Ss1.1-Pig4-TMW8030C09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATCAGACCGCCTGAGTCCTACAAGCTCTTGGTCAGACCGAGGCCAGCGTCCGCCCACCGT TCGGCGTACCCCCCGACGCCTACTCTCCAGCCAGGCTGACCTGACGCCGCAGCCCCGCCA TGTCCACCCCTCCGTTGGCGGCATCGGGGATGGCGCCCGGACCCTTCGCTGGGCCCCAGG CTCAGCAGGCCGCCCGGGAGGTCAACACGGCATCGCTCTGCCGGATCGGGCAGGAGACTG TCCAGGACATTGTGTACCGCACCATGGAGATCTTCCAGCTCCTGAGGAACATGCAGCTGC CCAATGGTGTCACTTACCACACTGGGACATATCAAGACCGGTTAGCAAAGCTGCAAGATC ATCTTCGTCAACTTTCTATTCTCTTCAGGAAGCTGAGACTGGTCTATGACAAATGCAATG AAAACTGTGGAGGGATGGATCCCATTCCAGTAGAGCAACTTATTCCATATGTGGAAGAAG ATGGCTCAAAGAATGATGATCGGGCGGGCCCACCTCGTTTTGCTAGTGAAGAGAGGCGAG AAATTGCTGAAGTAAATAAAAAACTCAAACAGAAGAATCAACAGCTGAAGCAAATTATGG ATCAATTACGAAATCTCATCTGGGATATAAATGCCATGTTAGCAATGAGGAACTAAACTG ATATTTAAATTTCCAGCTTTACATGCATTATACTGTTTTTTTTTTCCCCCTCTCAAGTAT TTTTTCCTTTTGAAGAAGATTATTTATCTGCCTTTATTCTAGTCACTAGAATTAAAGTTC CTATTTTTACACTGTGGTGGATTTTTTTTAAAGCTGTTCTATGAAAGATTATTGTAATAA GCTTTGATGGAGTTTGTTTTTGGTTAATCTTCATGGATTGAATAATTGTTTTTTAAAAGC AAAATAATTAAGTTTTGTAAATAAATAAATTTGTAAATAAATTTCTAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATCAGACCGCCTGAGTCCTACAAGCTCTTGGTCAGACCGAGGCCAGCGTCCGCCCACCGT TCGGCGTACCCCCCGACGCCTACTCTCCAGCCAGGCTGACCTGACGCCGCAGCCCCGCCA TGTCCACCCCTCCGTTGGCGGCATCGGGGATGGCGCCCGGACCCTTCGCTGGGCCCCAGG CTCAGCAGGCCGCCCGGGAGGTCAACACGGCATCGCTCTGCCGGATCGGGCAGGAGACTG TCCAGGACATTGTGTACCGCACCATGGAGATCTTCCAGCTCCTGAGGAACATGCAGCTGC CCAATGGTGTCACTTACCACACTGGGACATATCAAGACCGGTTAGCAAAGCTGCAAGATC ATCTTCGTCAACTTTCTATTCTCTTCAGGAAGCTGAGACTGGTCTATGACAAATGCAATG AAAACTGTGGAGGGATGGATCCCATTCCAGTAGAGCAACTTATTCCATATGTGGAAGAAG ATGGCTCAAAGAATGATGATCGGGCGGGCCCACCTCGTTTTGCTAGTGAAGAGAGGCGAG AAATTGCTGAAGTAAATAAAAAACTCAAACAGAAGAATCAACAGCTGAAGCAAATTATGG ATCAATTACGAAATCTCATCTGGGATATAAATGCCATGTTAGCAATGAGGAACTAAACTG ATATTTAAATTTCCAGCTTTACATGCATTATACTGTTTTTTTTTTCCCCCTCTCAAGTAT TTTTTCCTTTTGAAGAAGATTATTTATCTGCCTTTATTCTAGTCACTAGAATTAAAGTTC CTATTTTTACACTGTGGTGGATTTTTTTTAAAGCTGTTCTATGAAAGATTATTGTAATAA GCTTTGATGGAGTTTGTTTTTGGTTAATCTTCATGGATTGAATAATTGTTTTTTAAAAGC AAAATAATTAAGTTTTGTAAATAAATAAATTTGTAAATAAATTTCTAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 158-277, + strand, RNAz p=0.52618 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 158-277, + strand, RNAz p=0.52618 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-299, gnl|bosTau2|chr14 (28254821-28254523) | |
| 1-299, gnl|Hg17|chr8 (118602176-118602476) | |
| 454-560, gnl|bosTau2|chr14 (28246833-28246730) | |
| 454-560, gnl|canFam2|chr13 (19971841-19971963) | |
| 454-560, gnl|danRer3|chr2 (1887493-1887621) | |
| 454-560, gnl|dasNov1|scaffold_1879 (6534-6412) | |
| 454-560, gnl|echTel1|scaffold_277039 (33520-33398) | |
| 454-560, gnl|galGal2|chr2 (133475379-133475257) | |
