Ss1.1-Pig4-TMW8030A05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCTTCAGAATGGAGAGACCCCAAAGGACCTGAATGATGAAAAGCAGAAGAAAAATATTAA ACAGCGTTTCATGTTCAACATTGCAGATGGTGGTTTTACTGAGTTGCATTCCCTTTGGCA GAATGAGGAGCGGGCAGCCACAGTCACCAAGAAGACCTATGAGATCTGGCATCGACGGCA TGACTACTGGCTGCTGGCTGGCATCATAAACCATGGCTATGCCCGGTGGCAGGACATCCA GAATGACCCACGCTATGCTATCCTCAATGAGCCTTTCAAAGGTGAAATGAACCGTGGCAA TTTCTTAGAGATCAAGAATAAGTTTCTAGCCCGAAGGTTCAAGCTCTTAGAACAAGCCCT GGTGATTGAGGAACAGCTGCGTCGGGCAGCTTACCTGAACATGTCAGAGGACCCCTCCCA CCCTTCCATGGCCCTGAACACCCGCTTTGCTGAGGTGGAGTGTTTGGCGGAGAGTCATCA GCACCTGTCCAAGGAGTCAATGGCAGGAAACAAGCCAGCCAATGCGGTCCTGCACAAAGT TCTGAAACAGCTAGAAGAACTGCTGAGTGACATGAAAGCCGATGTGACTCGACTCCCAGC TACTATTGCCCGAATTCCCCCAGTTGCTGTGAGGCTACAGATGTCCGAGCGTAACATTCT CAGCCGCCTGGCAAACCGGGCACCTGAACCGACTCCACAGCAGGTAGCCCAGCAGCAGTG AAGATCCAGATGGATGATAACACGTCCACCGCTGAGCAGTGACCTTCCTCACTTTCCCTT GCCCAGCTTCTCCCCTGGGGGCCTGAGAGACCCTCTCCTCCCTTCTGCCCCATCTTCCAA GCTGTAGAGGAACAGCCCCCAGTGCACTGGGGGAGGGGAGGGAGTGAGGGGCAGTGGTGC CCTTCCTGCTGGAGAGACATGCAGCAGTAGCGCCGGCGCCATCTGCAGGGAGCTGGCGGG CTGGCCTTTTGGGCCCTGGCTTCTCCCCACTGTAACGTCTGTTACACACAAACTGTTGTG GGTTCCCGCCAGGCTTGAAGAAAATGATCTGAATTTCTTCCTCCTTTTGGTTTTATTTTG TTGGTTTATTTTGTGTTTTCATTTCTCCTTTTTGGGGGGTATTCACAGTGGGCCGGGCCC CTGGGCGAGACACAGCTACCTCTGTTGGCATCTTTTTAATACCAGGAACCCAGCGGATCC AGCCCCTGAGCGGCTAGAATGAAATAAAGTTGGAAAAAAAAAAAAAAAAAAAAAGGAAAA GAACCAAAAGCATAAAAAACCACAGCAAATTTCTTGACAAAAATTGAAAATAAAAGTTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCTTCAGAATGGAGAGACCCCAAAGGACCTGAATGATGAAAAGCAGAAGAAAAATATTAA ACAGCGTTTCATGTTCAACATTGCAGATGGTGGTTTTACTGAGTTGCATTCCCTTTGGCA GAATGAGGAGCGGGCAGCCACAGTCACCAAGAAGACCTATGAGATCTGGCATCGACGGCA TGACTACTGGCTGCTGGCTGGCATCATAAACCATGGCTATGCCCGGTGGCAGGACATCCA GAATGACCCACGCTATGCTATCCTCAATGAGCCTTTCAAAGGTGAAATGAACCGTGGCAA TTTCTTAGAGATCAAGAATAAGTTTCTAGCCCGAAGGTTCAAGCTCTTAGAACAAGCCCT GGTGATTGAGGAACAGCTGCGTCGGGCAGCTTACCTGAACATGTCAGAGGACCCCTCCCA CCCTTCCATGGCCCTGAACACCCGCTTTGCTGAGGTGGAGTGTTTGGCGGAGAGTCATCA GCACCTGTCCAAGGAGTCAATGGCAGGAAACAAGCCAGCCAATGCGGTCCTGCACAAAGT TCTGAAACAGCTAGAAGAACTGCTGAGTGACATGAAAGCCGATGTGACTCGACTCCCAGC TACTATTGCCCGAATTCCCCCAGTTGCTGTGAGGCTACAGATGTCCGAGCGTAACATTCT CAGCCGCCTGGCAAACCGGGCACCTGAACCGACTCCACAGCAGGTAGCCCAGCAGCAGTG AAGATCCAGATGGATGATAACACGTCCACCGCTGAGCAGTGACCTTCCTCACTTTCCCTT GCCCAGCTTCTCCCCTGGGGGCCTGAGAGACCCTCTCCTCCCTTCTGCCCCATCTTCCAA GCTGTAGAGGAACAGCCCCCAGTGCACTGGGGGAGGGGAGGGAGTGAGGGGCAGTGGTGC CCTTCCTGCTGGAGAGACATGCAGCAGTAGCGCCGGCGCCATCTGCAGGGAGCTGGCGGG CTGGCCTTTTGGGCCCTGGCTTCTCCCCACTGTAACGTCTGTTACACACAAACTGTTGTG GGTTCCCGCCAGGCTTGAAGAAAATGATCTGAATTTCTTCCTCCTTTTGGTTTTATTTTG TTGGTTTATTTTGTGTTTTCATTTCTCCTTTTTGGGGGGTATTCACAGTGGGCCGGGCCC CTGGGCGAGACACAGCTACCTCTGTTGGCATCTTTTTAATACCAGGAACCCAGCGGATCC AGCCCCTGAGCGGCTAGAATGAAATAAAGTTGGAAAAAAAAAAAAAAAAAAAAAGGAAAA GAACCAAAAGCATAAAAAACCACAGCAAATTTCTTGACAAAAATTGAAAATAAAAGTTTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 101-223, gnl|bosTau2|chr5 (60603708-60603829) | |
| 101-223, gnl|Hg17|chr12 (6557565-6557444) | |
| 101-223, gnl|Mm7|chr6 (125148963-125149083) | |
