Non-Coding RNA Search

Ss1.1-Pig4-TMW8030A20.3

Sequence:


               
               TGCAGCAGGTTAAGGATCTGGTGTTGTCACTGTATCGGCTCAGGTCACTGCCGTGGCATG
GATTTGATCCCTGGCCCGGAACTTCCACATGCCACAGGTGCAGCCAAAAAAAAGTTACAC
TTTGGTGTGAATGTTGGCACAACAGAATGACAGACTTAAACACTGAGTAGCTTCAGTTAG
TGTGGTATAAAATAGTTTTTAGAATATGTTCGTGATTTCTGGAAACAATTATAGTTTACC
TCAAAATCTGAAAGTCTCTTTCCCCAAGTTAATAAGTGCCTGGCCAGCTATCATATTACT
TTATGTTTGTCTGTTTTTTAAAGGTTGCACGTTCAAGATTGTGAAAATGAGATGGTCTTT
CTGAAGGCTACCCTGCCTATCTGTAAATGAATCTGTTGAGTGCTGTATTTGCTCCCACAG
CTTATTATAGAATGCTACTTGGTAATACAATATCATACTTATTAACAGTTTTCACTTCAG
AAGTGTAATAGGTAAAATTATCTTCAGTATGTATTGTAGTGGGTCCCCTGTTTTGTCTTT
CATCATCCTTTAAACTGCTGTGAATTTTTTGTCTTGACTTGAAAGCAAGGATAGAGAAAC
ACTTCAAAGAGATATTTTTTTTTCCATTCCAGAATTTATGCTCATAGTCATATTTTGCTT
ATATTTACAGTCATGAACTCTTAAGCTGGCAGCTACAACCAAGAACCAAAAAAATGGTGC
ATTCTGCTTCTTGTAATTCATCTCTGCTAATAAATTATAAGAAGCAGGATAATTAGAGAA
AATATTTTATTTGGGTGGTTTCTATAAACAAGGGACTATAATTCTTGTACATTATTTTTC
ATCTTTGCTGTTTCTTTAAGAAACCTGATGTGCCACAGAATTATTTTAAGGTGTTTCATA
TACGAATTGTTTTAAAAGTGTTCTCATTATCAGAGTAATTGTAGATATATTTCAAAGTGA
AACTGATAATTTTTAAAGGCCTGAGTACTTACTGACCTAAGAAGCAATTGTATGAATTCT
CTGGAGGGAAGAGAGGATCTCAGTGGAAGTTGTGTGACTTTTATGTATCTGTGCCATCAA
ATATAGGTAAAAAATATCAATTGTGCAATTCTGCTGTTTAAACAGGAACTATTGGCCTCC
TTGGCCCTAAATGAAAGGGCTATTTTAAGTTGACTATTTTATTGTAAATTAATCCATCCT
AATTTTTAAAAATTTGGTTGAATGTTTTTCTTGTTAAATGTTTTAAAAATAAAAACTGGA
AGTTCTTTGCTTAGTCATAATTGGTTTTTCCGCTGATGTGCCTTTATTGAAAGCTAATAA
TTAAATTCAGACTTTTGGATATGACATTTGGGCAACTTTGGAAGATCTGAGTTCCTCATT
TGGTCTCATATTTATTACTTATTTATTTATTTATTGCCTTTTTAGGTCTGTACCCATGGC
ATATAGAAGCTCCCATTCTAAGGGTCCAGTCGGAGCTGCAGCTGCCAGCCTACACCGCAG
CCACAGCAATGCCAGAACCTTAACCCACTGAGCCAGGCCAAGGCTTGAACCCATAGCCTA
TGGATACTAGTTGGATTCTTAACCTGCTGAACCACAAAGGGAACTCCAGAGCCTGCTTTA
TTATATCAGGAATGGTTTACATCTGTTTTGTCAATTCTTACACATTAATATGAAGTGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCAGCAGGTTAAGGATCTGGTGTTGTCACTGTATCGGCTCAGGTCACTGCCGTGGCATG
GATTTGATCCCTGGCCCGGAACTTCCACATGCCACAGGTGCAGCCAAAAAAAAGTTACAC
TTTGGTGTGAATGTTGGCACAACAGAATGACAGACTTAAACACTGAGTAGCTTCAGTTAG
TGTGGTATAAAATAGTTTTTAGAATATGTTCGTGATTTCTGGAAACAATTATAGTTTACC
TCAAAATCTGAAAGTCTCTTTCCCCAAGTTAATAAGTGCCTGGCCAGCTATCATATTACT
TTATGTTTGTCTGTTTTTTAAAGGTTGCACGTTCAAGATTGTGAAAATGAGATGGTCTTT
CTGAAGGCTACCCTGCCTATCTGTAAATGAATCTGTTGAGTGCTGTATTTGCTCCCACAG
CTTATTATAGAATGCTACTTGGTAATACAATATCATACTTATTAACAGTTTTCACTTCAG
AAGTGTAATAGGTAAAATTATCTTCAGTATGTATTGTAGTGGGTCCCCTGTTTTGTCTTT
CATCATCCTTTAAACTGCTGTGAATTTTTTGTCTTGACTTGAAAGCAAGGATAGAGAAAC
