Ss1.1-Pig4-TMW8030A16.5
|
TGAACTGTCTTCGTGCCAAGAAACCCTGGATCTGGGGCCTAGTACTTCCAGAGCCAAGCC
AAGCATCCAGGTGTCTGTATCTGGGATGAAGGTCTTCAGCCCTCAAGATTGCTCCTCAGT
CCCTTCCTTTCAGGGGTTGCTGCTCTTTGTAAAATGTGCTGGTGGTGGGCCCTCTCCTCC
CCAACTTCTAGGGCAGGACAAGGCTGGGGGACCTCAGATCCCCTTGTTTGGGTGGCTGGA
AAGAGGTCTTCTCTCCCAGATATCCCCCAGCCTCAGTGCCCATACATAGCTCTTTCAGCC
AGACCCCTCCCCTCCACCTCCAGAATCCTTGCCTTCTCCTTGTGAGAGAGAAGATAGAAG
GTAAATTCTGTTGTTCCTCCCCCAAGTCCCAGGATTAGGCAAGGATCCTAAGTTAGAAAG
AGGAGCCGATATACAGGCCTGGCATTCCGTCAGCTCCCACTCTTCCTAACCCCTGCCCTC
CCCATGTGTGTCACAGATACTTGCTCTTAAGTTGCAAGAGACCAAACCCACCCTGGAGTT
AGGGTCTAAATAACAGCCACTCACCCTTGCTCCAGCCCCTTTAGGACCCCCATCACAAGA
CAAAACTCAGGATGCTGGCTAAGCTAGGAATATACCCCATCCCCTCACCTCCCCCCATAT
TCTCCCAGCAGCCCCCACCAGCTCTACCAATCAAACCAGTGATCTTCTCAACCTTGCCTC
ACAGTGACTCCGCAGCGCCAAGCGGCGACCATCAAGAGTCAGATTGGAGGAAAGGGAACC
CAAGCAGTAGAGTATGATAATGGAGTCTTATTCATTCAAATCTTGGATTTTTTTTTCCCT
AAGAAGATTCTCTTTTGCGAGGGAATGGGGAAACAGACTCCTCATCAAGGGTTCAAACAT
CAACTTTTCTGACTTTTTTAATCATCATCATCATTATTTTTAATTAAAAAATGCCTGTAT
GCCTTTTTTTGGTCCAATTGTAAATAAATATACCATTGTCCTGTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGAACTGTCTTCGTGCCAAGAAACCCTGGATCTGGGGCCTAGTACTTCCAGAGCCAAGCC
AAGCATCCAGGTGTCTGTATCTGGGATGAAGGTCTTCAGCCCTCAAGATTGCTCCTCAGT
CCCTTCCTTTCAGGGGTTGCTGCTCTTTGTAAAATGTGCTGGTGGTGGGCCCTCTCCTCC
CCAACTTCTAGGGCAGGACAAGGCTGGGGGACCTCAGATCCCCTTGTTTGGGTGGCTGGA
AAGAGGTCTTCTCTCCCAGATATCCCCCAGCCTCAGTGCCCATACATAGCTCTTTCAGCC
AGACCCCTCCCCTCCACCTCCAGAATCCTTGCCTTCTCCTTGTGAGAGAGAAGATAGAAG
GTAAATTCTGTTGTTCCTCCCCCAAGTCCCAGGATTAGGCAAGGATCCTAAGTTAGAAAG
AGGAGCCGATATACAGGCCTGGCATTCCGTCAGCTCCCACTCTTCCTAACCCCTGCCCTC
CCCATGTGTGTCACAGATACTTGCTCTTAAGTTGCAAGAGACCAAACCCACCCTGGAGTT
AGGGTCTAAATAACAGCCACTCACCCTTGCTCCAGCCCCTTTAGGACCCCCATCACAAGA
CAAAACTCAGGATGCTGGCTAAGCTAGGAATATACCCCATCCCCTCACCTCCCCCCATAT
TCTCCCAGCAGCCCCCACCAGCTCTACCAATCAAACCAGTGATCTTCTCAACCTTGCCTC
ACAGTGACTCCGCAGCGCCAAGCGGCGACCATCAAGAGTCAGATTGGAGGAAAGGGAACC
CAAGCAGTAGAGTATGATAATGGAGTCTTATTCATTCAAATCTTGGATTTTTTTTTCCCT
AAGAAGATTCTCTTTTGCGAGGGAATGGGGAAACAGACTCCTCATCAAGGGTTCAAACAT
CAACTTTTCTGACTTTTTTAATCATCATCATCATTATTTTTAATTAAAAAATGCCTGTAT
GCCTTTTTTTGGTCCAATTGTAAATAAATATACCATTGTCCTGTTAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
170-306, 219325 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF072840.1|),
blast E-value=2e-22, identity=86.13% |
|
170-306, 457185 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI679900.1|),
blast E-value=2e-22, identity=86.13% |
|
170-306, 4123469 BARC 8BOV Bos taurus cDNA clone 8BOV_37I19 5', mRNA
(gb|CN789061.1|), blast E-value=2e-22, identity=86.13% |
|
170-306, LB0291.CR_E21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV916230.1|),
blast E-value=2e-22, identity=86.13% |
|
170-306, 000211BCXB008931HT BCXB Bos taurus cDNA, mRNA sequence
(gb|DY126905.1|), blast E-value=2e-22, identity=86.13% |
|
170-306, LB01731.CR.1_D17 GC_BGC-17 Bos taurus cDNA clone IMAGE
(gb|EE334843.1|), blast E-value=2e-22, identity=86.13% |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
|
170-306, 219325 MARC 2BOV Bos taurus cDNA 5', mRNA sequence (gb|BF072840.1|),
blast E-value=2e-22, identity=86.13% |
|
170-306, 457185 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|BI679900.1|),
blast E-value=2e-22, identity=86.13% |
|
170-306, 4123469 BARC 8BOV Bos taurus cDNA clone 8BOV_37I19 5', mRNA