| 342-537, gnl|bosTau2|chr16 (35025413-35025608) | |
| 342-537, gnl|canFam2|chr5 (63027897-63028056) | |
| 342-537, gnl|danRer3|chr11 (14567941-14567786) | |
| 342-537, gnl|dasNov1|scaffold_4087 (133873-134031) | |
| 342-537, gnl|echTel1|scaffold_322851 (6582-6423) | |
| 342-537, gnl|fr1|chrUn (283169132-283169287) | |
| 342-537, gnl|galGal2|chr21 (578481-578309) | |
| 342-537, gnl|hg17|chr1 (6104114-6104273) | |
| 342-537, gnl|Hg17|chr1 (6104318-6104123) | |
| 342-537, gnl|loxAfr1|scaffold_119765 (3515-3672) | |
| 342-537, gnl|mm7|chr4 (151374231-151374072) | |
| 342-537, gnl|Mm7|chr4 (151374025-151374220) | |
| 342-537, gnl|monDom2|scaffold_78 (2451369-2451213) | |
| 342-537, gnl|oryCun1|scaffold_184115 (7397-7556) | |
| 342-537, gnl|panTro1|chr1 (6031337-6031496) | |
| 342-537, gnl|rheMac2|chr1 (9110079-9110238) | |
| 342-537, gnl|rn3|chr5 (169625679-169625520) | |
| 342-537, gnl|tetNig1|chr20 (664802-664954) | |
| 342-537, gnl|xenTro1|scaffold_46 (495321-495474) | |
| 538-705, gnl|bosTau2|chr16 (35027198-35027365) | |
| 538-705, gnl|Hg17|chr1 (6101107-6100940) | |
| 538-705, gnl|Mm7|chr4 (151374973-151375140) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 101-223, gnl|bosTau2|chr5 (60603708-60603829) | |
| 101-223, gnl|Hg17|chr12 (6557565-6557444) | |
| 101-223, gnl|Mm7|chr6 (125148963-125149083) | |
| 342-537, gnl|bosTau2|chr16 (35025413-35025608) | |
| 342-537, gnl|canFam2|chr5 (63027897-63028056) | |
| 342-537, gnl|danRer3|chr11 (14567941-14567786) | |
| 342-537, gnl|dasNov1|scaffold_4087 (133873-134031) | |
| 342-537, gnl|echTel1|scaffold_322851 (6582-6423) | |
| 342-537, gnl|fr1|chrUn (283169132-283169287) | |
| 342-537, gnl|galGal2|chr21 (578481-578309) | |
| 342-537, gnl|hg17|chr1 (6104114-6104273) | |
| 342-537, gnl|Hg17|chr1 (6104318-6104123) | |
| 342-537, gnl|loxAfr1|scaffold_119765 (3515-3672) | |
| 342-537, gnl|mm7|chr4 (151374231-151374072) | |
| 342-537, gnl|Mm7|chr4 (151374025-151374220) | |
| 342-537, gnl|monDom2|scaffold_78 (2451369-2451213) | |
| 342-537, gnl|oryCun1|scaffold_184115 (7397-7556) | |
| 342-537, gnl|panTro1|chr1 (6031337-6031496) | |
| 342-537, gnl|rheMac2|chr1 (9110079-9110238) | |
| 342-537, gnl|rn3|chr5 (169625679-169625520) | |
| 342-537, gnl|tetNig1|chr20 (664802-664954) | |
| 342-537, gnl|xenTro1|scaffold_46 (495321-495474) | |
| 538-705, gnl|bosTau2|chr16 (35027198-35027365) | |
| 538-705, gnl|Hg17|chr1 (6101107-6100940) | |
| 538-705, gnl|Mm7|chr4 (151374973-151375140) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| amn (0.417711) | |
| nep (0.36785) | |
| fbs (0.350693) | |
| med (0.348756) | |
| fce (0.271592) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| nep (0.36785) | |
| fbs (0.350693) | |
| med (0.348756) | |
| fce (0.271592) | |
| eru (0.240096) | |
| ebs (0.236602) | |
| fty (0.17584) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| pty (0.142714) | |
| pla (0.133672) | |
| ecc (0.115035) | |
| cty (0.10408) | |
| nbm (0.0993246) |