|chr4 (98651002-98651652)
               


               
               1760-1882, gnl|bosTau2|chr3 (56083110-56082988)
               

               
               1760-1882, gnl|Hg17|chr1 (63042549-63042843)
               

               
               1760-1882, gnl|Mm7|chr4 (98652266-98652391)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               kid (0.259471)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               kid (0.259471)
               

               
               tra (0.246184)
               

               
               hea (0.204499)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               fat (0.147427)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	1-286, gnl\|bosTau2\|chr3 (56128675-56128388)
	1-286, gnl\|Hg17\|chr1 (62996751-62997038)
	1-286, gnl\|Mm7\|chr4 (98613853-98614139)

	345-485, gnl\|bosTau2\|chr3 (56120333-56120193)
	345-485, gnl\|Hg17\|chr1 (63006729-63006869)
	345-485, gnl\|Mm7\|chr4 (98617018-98617158)

	759-1435, gnl\|bosTau2\|chr3 (56083941-56083262)
	759-1435, gnl\|Hg17\|chr1 (63041682-63042359)
	759-1435, gnl\|Mm7\|chr4 (98651002-98651652)

	1760-1882, gnl\|bosTau2\|chr3 (56083110-56082988)
	1760-1882, gnl\|Hg17\|chr1 (63042549-63042843)
	1760-1882, gnl\|Mm7\|chr4 (98652266-98652391)

	kid (0.259471)
	tra (0.246184)
	hea (0.204499)
	fco (0.157208)
	lun (0.150489)
	fat (0.147427)
	liv (0.146284)
	lin (0.145603)
	lyg (0.133103)
	thg (0.126791)
	jca (0.11396)
	cty (0.10408)