ACTTCAAAGAGATATTTTTTTTTCCATTCCAGAATTTATGCTCATAGTCATATTTTGCTT
ATATTTACAGTCATGAACTCTTAAGCTGGCAGCTACAACCAAGAACCAAAAAAATGGTGC
ATTCTGCTTCTTGTAATTCATCTCTGCTAATAAATTATAAGAAGCAGGATAATTAGAGAA
AATATTTTATTTGGGTGGTTTCTATAAACAAGGGACTATAATTCTTGTACATTATTTTTC
ATCTTTGCTGTTTCTTTAAGAAACCTGATGTGCCACAGAATTATTTTAAGGTGTTTCATA
TACGAATTGTTTTAAAAGTGTTCTCATTATCAGAGTAATTGTAGATATATTTCAAAGTGA
AACTGATAATTTTTAAAGGCCTGAGTACTTACTGACCTAAGAAGCAATTGTATGAATTCT
CTGGAGGGAAGAGAGGATCTCAGTGGAAGTTGTGTGACTTTTATGTATCTGTGCCATCAA
ATATAGGTAAAAAATATCAATTGTGCAATTCTGCTGTTTAAACAGGAACTATTGGCCTCC
TTGGCCCTAAATGAAAGGGCTATTTTAAGTTGACTATTTTATTGTAAATTAATCCATCCT
AATTTTTAAAAATTTGGTTGAATGTTTTTCTTGTTAAATGTTTTAAAAATAAAAACTGGA
AGTTCTTTGCTTAGTCATAATTGGTTTTTCCGCTGATGTGCCTTTATTGAAAGCTAATAA
TTAAATTCAGACTTTTGGATATGACATTTGGGCAACTTTGGAAGATCTGAGTTCCTCATT
TGGTCTCATATTTATTACTTATTTATTTATTTATTGCCTTTTTAGGTCTGTACCCATGGC
ATATAGAAGCTCCCATTCTAAGGGTCCAGTCGGAGCTGCAGCTGCCAGCCTACACCGCAG
CCACAGCAATGCCAGAACCTTAACCCACTGAGCCAGGCCAAGGCTTGAACCCATAGCCTA
TGGATACTAGTTGGATTCTTAACCTGCTGAACCACAAAGGGAACTCCAGAGCCTGCTTTA
TTATATCAGGAATGGTTTACATCTGTTTTGTCAATTCTTACACATTAATATGAAGTGCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               109-1385, gnl|bosTau2|chr3 (26372406-26373684)
               

               
               109-1385, gnl|Hg17|chr1 (114960297-114959029)
               

               
               109-1385, gnl|Mm7|chr3 (102860792-102862033)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               109-1385, gnl|bosTau2|chr3 (26372406-26373684)
               

               
               109-1385, gnl|Hg17|chr1 (114960297-114959029)
               

               
               109-1385, gnl|Mm7|chr3 (102860792-102862033)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               sug (0.254582)
               

               
               mgp (0.230681)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               clu (0.119646)
               

               
               ebs (0.118301)

	109-1385, gnl\|bosTau2\|chr3 (26372406-26373684)
	109-1385, gnl\|Hg17\|chr1 (114960297-114959029)
	109-1385, gnl\|Mm7\|chr3 (102860792-102862033)

	rec (0.346141)
	mga (0.32041)
	sug (0.254582)
	mgp (0.230681)
	sag (0.182715)
	fty (0.17584)
	nco (0.161734)
	isp (0.150376)
	hyp (0.142837)
	pty (0.142714)
	pla (0.133672)
	lyg (0.133103)
	thg (0.126791)
	ese (0.126502)
	eru (0.120048)
	clu (0.119646)
	ebs (0.118301)