Non-Coding RNA Search

Ss1.1-Pig4-TMW8030B12.5

Sequence:


               
               CTGTCTCCCAATTCGCGCTTCTGGATGCGGTTTCACGGATGATTTAGGATGCTGCCCATG
GCTGTGTGACAGGTGTGAGCCCTGAAGTGCCCTTGAGGTATGGCTGGCAAGAGGATTTTG
TAAACTGAGAGGTGAAGGGTGTTTACTCTTTTGCTATTATTGCTTCTTCTCGTTTGTCCT
TGTAGAAGTCTGGACGGAATAGCTCTAACCTCCCTTTCCCCTGGGCCGGTGTCTAATCAG
CATCCTTGGTGTTGGGGGGGAAGAGCACGGTCACCATGAAAGGACCCCGACTCGGAGGCC
GAGGTCAGTCCTTGATCTCAGCGTTTCACAGGCACGTCCTAATCGCATTGTAAACAGATA
TATGTATAGTCTATTTTTATGCTTGGGGGGGGTCTCTTGGGTGCTTTTTTACCTTGCGAG
GAGATCTTATCACACAGGGGTTTTCTACATTGTAAAAAGCGACCGGACGAAATCCGTATC
GTGACTTAAATGAGGCTTCCGACCTCTGGGATTTTAGCCGTGGCGTGTGCTGGGTGGCAC
GGTAGGGAAACCGCGTGCCCCCTCTTGGTGGTATATTTTGAATTTCTGACCTAGAGGGGC
GTCTGAGAAGACGTAATTAGACTTTTTATATTGAAATCGCAAACTCTCATCACCTGCTAC
TTCCCCAGGGTCCTTTTAGTGTGGCCACGTGGTGTGGCTTGGCATCTCATTCTCTTTGTG
CTCCGACCTCGCTGTCCACACAGTAACTGAATGCAGGTCGTGACTCTCCTTATGCAGGAG
CATCGGCTTTTCTGCCCAGATCAGATGAAGCATTTTCTTGGCTTCCCCGGGCAAATTCAA
AGACCTGCTTTACAAAGCTATTTAGTGTAGCTCCTTAGCCACAGTCTGGGACTTGGGATG
AAATTTAAAACCACCAATACGATTGACTTTGCAAATCCTAGGCTTTTTGGACTGTTGTTA
TCAAAATGGCTTATTTTTCGAGCAAGAGGGACTGTTACCTTGAGAAAAGCTTTTCAAGGA
GATATTGCCTTTCTTCCCCACAAAGTTCGTTTTTGGTTTCCTCTCTTTTCGTCCTCACCA
AGCACTGTGGTCATCACCAGTGCTCTGAATTAAGAAATTCGAGGGGATTTCTTTGTGTCC
TGTGTACTTACAATAAACAAGCTGAAGTATGTCCAAGTAGGTTTCCAATTGCCACCAAAA
CCACGCTGTGTAATTAGGCAGTTGTCAGGTGTGGTCTTTTCCATATTTATATCTGTGTCT
GTAGTTATCTGTCTGTCATCGGACATCAATGCACACATTCTGTCACCCATCTGTCTCGTG
GCTGGATAATGTCAAACCATTGTTGGCAATTGGTACCCACAAAGCTACCCCATCAAATTT
GTTTTAATAACCAAAGGCAAGGGAAAGTCATTTTACTTATTAATAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTCTCCCAATTCGCGCTTCTGGATGCGGTTTCACGGATGATTTAGGATGCTGCCCATG
GCTGTGTGACAGGTGTGAGCCCTGAAGTGCCCTTGAGGTATGGCTGGCAAGAGGATTTTG
TAAACTGAGAGGTGAAGGGTGTTTACTCTTTTGCTATTATTGCTTCTTCTCGTTTGTCCT
TGTAGAAGTCTGGACGGAATAGCTCTAACCTCCCTTTCCCCTGGGCCGGTGTCTAATCAG
CATCCTTGGTGTTGGGGGGGAAGAGCACGGTCACCATGAAAGGACCCCGACTCGGAGGCC
GAGGTCAGTCCTTGATCTCAGCGTTTCACAGGCACGTCCTAATCGCATTGTAAACAGATA
TATGTATAGTCTATTTTTATGCTTGGGGGGGGTCTCTTGGGTGCTTTTTTACCTTGCGAG
GAGATCTTATCACACAGGGGTTTTCTACATTGTAAAAAGCGACCGGACGAAATCCGTATC
GTGACTTAAATGAGGCTTCCGACCTCTGGGATTTTAGCCGTGGCGTGTGCTGGGTGGCAC
GGTAGGGAAACCGCGTGCCCCCTCTTGGTGGTATATTTTGAATTTCTGACCTAGAGGGGC
GTCTGAGAAGACGTAATTAGACTTTTTATATTGAAATCGCAAACTCTCATCACCTGCTAC
TTCCCCAGGGTCCTTTTAGTGTGGCCACGTGGTGTGGCTTGGCATCTCATTCTCTTTGTG
CTCCGACCTCGCTGTCCACACAGTAACTGAATGCAGGTCGTGACTCTCCTTATGCAGGAG
CATCGGCTTTTCTGCCCAGATCAGATGAAGCATTTTCTTGGCTTCCCCGGGCAAATTCAA
AGACCTGCTTTACAAAGCTATTTAGTGTAGCTCCTTAGCCACAGTCTGGGACTTGGGATG
AAATTTAAAACCACCAATACGATTGACTTTGCAAATCCTAGGCTTTTTGGACTGTTGTTA
TCAAAATGGCTTATTTTTCGAGCAAGAGGGACTGTTACCTTGAGAAAAGCTTTTCAAGGA
GATATTGCCTTTCTTCCCCACAAAGTTCGTTTTTGGTTTCCTCTCTTTTCGTCCTCACCA
AGCACTGTGGTCATCACCAGTGCTCTGAATTAAGAAATTCGAGGGGATTTCTTTGTGTCC
TGTGTACTTACAATAAACAAGCTGAAGTATGTCCAAGTAGGTTTCCAATTGCCACCAAAA
CCACGCTGTGTAATTAGGCAGTTGTCAGGTGTGGTCTTTTCCATATTTATATCTGTGTCT
GTAGTTATCTGTCTGTCATCGGACATCAATGCACACATTCTGTCACCCATCTGTCTCGTG
GCTGGATAATGTCAAACCATTGTTGGCAATTGGTACCCACAAAGCTACCCCATCAAATTT
GTTTTAATAACCAAAGGCAAGGGAAAGTCATTTTACTTATTAATAAAT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               58-1428, gnl|bosTau2|chr12 (17676193-17674826)
               