(gb|CN789061.1|), blast E-value=2e-22, identity=86.13% |
|
170-306, LB0291.CR_E21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|DV916230.1|),
blast E-value=2e-22, identity=86.13% |
|
170-306, 000211BCXB008931HT BCXB Bos taurus cDNA, mRNA sequence
(gb|DY126905.1|), blast E-value=2e-22, identity=86.13% |
|
170-306, LB01731.CR.1_D17 GC_BGC-17 Bos taurus cDNA clone IMAGE
(gb|EE334843.1|), blast E-value=2e-22, identity=86.13% |
|
1-321, gnl|bosTau2|chr13 (42355473-42355145) |
|
1-321, gnl|canFam2|chr24 (24541834-24542212) |
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1-321, gnl|dasNov1|scaffold_79582 (476-57) |
|
1-321, gnl|echTel1|scaffold_310271 (4218-4506) |
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1-321, gnl|hg17|chr20 (30217555-30217950) |
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1-321, gnl|Hg17|chr20 (30217689-30218005) |
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1-321, gnl|mm7|chr2 (152950223-152950586) |
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1-321, gnl|Mm7|chr2 (152950325-152950643) |
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1-321, gnl|monDom2|scaffold_38 (889751-889257) |
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1-321, gnl|oryCun1|scaffold_204830 (4512-4163) |
|
1-321, gnl|panTro1|chr21 (31915689-31916085) |
|
1-321, gnl|rheMac2|chr10 (32406107-32405717) |
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1-321, gnl|rn3|chr3 (143463488-143463811) |
| |
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336-1005, gnl|bosTau2|chr13 (42355105-42354442) |
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336-1005, gnl|Hg17|chr20 (30218048-30218721) |
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336-1005, gnl|Mm7|chr2 (152950675-152951310) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
1-321, gnl|bosTau2|chr13 (42355473-42355145) |
|
1-321, gnl|canFam2|chr24 (24541834-24542212) |
|
1-321, gnl|dasNov1|scaffold_79582 (476-57) |
|
1-321, gnl|echTel1|scaffold_310271 (4218-4506) |
|
1-321, gnl|hg17|chr20 (30217555-30217950) |
|
1-321, gnl|Hg17|chr20 (30217689-30218005) |
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1-321, gnl|mm7|chr2 (152950223-152950586) |
|
1-321, gnl|Mm7|chr2 (152950325-152950643) |
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1-321, gnl|monDom2|scaffold_38 (889751-889257) |
|
1-321, gnl|oryCun1|scaffold_204830 (4512-4163) |
|
1-321, gnl|panTro1|chr21 (31915689-31916085) |
|
1-321, gnl|rheMac2|chr10 (32406107-32405717) |
|
1-321, gnl|rn3|chr3 (143463488-143463811) |
| |
|
336-1005, gnl|bosTau2|chr13 (42355105-42354442) |
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336-1005, gnl|Hg17|chr20 (30218048-30218721) |
|
336-1005, gnl|Mm7|chr2 (152950675-152951310) |
|
cov (0.528611) |
|
ece (0.229305) |
|
mas (0.210305) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
rec (0.17307) |
|
eye (0.170503) |
|
nje (0.16592) |
|
nco (0.161734) |
|
eli (0.151814) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
cov (0.528611) |
|
ece (0.229305) |
|
mas (0.210305) |
|
nlu (0.191681) |
|
fty (0.17584) |
|
rec (0.17307) |
|
eye (0.170503) |
|
nje (0.16592) |
|
nco (0.161734) |
|
eli (0.151814) |
|
lyg (0.133103) |
|
thg (0.126791) |
|
ebs (0.118301) |
|
ecc (0.115035) |
|
cty (0.10408) |