| 454-560, gnl|hg17|chr8 (118612136-118612258) | |
| 454-560, gnl|Hg17|chr8 (118612141-118612247) | |
| 454-560, gnl|loxAfr1|scaffold_5881 (33443-33565) | |
| 454-560, gnl|mm7|chr15 (52777833-52777955) | |
| 454-560, gnl|Mm7|chr15 (52777838-52777944) | |
| 454-560, gnl|monDom2|scaffold_3 (39169057-39168930) | |
| 454-560, gnl|oryCun1|scaffold_178628 (39569-39447) | |
| 454-560, gnl|panTro1|chr7 (121337721-121337843) | |
| 454-560, gnl|rheMac2|chr8 (120072695-120072817) | |
| 454-560, gnl|rn3|chr7 (89028835-89028956) | |
| 454-560, gnl|tetNig1|chr21_random (939033-938917) | |
| 454-560, gnl|xenTro1|scaffold_301 (613710-613838) | |
| 561-948, gnl|bosTau2|chr14 (28236166-28235771) | |
| 561-948, gnl|Hg17|chr8 (118621303-118621683) | |
| 561-948, gnl|Mm7|chr15 (52786883-52787237) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-299, gnl|bosTau2|chr14 (28254821-28254523) | |
| 1-299, gnl|Hg17|chr8 (118602176-118602476) | |
| 454-560, gnl|bosTau2|chr14 (28246833-28246730) | |
| 454-560, gnl|canFam2|chr13 (19971841-19971963) | |
| 454-560, gnl|danRer3|chr2 (1887493-1887621) | |
| 454-560, gnl|dasNov1|scaffold_1879 (6534-6412) | |
| 454-560, gnl|echTel1|scaffold_277039 (33520-33398) | |
| 454-560, gnl|galGal2|chr2 (133475379-133475257) | |
| 454-560, gnl|hg17|chr8 (118612136-118612258) | |
| 454-560, gnl|Hg17|chr8 (118612141-118612247) | |
| 454-560, gnl|loxAfr1|scaffold_5881 (33443-33565) | |
| 454-560, gnl|mm7|chr15 (52777833-52777955) | |
| 454-560, gnl|Mm7|chr15 (52777838-52777944) | |
| 454-560, gnl|monDom2|scaffold_3 (39169057-39168930) | |
| 454-560, gnl|oryCun1|scaffold_178628 (39569-39447) | |
| 454-560, gnl|panTro1|chr7 (121337721-121337843) | |
| 454-560, gnl|rheMac2|chr8 (120072695-120072817) | |
| 454-560, gnl|rn3|chr7 (89028835-89028956) | |
| 454-560, gnl|tetNig1|chr21_random (939033-938917) | |
| 454-560, gnl|xenTro1|scaffold_301 (613710-613838) | |
| 561-948, gnl|bosTau2|chr14 (28236166-28235771) | |
| 561-948, gnl|Hg17|chr8 (118621303-118621683) | |
| 561-948, gnl|Mm7|chr15 (52786883-52787237) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| mgp (0.461361) | |
| fli (0.202881) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| duo (0.172801) | |
| cje (0.165235) | |
| cag (0.151194) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgp (0.461361) | |
| fli (0.202881) | |
| aor (0.195274) | |
| gul (0.177588) | |
| fty (0.17584) | |
| duo (0.172801) | |
| cje (0.165235) | |
| cag (0.151194) | |
| lin (0.145603) | |
| spl (0.143184) | |
| cst (0.140036) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| thg (0.126791) | |
| bla (0.124347) | |
| tra (0.123092) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| spc (0.113366) | |
| cty (0.10408) |