               
               58-1428, gnl|Hg17|chr13 (25518413-25516750)
               

               
               58-1428, gnl|Mm7|chr14 (54498901-54500152)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-1428, gnl|bosTau2|chr12 (17676193-17674826)
               

               
               58-1428, gnl|Hg17|chr13 (25518413-25516750)
               

               
               58-1428, gnl|Mm7|chr14 (54498901-54500152)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

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               elu (1.15607)
               

               
               sme (0.91631)
               

               
               nms (0.855432)
               

               
               tbr (0.616713)
               

               
               ski (0.440205)
               

               
               mas (0.210305)
               

               
               ldo (0.194005)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (1.15607)
               

               
               sme (0.91631)
               

               
               nms (0.855432)
               

               
               tbr (0.616713)
               

               
               ski (0.440205)
               

               
               mas (0.210305)
               

               
               ldo (0.194005)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eep (0.122564)

	58-1428, gnl\|bosTau2\|chr12 (17676193-17674826)
	58-1428, gnl\|Hg17\|chr13 (25518413-25516750)
	58-1428, gnl\|Mm7\|chr14 (54498901-54500152)

	elu (1.15607)
	sme (0.91631)
	nms (0.855432)
	tbr (0.616713)
	ski (0.440205)
	mas (0.210305)
	ldo (0.194005)
	eye (0.170503)
	nco (0.161734)
	bfe (0.149858)
	liv (0.146284)
	nca (0.136874)
	ste (0.135208)
	pla (0.133672)
	nmm (0.132802)
	eep (0.122564)